cluster # 7270

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Oryza sativa
cluster # 7270 cluster # 7270 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7270#0 length = 978 sequences # 3

consensus_7270#1 length = 602 sequences # 1

consensusID : consensus_7270#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 978
fasta sequence

                              [TTTTAACGGNTGAGGGAGCCTTTTCCTTTACCCAATTTTACACCCTGTTTTGCAGTGGAGGGACACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATCTGGCGCGAATCATAAATGGTGAGAACTCGGGTATATTGAGCCGCGCGCGGCGGCAGAAGGCAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGCGCAGGGAAGGCGATCGATCGACCGAAG-CCATGCCCA-CCACCGCAGAGGATCAGAAACAGTGGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCTTCGGCCGGGGTTATGATCCCACAAGAGATGACCTCAGGATCAGCACTGACCCTACTGCGATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGATAGAAGGTGAATGGGTGGCTTAGAGCTTCTTGGAGGGG--GTGGATGGGGTGGAATTGGAGGATAAGACGGCGATGGATGAGAAGCCAGTGATAGAGGAGGATGATCCACTGGTAGAGAAAGGGTTTTTCCTCCCGGTTAGTAACCCCCTATACTTCCGGTTTTGCAATCGGGAGTAGCAATCCGGGACTAAAGATACTCATCTTTAGTCCCGGGTGAAATAACCGGGACTAAAAATGTATCTTTAGTCCCGGTTCGTATCACCAACCAGGATTAAAAATGGCGATGGCAGCGCCAGTCCCGGTTAGCAACTGGGATTAAAGATGGCGATGGCAGCGCCAGTCCTGGTTAGCCACTGTTTTTTTTCATTATTTTTTCCCAAATCGAGTTGGAACTACACAA]

[+] EMBL CF292357             [TTTTAACGGNTGAGGGAGCCTTTTCCTTTACCCAATTTTACACCCTGTTTTGCAGTGGAGGGACACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATCTGGCGCGAATCATAAATGGTGAGAACTCGGGTATATTGAGCCGCGCGCGGCGGCAGAAGGCAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAAATTGGAGGGCGAGGCGCAGGGAAGGCGATCGATCGACCGAAG CCATGCCCA CCACCGCAGAGGATCAGAAACAGTGGAAGGTGTTGGAAGTCCAGCGGATCAATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK066662             [                                                                                                                                                                          CGGCAGAAGGCAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGCGCAGGGAAGGCGATCGATCGACCGAAG CCATGCCCA CCACCGCAGAGGATCAGAAACAGTGGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCTTCGGCCGGGGTTATGATCCCACAAGAGATGACCTCAGGATCAGCACTGACCCTACTGCGATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGATAGAAGGTGAATGGGTGGCTTAGAGCTTCTTGGAGGGG  GTGGATGGGGTGGAATTGGAGGATAAGACGGCGATGGATGAGAAGCCAGTGATAGAGGAGGATGATCCACTGGTAGAGAAAGGGTTTTTCCTCCCGGTTAGTAACCCCCTATACTTCCGGTTTTGCAATCGGGAGTAGCAATCCGGGACTAAAGATACTCATCTTTAGTCCCGGGTGAAATAACCGGGACTAAAAATGTATCTTTAGTCCCGGTTCGTATCACCAACCAGGATTAAAAATGGCGATGGCAGCGCCAGTCCCGGTTAGCAACTGGGATTAAAGATGGCGATGGCAGCGCCAGTCCTGGTTAGCCACTGTTTTTTTTCATTATTTTTTCCCAAATCGAGTTGGAACTACACAA]
[-] EMBL CA759928             [                                                                                                                                                                                                                                                                                            GATTGGAGGGCGTGGCGCAGGGAAGGCGATCGATCGACNGAAGCCCATGCCCANCCNCCGCAGAGGATCAGAAACAGTGGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTNCTNGGCGTGACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTGGTCTTCGGCCGGGGTTATGATCCCACAAGAGATGACCTCAGGATCAGCACTGACCCTAATGCGATGGTCGAGCTCATAGAGTCCTACCACGAGATGGGTCTGATAGAAGGTGAATGGGTGGCTTACAGCTTCTTGGAGGGGGTGTGGATGGGGTGGAATTGGAGGATAAGACGGCGATGGATGAGAAGCCAGTGATAGAGGAGGATGATACACTGGTAGAGAAAGGGTTTTTCCTCCCGGTTGGTAACCCCCTATACTTCCGGTTTTGCAATCGGGAGTAGCAATCCGGGACTAAAGATACTCATCTTTAGTCCCGGGTGAAATAACCGGGACTAAAAATGTATCTTTAGTCCCGGTTGGTATCACCAACCCGGATTAAAAATGGCGATGGCAACGCCAGTCCCGGTTAGCAACTGGGATTACAGATGGCGATGGCAGCGCCAGTCCTGGTTAGCCACTG TTTTTTTCATTATTTTTTCCCAAATCGAGTTGGAACTAaaa  ]




>consensus_7270#0
TTTTAACGGNTGAGGGAGCCTTTTCCTTTACCCAATTTTACACCCTGTTTTGCAGTGGAG
GGACACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATC
TGGCGCGAATCATAAATGGTGAGAACTCGGGTATATTGAGCCGCGCGCGGCGGCAGAAGG
CAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAA
CCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGC
GCAGGGAAGGCGATCGATCGACCGAAGCCATGCCCACCACCGCAGAGGATCAGAAACAGT
GGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACG
ATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCT
TCGGCCGGGGTTATGATCCCACAAGAGATGACCTCAGGATCAGCACTGACCCTACTGCGA
TGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGATAGAAGGTGAATGGGTGGCTT
AGAGCTTCTTGGAGGGGGTGGATGGGGTGGAATTGGAGGATAAGACGGCGATGGATGAGA
AGCCAGTGATAGAGGAGGATGATCCACTGGTAGAGAAAGGGTTTTTCCTCCCGGTTAGTA
ACCCCCTATACTTCCGGTTTTGCAATCGGGAGTAGCAATCCGGGACTAAAGATACTCATC
TTTAGTCCCGGGTGAAATAACCGGGACTAAAAATGTATCTTTAGTCCCGGTTCGTATCAC
CAACCAGGATTAAAAATGGCGATGGCAGCGCCAGTCCCGGTTAGCAACTGGGATTAAAGA
TGGCGATGGCAGCGCCAGTCCTGGTTAGCCACTGTTTTTTTTCATTATTTTTTCCCAAAT
CGAGTTGGAACTACACAA

consensusID : consensus_7270#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [CACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATCTGGCGCGAATCATAAATGGTGAGAACTCGGGTAGATTGAGCCGCGCGCGGCGGCAGAAGGCAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGCGCAGGGAAGGCGATCGATCGACCGAAGCCATGCCCACCACCGCAGAGGATCAGAAACAGTGGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCTTCGGCCGGGGTTATGATCCCACAAGTACGTGATCCGATCCTCGATGTCCCTTTCCTGCACAGTGAGATCAAGTCTTCCGATCTGGCTGATCCTCGGTATGTTTTGTGCAGGAGATGACCTCAGGATCAGCACTGACCCTACTGCGATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGA]

[-] EMBL CF292356             [CACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATCTGGCGCGAATCATAAATGGTGAGAACTCGGGTAGATTGAGCCGCGCGCGGCGGCAGAAGGCAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGCGCAGGGAAGGCGATCGATCGACCGAAGCCATGCCCACCACCGCAGAGGATCAGAAACAGTGGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCTTCGGCCGGGGTTATGATCCCACAAGTACGTGATCCGATCCTCGATGTCCCTTTCCTGCACAGTGAGATCAAGTCTTCCGATCTGGCTGATCCTCGGTATGTTTTGTGCAGGAGATGACCTCAGGATCAGCACTGACCCTACTGCGATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGA]




>consensus_7270#1
CACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATCTGG
CGCGAATCATAAATGGTGAGAACTCGGGTAGATTGAGCCGCGCGCGGCGGCAGAAGGCAA
CGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAACCC
GCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGCGCA
GGGAAGGCGATCGATCGACCGAAGCCATGCCCACCACCGCAGAGGATCAGAAACAGTGGA
AGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACGATA
GGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCTTCG
GCCGGGGTTATGATCCCACAAGTACGTGATCCGATCCTCGATGTCCCTTTCCTGCACAGT
GAGATCAAGTCTTCCGATCTGGCTGATCCTCGGTATGTTTTGTGCAGGAGATGACCTCAG
GATCAGCACTGACCCTACTGCGATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCT
GA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7270#0      TTTTAACGGNTGAGGGAGCCTTTTCCTTTACCCAATTTTACACCCTGTTTTGCAGTGGAG 60
consensus_7270#1      ------------------------------------------------------------
                                                                                  

consensus_7270#0      GGACACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATC 120
consensus_7270#1      ---CACGAATCAAACGTGCCTATAGTCGAGGGAGTCTAGATGGACTTTTTCCTAATAATC 57
                         *********************************************************

consensus_7270#0      TGGCGCGAATCATAAATGGTGAGAACTCGGGTATATTGAGCCGCGCGCGGCGGCAGAAGG 180
consensus_7270#1      TGGCGCGAATCATAAATGGTGAGAACTCGGGTAGATTGAGCCGCGCGCGGCGGCAGAAGG 117
                      ********************************* **************************

consensus_7270#0      CAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAA 240
consensus_7270#1      CAACGCGAAACCCTAATCCCCAAATTCGCTATCTCTTGGCTCTGCCATCGAAATTCGAAA 177
                      ************************************************************

consensus_7270#0      CCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGC 300
consensus_7270#1      CCCGCATAGCTTTGGAGCAAGCCGAATCTGCAACCAATCCATCAGATTGGAGGGCGAGGC 237
                      ************************************************************

consensus_7270#0      GCAGGGAAGGCGATCGATCGACCGAAGCCATGCCCACCACCGCAGAGGATCAGAAACAGT 360
consensus_7270#1      GCAGGGAAGGCGATCGATCGACCGAAGCCATGCCCACCACCGCAGAGGATCAGAAACAGT 297
                      ************************************************************

consensus_7270#0      GGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACG 420
consensus_7270#1      GGAAGGTGGTGGAAGTCCAGCGGATCAATGCGGAGTCCCATCCCCCTCCTCGGCGTGACG 357
                      ************************************************************

consensus_7270#0      ATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCT 480
consensus_7270#1      ATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTCGTCT 417
                      ************************************************************

consensus_7270#0      TCGGCCGGGGTTATGATCCCACAAG-AGATGACCTCAGGATCAGCACTGACCCTACTGCG 539
consensus_7270#1      TCGGCCGGGGTTATGATCCCACAAGTACGTGATCC---GATCCTCGATGTCCCTTTCCTG 474
                      ************************* *  *** *    ****  *  ** ****     *

consensus_7270#0      ATGGTCGAGCTCATAGAGTACTACCACAAGATGGGTCTGATAGAAGGTGAATGGGTGGCT 599
consensus_7270#1      CACAGTGAGATCA---AGTCTTCC---------GATCTGGCTGATCCTCGGTATGT---T 519
                            *** ***   ***  * *         * ****   **   *   *  **   *

consensus_7270#0      TAGAGCTTCTTGGAGGGGGTGGATGGGGTGGAATTGGAGGATAAGACGGCGATGGATGAG 659
consensus_7270#1      TTGTGCA----GGAGATGACCTCAGGATCAGCACTG----ACCCTACTGCGATGGTCGAG 571
                      * * **     ****  *      **    * * **    *    ** *******  ***

consensus_7270#0      AAGCCAGTGATAGAGGAGGATGATCCACTGGTAGAGAAAGGGTTTTTCCTCCCGGTTAGT 719
consensus_7270#1      C------TCATAGAGTACTACCACAAGATGGGTCTGA----------------------- 602
                             * ****** *  *  *     ***    **                       

consensus_7270#0      AACCCCCTATACTTCCGGTTTTGCAATCGGGAGTAGCAATCCGGGACTAAAGATACTCAT 779
consensus_7270#1      ------------------------------------------------------------
                                                                                  

consensus_7270#0      CTTTAGTCCCGGGTGAAATAACCGGGACTAAAAATGTATCTTTAGTCCCGGTTCGTATCA 839
consensus_7270#1      ------------------------------------------------------------
                                                                                  

consensus_7270#0      CCAACCAGGATTAAAAATGGCGATGGCAGCGCCAGTCCCGGTTAGCAACTGGGATTAAAG 899
consensus_7270#1      ------------------------------------------------------------
                                                                                  

consensus_7270#0      ATGGCGATGGCAGCGCCAGTCCTGGTTAGCCACTGTTTTTTTTCATTATTTTTTCCCAAA 959
consensus_7270#1      ------------------------------------------------------------
                                                                                  

consensus_7270#0      TCGAGTTGGAACTACACAA 978
consensus_7270#1      -------------------