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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1282 fasta sequence
[ATCCACTCCTGTCGTTGTTCAGCTTAGCTTGGAAGGGAGGAGAAGAATCTTTTTGTTCCTCCTGTCCTGTCCATAGCTCATGCAACACAAGCCATTAATCTAATCTTGCATTCATCTACATCTAATCATCTACTCCTACAAATCTTGTAGTATTAAAGAAGCTTAAATGATTAAGATTTTTTAAAAAAATCAATAAGTTCAAGAAGATTCCCTTGCTCTCCTGACTTCTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTTCAGTTGCAGTCGCGGAGAGCAGAGATTCATTTAATGTATTGGCTCATAAAAGCTTTCCCCTTGAAAACAAGAAGACAGGGTTAACTTCAGCCAATGGAAAGCTGTGTCAACTATGCGAGCAGTACTCAACGGAAGCACTGTTCTACCTCCAACAAAATGAAACCCAAACTGAGATTCTTAGCATCCTCCACCATGCATGCGCAAACGTTGGACCTCTAAAACAGCAGTGCATCACTCTGGTTGACTACTACATTCCCCTTTTCTTCTTGGAGGTTTCGATGGTAACACCTGAAAAGTTCTGTGAATCAGTGCATCTCTGCAGAAAGGGAACGATGCTTCGCCTACCATCTCGAGGAGATACATGCGGCATATGCCATCATGTTCTTGTTGAAGTTCTTATCATGCTAAAGGATCCTGACATGCAGCTGGAGATAGTCGAGATATTTCTCAAAGCATGCAGCAAGGCAGATAATTATGTACAGCAGTGCAAGAAGATGGTCCTTGAATATACCCCTTTGATTCTGGTGAAATCTCAGAAGTTTCTTGAGACGACAGACGTCTGCTCTACAATTCATGCATGCAAAACGGGGACACAAGCATCTGCAGAAACCATGCTTCTGTCTGCCGCATCGTGAAAACAATGCAAATCAAGAAATTGCTACTTATTTCCCAAGAGATTGAACCGGTAATGAATTGAAGATCAGATGCCTGTGGGAATTCTTTACTCTATTGCTGAAACAGTATTGAGTGAGGCAAAAAAAAATGTTGTATGTAGAGATTTGTGTTGTATATTTTGAACCTACACTGCTCTCAAGTTTGAAGCATGGAGCAGCTGTACCACCGTTCATCGATGATCGAGCATACAAAGTTACAAACTGTCTGATGTCATTGAATTTGGAAGTTACATGTGCAATTATCGCATTGTATCATTATCATTTGACAAACATTCATACT]
[+] EMBL AK067805 [ATCCACTCCTGTCGTTGTTCAGCTTAGCTTGGAAGGGAGGAGAAGAATCTTTTTGTTCCTCCTGTCCTGTCCATAGCTCATGCAACACAAGCCATTAATCTAATCTTGCATTCATCTACATCTAATCATCTACTCCTACAAATCTTGTAGTATTAAAGAAGCTTAAATGATTAAGATTTTTTAAAAAAATCAATAAGTTCAAGAAGATTCCCTTGCTCTCCTGACTTCTCCACCCCGTTCCAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTTCAGTTGCAGTCGCGGAGAGCAGAGATTCATTTAATGTATTGGCTCATAAAAGCTTTCCCCTTGAAAACAAGAAGACAGGGTTAACTTCAGCCAATGGAAAGCTGTGTCAACTATGCGAGCAGTACTCAACGGAAGCTCTGTTCTACCTCCAACAAAATGAAACCCAAACTGAGATTCTTAGCATCCTCCACCATGCATGCGCAAACGTTGGACCTCTAAAACAGCAGTGCATCACTCTGGTTGACTACTACATTCCCCTTTTCTTCTTGGAGGTTTCGATGGTAACACCTGAAAAGTTCTGTGAATCAGTGCATCTCTGCAGAAAGGGAACGATGCTTCGCCTACCATCTCGAGGAGATACATGCGGCATATGCCATCATGTTCTTGTTGAAGTTCTTATCATGCTAAAGGATCCTGACATGCAGCTGGAGATAGTCGAGATATTTCTCAAAGCATGCAGCAAGGCAGATAATTATGTACAGCAGTGCAAGAAGATGGTCCTTGAATATACCCCTTTGATTCTGGTGAAATCTCAGAAGTTTCTTGAGACGACAGACGTCTGCTCTACAATTCATGCATGCAAAACGGGGACACAAGCATCTGCAGAAACCATGCTTCTGTCTGCCGCATCGTGAAAACAATGCAAATCAAGAAATTGCTACTTATTTCCCAAGAGATTGAACCGGTAATGAATTGAAGATCAGATGCCTGTGGGAATTCTTTACTCTATTGCTGAAACAGTATTGAGTGAGGCAAAAAAAAATGTTGTATGTAGAGATTTGTGTTGTATATTTTGAACCTACACTGCTCTCAAGTTTGAAGCATGGAGCAGCTGTACCACCGTTCATCGATGATCGAGCATACAAAGTTACAAACTGTCTGATGTCATTGAATTTGGAAGTTACATGTGCAATTATCGCATTGTATCATTATCATTTGACAAACATTCATACT]
[+] EMBL CA753940 [ CAGAGAGCGAAGAAGCAACAAGGCAAAATGTGTTCCATAAGGAGCTTTGCTTTTGTGCTGGTATTAGCATTTTCAGTTGCAGTCGCGGAGAGCAGAGATTCATTTAATGTATTGGCTCATAAAAGCTTTCCCCTTGAAAACAAGAAGACAGGGTTAACTTCAGCCAATGGAAAGCTGTGTCAACTATGCGAGCAGTACTCAACGGAAGCACTGTTCTACCTCCAACAAAATGAAACCCAAACTGAGATTCTTAGCATCCTCCACCATGCATGCGCAAACGTTGGACCTCTAAAACAGCAGTGCATCACTCTGGTTGACTACTACATTCCCCTTTTCTTCTTGGAGGTTTCGATGGTAACACCTGAAAAGTTCTGTGAATCAGTGCATCTCTGCAGAAAGGGAACGATGCTTCGCCTACCATCTCGAGGAGATACATGCGGCATATGCCATCATGTTCTTGTTGAAGTTCTTATCATGCTAAAGGATCCTGACATGCAGCTGGAGATAGTCGAGATATTTCTCAGAGCATGCAGCAAGGCAGATTATTATGTACAGCAGTGCAAGAAGATGGTCCTTGAATATACCCCTTTGATTCTGGTGAAATCTCAGAA ]
[+] EMBL BE228841 [ ATAAGGAGCTTTGCTTTTGTGCTGGTATTANCATTTTCAGTTGCAGTCGCGGAGAGCANANATTCATTTAATGTATTGGCTCATAAAAGCTTTCCCCTTGAAAACAANAANACAGGGTTAACTTCAGCCAATGGAAAGCTGTGTCAACTATGCGAGCAGTACTCAACGGAAGCACTGTTCTACCTCCAACAAAATGAAACCCAAACTGAGATTCTTAGCATCCTCCACCATGCATGCGCAAACGTTGGACCTCTAAAACAGCAGTGCATCACTCTGGTTGACTACTACATTCCCCTTTTCTTCTTGGAGGTTTCGGTGGTAACACCTGAAAAGTTCTGTGAATCAGTGCATCTCTGCAGAAAGGGAACGATGCTTC ]
consensusID : consensus_7273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence
[AATGGAAAAGGAGACACAAAGTAAGCGGCTGCCATGTGTATCAGTAAGAGAACCACAAGGGTAGCAAATAGTATACGTCAAAGAGTGAGATCGAATACGAACGCGTCGACGGAAAGAGATCTCGTCGTGTTAAGCTCCCGCCAATGAGAGATGAAATAGTGATAACACGCACATAGCACACGGAACAACACAAACAGTTGCGTACACACGTCTCGCATGGCTGATGTAGCATCAACACTCTGTAGCGAACAAGACAAAATCAAACGAAGGATATAGCGCTGCGCAAATAAGTAAACGAGAACAACTGCGGGTTAGGTCTTCGTCAGATGTACAAACCAAAATCGCGAGAAACACAGAGGGGTGGGGACAAATGATGTCTTCTAGGAGGACGATTGAGAGAGGATAGCAAATGGAGAATTCACGGGTAGATAGCGGGGAAAAAAATATGCTAAAACCTCAATATCAAGATGCCGCTGAGAAATAAAGACACCGACGCTGAGACAGCATTGAGTCAGGCAAAAAAAACAATGTTGTATGTAGAGATTTATGTTGTATATTTTGAACCTACACTGCTCTCAAGTTTGAAGCATGGAGCACCTGCACCACCGTTCAAAAATGATCGAGCATACAAAGTTACAAACTGTCTGATGTCATTGAATTTGGAAGTTACATGTGCAATTATCGCATTGTATCATTATCATTTGACAAACATTCATACTATTATTCCAAAAAAAAAAAAAAAA]
[-] EMBL CA761789 [AATGGAAAAGGAGACACAAAGTAAGCGGCTGCCATGTGTATCAGTAAGAGAACCACAAGGGTAGCAAATAGTATACGTCAAAGAGTGAGATCGAATACGAACGCGTCGACGGAAAGAGATCTCGTCGTGTTAAGCTCCCGCCAATGAGAGATGAAATAGTGATAACACGCACATAGCACACGGAACAACACAAACAGTTGCGTACACACGTCTCGCATGGCTGATGTAGCATCAACACTCTGTAGCGAACAAGACAAAATCAAACGAAGGATATAGCGCTGCGCAAATAAGTAAACGAGAACAACTGCGGGTTAGGTCTTCGTCAGATGTACAAACCAAAATCGCGAGAAACACAGAGGGGTGGGGACAAATGATGTCTTCTAGGAGGACGATTGAGAGAGGATAGCAAATGGAGAATTCACGGGTAGATAGCGGGGAAAAAAATATGCTAAAACCTCAATATCAAGATGCCGCTGAGAAATAAAGACACCGACGCTGAGACAGCATTGAGTCAGGCAAAAAAAACAATGTTGTATGTAGAGATTTATGTTGTATATTTTGAACCTACACTGCTCTCAAGTTTGAAGCATGGAGCACCTGCACCACCGTTCAAAAATGATCGAGCATACAAAGTTACAAACTGTCTGATGTCATTGAATTTGGAAGTTACATGTGCAATTATCGCATTGTATCATTATCATTTGACAAACATTCATACTATTATTCCAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7273#0 ATCCACTCCTGTCGTTGTTCAGCTTAGCTTGGAAGGGAGGAGAAGAATCTTTTTGTTCCT 60
consensus_7273#1 ------------------------------------------------------------
consensus_7273#0 CCTGTCCTGTCCATAGCTCATGCAACACAAGCCATTAATCTAATCTTGCATTCATCTACA 120
consensus_7273#1 ------------------------------------------------------------
consensus_7273#0 TCTAATCATCTACTCCTACAAATCTTGTAGTATTAAAGAAGCTTAAATGATTAAGATTTT 180
consensus_7273#1 ------------------------------------------------------------
consensus_7273#0 TTAAAAAAATCAATAAGTTCAAGAAGATTCCCTTGCTCTCCTGACTTCTCCACCCCGTTC 240
consensus_7273#1 ------------------------------------------------------------
consensus_7273#0 CAAGAACAAAGCAGACAGAGAGCGAAGAAGCAACAAGGCAAAATGTGTTCCATAAGGAGC 300
consensus_7273#1 ------------------------------------------------------------
consensus_7273#0 TTTGCTTTTGTGCTGGTATTAGCATTTTCAGTTGCAGTCGCGGAGAGCAGAGATTCATTT 360
consensus_7273#1 ------------------------------------------------------------
consensus_7273#0 AATGTATTGGCTCATAAAAGCTTTCCCCTTGAAAACAAGAAGACAGGGTTAACTTCAGCC 420
consensus_7273#1 ------------------------------------------------------------
consensus_7273#0 AATGGAAAGCTGTGTCAACTATGCGAGCAGTACTCAACGGAAGCACTGTTCTACCTCCAA 480
consensus_7273#1 ------------------------------------------------------------
consensus_7273#0 CAAAATGAAACCCAAACTGAGATTCTTAGCATCCTCCACCATGCATGCGCAAACGTTGGA 540
consensus_7273#1 ------------------------------------------------------------
consensus_7273#0 CCTCTAAAACAGCAGTGCATCACTCTGGTTGACTACTACATTCCCCTTTTCTTCTTGGAG 600
consensus_7273#1 --AATGGAAAAGGAG-ACA-CAAAGTAAGCGGCTGCCATGTG-----TATCAGTAAGAGA 51
* ** ** ** ** ** * * ** * * * * ** *
consensus_7273#0 GTTTCGATGGTAACACCTGAAAAGTTCTGTGAATCAGTGCATCTCTGCAGAAAGGGAACG 660
consensus_7273#1 ACCACAAGGGTAGCA---AATAGTATACGTCAAAGAGTGAGATCGAATACGAACGCGTCG 108
* * **** ** * * * ** ** **** * ** * **
consensus_7273#0 ATGCTTCGCCTACCATCTCGAGGAGATACA-TGCGGCATATGCCATCATGTTCTTGTTGA 719
consensus_7273#1 ACG----GAAAGAGATCTCGTCGTGTTAAGCTCCCGCCAATGAGAG-ATGAAATAGTGAT 163
* * * ****** * * ** * * ** *** * *** * **
consensus_7273#0 AGTTCTTATCATGCTAAAGGATCCTGACATGCAGCTGGAGATAGTCGAGATATTTCTCAA 779
consensus_7273#1 AACACGCACATAGCACACGGAACAACACAAACAGTTGCGTACACACG-----TCTCGCAT 218
* * * ** * *** * *** *** ** * * ** * ** **
consensus_7273#0 AGCATGCAGCAAGGCAGATAATTATGTACAGCAGTGCAAGAAGATGGTCCTTGAATATAC 839
consensus_7273#1 GGC-TGATGTAGCATCAACA-CTCTGTAGCGAACAAGACAAAATCAAACGAAGGATATAG 276
** ** * * * * * **** * * * ** * * *****
consensus_7273#0 CCCTTTGATTCTGGTGAAATCTCAGAAGTTTCTTGAGACGACAGACGTCTGCTCTACAAT 899
consensus_7273#1 CGCTGCGCAAATAAGTAAACGAGAACAACTGCGGGTTAGGTCTT-CGTCAGATGTACAAA 335
* ** * * *** * * * * * * * * **** * * *****
consensus_7273#0 TCATGCATGCAAAACGGGGACACAAGCATCTGCAGAAACCATG-CTTCTGTCTGCCGCAT 958
consensus_7273#1 CCAAAATCGCGAGA--AACACAGAGGGGTGGGGACAAATGATGTCTTCTAGGAGGACGAT 393
** ** * * *** * * * * * *** *** ***** * **
consensus_7273#0 CGTGAAAACAATGCAAATCAAGAAATTGCTACTTATTTCCCAAGAGATTGAACCGGTAAT 1018
consensus_7273#1 TGAGAGAGGATAGCAAATGGAGAATTCACGGGTAGATAGCGGGGAAAAAAATATGCTAAA 453
* ** * * ****** **** * * * * * ** * * * ***
consensus_7273#0 GAATTGAAGATCAGATGCCTGTGGGAATTCTTTACTCTATTGCTGAAACAGTATTGAGTG 1078
consensus_7273#1 ACCTCAATATCAAGATGCCGCTGAGAAATAAAGACACCGACGCTGAGACAGCATTGAGTC 513
* * ******* ** *** * ** * ***** **** *******
consensus_7273#0 AGGCAAAAAAAA--ATGTTGTATGTAGAGATTTGTGTTGTATATTTTGAACCTACACTGC 1136
consensus_7273#1 AGGCAAAAAAAACAATGTTGTATGTAGAGATTTATGTTGTATATTTTGAACCTACACTGC 573
************ ******************* **************************
consensus_7273#0 TCTCAAGTTTGAAGCATGGAGCAGCTGTACCACCGTTCATCGATGATCGAGCATACAAAG 1196
consensus_7273#1 TCTCAAGTTTGAAGCATGGAGCACCTGCACCACCGTTCAAAAATGATCGAGCATACAAAG 633
*********************** *** *********** ******************
consensus_7273#0 TTACAAACTGTCTGATGTCATTGAATTTGGAAGTTACATGTGCAATTATCGCATTGTATC 1256
consensus_7273#1 TTACAAACTGTCTGATGTCATTGAATTTGGAAGTTACATGTGCAATTATCGCATTGTATC 693
************************************************************
consensus_7273#0 ATTATCATTTGACAAACATTCATACT------------------------ 1282
consensus_7273#1 ATTATCATTTGACAAACATTCATACTATTATTCCAAAAAAAAAAAAAAAA 743
**************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||