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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1117 fasta sequence
[TGCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACCCACACCGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTCTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATCGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCTGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCTGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTATGAAGTTGAGGTGAACCAAACAGATTATACAAATTCCCATTCATAACTCACATAATCAGCCTGCAAAGTTCAGTTTGTTTCTCCCACTGTTTGTTCAGAGATGCTTGAAAAAAAAACCTGCATGAACATTCAGACAAATTGCTTCTGCTGCTGCTGCTGCTGTTTTTGCAGGTGAATATCAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAAGATC]
[+] EMBL AK066183 [TGCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACCCACACCGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTCTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATCGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCTGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCTGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTATGAAGTTGAGGTGAACCAAACAGATTATACAAATTCCCATTCATAACTCACATAATCAGCCTGCAAAGTTCAGTTTGTTTCTCCCACTGTTTGTTCAGAGATGCTTGAAAAAAAAACCTGCATGAACATTCAGACAAATTGCTTCTGCTGCTGCTGCTGCTGTTTTTGCAGGTGAATATCAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAAGATC]
consensusID : consensus_7275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1011 fasta sequence
[GCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACCCACACCGTTCCCAGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTCTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATCGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCTGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCTGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTATGAAGTTGAGGTGAATATCAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGC-AAAAAAAGATCCAAAACTTGCAAAAATGCACGTCAAAGACTGGTAAATACCAGTAACTTGG]
[+] EMBL AK104548 [GCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACCCACACCGTTCCCAGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTCTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATCGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCTGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCTGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTATGAAGTTGAGGTGAATATCAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGC AAAAAAAGAT ]
[+] EMBL AK059949 [ ACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACCCACACCGTTCCCAGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTCTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATCGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCTGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCTGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTATGAAGTTGAGGTGAATATCAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAAGATCCAAAACTTGCAAAAATGCACGTCAAAGACTGGTAAATACCAGTAACTTGG]
consensusID : consensus_7275#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence
[AGTATGTGACGGTTGAAGATCTTGGCCCCCCTGAGAAGGCTGCAGAGAGAGTGCTGCAACAGTACTTGACAGAGTTCATGTCGACCAGGCTGGGCGTTCGACGAACCTCGAACATCCTGTCAGCATCGTCGAAGGTTGCTGACGATGGCAAGCTCTACTATGAAGTTGAGGTGAATCAAACAGATTATACAAATTCCATTCATAATGCACAAAATCAACCTGCAAAGTTCATTTGTTTTTCCCACTTTTTGTTCAGAGATGCTTGAAATCAACACAAAACCTGCATGAACATTCAGACAACTGTTTTTGCAGGTGAACATAAAGTCTTTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAAGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGCAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCTTTCAGGGTCAACAAGACGGTATAGCAGTAAAGATGCAGATGGAGCACAGCAGGTAGTGCTTTATCTAGTTGAGAACAGAATTTTTTGTATAGCAGATTATTTATTCCCTTCATTATTCTTTCACTTCTTTTTTGTTATCTTGTATAATATTATCATATACAGTACCTTGTGTGTAAGATTTTATATAGTACCTTTGTAAGGTGGTCTGGTGAGAAGAGCAAAAAGATCCAAAACAA]
[-] EMBL CB630828 [AGTATGTGACGGTTGAAGATCTTGGCCCCCCTGAGAAGGCTGCAGAGAGAGTGCTGCAACAGTACTTGACAGAGTTCATGTCGACCAGGCTGGGCGTTCGACGAACCTCGAACATCCTGTCAGCATCGTCGAAGGTTGCTGACGATGGCAAGCTCTACTATGAAGTTGAGGTGAATCAAACAGATTATACAAATTCCATTCATAATGCACAAAATCAACCTGCAAAGTTCATTTGTTTTTCCCACTTTTTGTTCAGAGATGCTTGAAATCAACACAAAACCTGCATGAACATTCAGACAACTGTTTTTGCAGGTGAACATAAAGTCTTTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAAGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGCAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCTTTCAGGGTCAACAAGACGGTATAGCAGTAAAGATGCAGATGGAGCACAGCAGGTAGTGCTTTATCTAGTTGAGAACAGAATTTTTTGTATAGCAGATTATTTATTCCCTTCATTATTCTTTCACTTCTTTTTTGTTATCTTGTATAATATTATCATATACAGTACCTTGTGTGTAAGATTTTATATAGTACCTTTGTAAGGTGGTCTGGTGAGAAGAGCAAAAAGATCCAAAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7275#0 TGCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCC 60
consensus_7275#1 -GCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCC 59
consensus_7275#2 ------------------------------------------------------------
consensus_7275#0 TGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACC 120
consensus_7275#1 TGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACC 119
consensus_7275#2 ------------------------------------------------------------
consensus_7275#0 CACACCG-------GAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTC 173
consensus_7275#1 CACACCGTTCCCAGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTC 179
consensus_7275#2 ------------------------------------------------------------
consensus_7275#0 TTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATC 233
consensus_7275#1 TTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATC 239
consensus_7275#2 ------------------------------------------------------------
consensus_7275#0 GACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCT 293
consensus_7275#1 GACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCT 299
consensus_7275#2 ------------------------------------------------------------
consensus_7275#0 GGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATA 353
consensus_7275#1 GGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATA 359
consensus_7275#2 ------------------------------------------------------------
consensus_7275#0 TCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCT 413
consensus_7275#1 TCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCT 419
consensus_7275#2 -------------------AGTATGTGACGGTTGAAGATCTTGGCCCCCCTGAGAAGGCT 41
**** ******************* ***** *********
consensus_7275#0 GCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGA 473
consensus_7275#1 GCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGA 479
consensus_7275#2 GCAGAGAGAGTGCTGCAACAGTACTTGACAGAGTTCATGTCGACCAGGCTGGGCGTTCGA 101
***************** ****** ************************* *********
consensus_7275#0 CGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTAT 533
consensus_7275#1 CGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTAT 539
consensus_7275#2 CGAACCTCGAACATCCTGTCAGCATCGTCGAAGGTTGCTGACGATGGCAAGCTCTACTAT 161
***** ***************** *********** ******** ***************
consensus_7275#0 GAAGTTGAGGTGAACCAAACAGATTATACAAATTCCCATTCATAACTCACATAATCAGCC 593
consensus_7275#1 GAAGTTGAGGTGAA---------------------------------------------- 553
consensus_7275#2 GAAGTTGAGGTGAATCAAACAGATTATACAAATTCCATTCATAATGCACAAAATCAACCT 221
**************
consensus_7275#0 TGCAAAGTTCAGTTTGTTTCTCCCACTGTTTGTTCAGAGATGCTTGAAAAAAAAACCTGC 653
consensus_7275#1 ------------------------------------------------------------
consensus_7275#2 GCAAAGTTCATTTGTTTTTCCCACTTTTTGTTCAGAGA-------------------TGC 262
consensus_7275#0 ATGAACATTCAGACAAATTGCTTCTGCTGCTGCTGCTGCTGTTTTTGCAGGTGAATATCA 713
consensus_7275#1 -------------------------------------------------------TATCA 558
consensus_7275#2 TTGAAATCAACACAAAACCTGCATGAACATTCAGACAACTGTTTTTGCAGGTGAACATAA 322
** *
consensus_7275#0 AGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGG 773
consensus_7275#1 AGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGG 618
consensus_7275#2 AGTCTTTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAAGACAGGGTGCAGCGGCTGG 382
**** *********************************** *******************
consensus_7275#0 AGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCC 833
consensus_7275#1 AGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCC 678
consensus_7275#2 AGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCC 442
************************************************************
consensus_7275#0 GGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGG 893
consensus_7275#1 GGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGG 738
consensus_7275#2 GGCTGCAGTCGCCGGAGCAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGG 502
***************** ******************************************
consensus_7275#0 ACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAG----------------TAAGAAGCA 937
consensus_7275#1 ACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAG----------------TAAGAAGCA 782
consensus_7275#2 ACTCTTTCAGGGTCAACAAGACGGTATAGCAGTAAAGATGCAGATGGAGCACAGCAGGTA 562
**** ******** ******** * ****** * * * * *
consensus_7275#0 GTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTG 997
consensus_7275#1 GTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTG 842
consensus_7275#2 GTGCTTTATC-TAGTTGAGAACAGAATTTTTTGTAT----AGCAGATTATTTATTCCCTT 617
******* ** ********* *************** ******** * * *** **
consensus_7275#0 CATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTA 1057
consensus_7275#1 CATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTA 902
consensus_7275#2 CATTATTCTTTCACTTCTTTTTTGTTATCTTGTATAATATTATCAT-ATACAGTACCTTG 676
************** *************** ** ***** *** ********
consensus_7275#0 TGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAAGATC 1117
consensus_7275#1 TGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAGATCC 962
consensus_7275#2 TGTGTAAGATTTTATATAGTACCTTTGTAAGGTGGTCTGGTGAGAAGAGCAAAAAGATCC 736
*********** ************ ****** ** ********* ** ***** *
consensus_7275#0 -------------------------------------------------
consensus_7275#1 AAAACTTGCAAAAATGCACGTCAAAGACTGGTAAATACCAGTAACTTGG 1011
consensus_7275#2 AAAACAA------------------------------------------ 743
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||