These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1117 fasta sequence [TGCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACCCACACCGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTCTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATCGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCTGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCTGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTATGAAGTTGAGGTGAACCAAACAGATTATACAAATTCCCATTCATAACTCACATAATCAGCCTGCAAAGTTCAGTTTGTTTCTCCCACTGTTTGTTCAGAGATGCTTGAAAAAAAAACCTGCATGAACATTCAGACAAATTGCTTCTGCTGCTGCTGCTGCTGTTTTTGCAGGTGAATATCAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAAGATC] [+] EMBL AK066183 [TGCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACCCACACCGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTCTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATCGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCTGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCTGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTATGAAGTTGAGGTGAACCAAACAGATTATACAAATTCCCATTCATAACTCACATAATCAGCCTGCAAAGTTCAGTTTGTTTCTCCCACTGTTTGTTCAGAGATGCTTGAAAAAAAAACCTGCATGAACATTCAGACAAATTGCTTCTGCTGCTGCTGCTGCTGTTTTTGCAGGTGAATATCAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAAGATC] consensusID : consensus_7275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1011 fasta sequence [GCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACCCACACCGTTCCCAGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTCTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATCGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCTGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCTGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTATGAAGTTGAGGTGAATATCAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGC-AAAAAAAGATCCAAAACTTGCAAAAATGCACGTCAAAGACTGGTAAATACCAGTAACTTGG] [+] EMBL AK104548 [GCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACCCACACCGTTCCCAGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTCTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATCGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCTGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCTGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTATGAAGTTGAGGTGAATATCAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGC AAAAAAAGAT ] [+] EMBL AK059949 [ ACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCCTGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACCCACACCGTTCCCAGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTCTTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATCGACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCTGGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATATCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCTGCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGACGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTATGAAGTTGAGGTGAATATCAAGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAGTAAGAAGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAAGATCCAAAACTTGCAAAAATGCACGTCAAAGACTGGTAAATACCAGTAACTTGG] consensusID : consensus_7275#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence [AGTATGTGACGGTTGAAGATCTTGGCCCCCCTGAGAAGGCTGCAGAGAGAGTGCTGCAACAGTACTTGACAGAGTTCATGTCGACCAGGCTGGGCGTTCGACGAACCTCGAACATCCTGTCAGCATCGTCGAAGGTTGCTGACGATGGCAAGCTCTACTATGAAGTTGAGGTGAATCAAACAGATTATACAAATTCCATTCATAATGCACAAAATCAACCTGCAAAGTTCATTTGTTTTTCCCACTTTTTGTTCAGAGATGCTTGAAATCAACACAAAACCTGCATGAACATTCAGACAACTGTTTTTGCAGGTGAACATAAAGTCTTTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAAGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGCAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCTTTCAGGGTCAACAAGACGGTATAGCAGTAAAGATGCAGATGGAGCACAGCAGGTAGTGCTTTATCTAGTTGAGAACAGAATTTTTTGTATAGCAGATTATTTATTCCCTTCATTATTCTTTCACTTCTTTTTTGTTATCTTGTATAATATTATCATATACAGTACCTTGTGTGTAAGATTTTATATAGTACCTTTGTAAGGTGGTCTGGTGAGAAGAGCAAAAAGATCCAAAACAA] [-] EMBL CB630828 [AGTATGTGACGGTTGAAGATCTTGGCCCCCCTGAGAAGGCTGCAGAGAGAGTGCTGCAACAGTACTTGACAGAGTTCATGTCGACCAGGCTGGGCGTTCGACGAACCTCGAACATCCTGTCAGCATCGTCGAAGGTTGCTGACGATGGCAAGCTCTACTATGAAGTTGAGGTGAATCAAACAGATTATACAAATTCCATTCATAATGCACAAAATCAACCTGCAAAGTTCATTTGTTTTTCCCACTTTTTGTTCAGAGATGCTTGAAATCAACACAAAACCTGCATGAACATTCAGACAACTGTTTTTGCAGGTGAACATAAAGTCTTTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAAGACAGGGTGCAGCGGCTGGAGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCCGGCTGCAGTCGCCGGAGCAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGGACTCTTTCAGGGTCAACAAGACGGTATAGCAGTAAAGATGCAGATGGAGCACAGCAGGTAGTGCTTTATCTAGTTGAGAACAGAATTTTTTGTATAGCAGATTATTTATTCCCTTCATTATTCTTTCACTTCTTTTTTGTTATCTTGTATAATATTATCATATACAGTACCTTGTGTGTAAGATTTTATATAGTACCTTTGTAAGGTGGTCTGGTGAGAAGAGCAAAAAGATCCAAAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7275#0 TGCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCC 60 consensus_7275#1 -GCTACACTGCTCCGGCCATGGCCATCGTCGCCGTCACGGCCGGAGGACGGCGCCCTCCC 59 consensus_7275#2 ------------------------------------------------------------ consensus_7275#0 TGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACC 120 consensus_7275#1 TGCCGCCGCGTGCCGCCCGCCGCTTCCCCGCCCGCGAGGCTCTCCTGCCGCTGTGCCACC 119 consensus_7275#2 ------------------------------------------------------------ consensus_7275#0 CACACCG-------GAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTC 173 consensus_7275#1 CACACCGTTCCCAGGAGGAATGTACTATCCACAATGCTATCCACTTCAACAGTCTTCCTC 179 consensus_7275#2 ------------------------------------------------------------ consensus_7275#0 TTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATC 233 consensus_7275#1 TTCGGACCGAAACAGATCACACTGGCCGAGACAACTGGTGGTACATTCAGGGAGTACATC 239 consensus_7275#2 ------------------------------------------------------------ consensus_7275#0 GACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCT 293 consensus_7275#1 GACACATTCGATGGCTACTCCTTCCTCTACCCAAAGAGCTGGATCCAGGTCCGGGGAGCT 299 consensus_7275#2 ------------------------------------------------------------ consensus_7275#0 GGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATA 353 consensus_7275#1 GGTGCTGACATATTCTTCAGAGACCCGTTCTTCCTCGACGAGAACATGTCGGTCGAGATA 359 consensus_7275#2 ------------------------------------------------------------ consensus_7275#0 TCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCT 413 consensus_7275#1 TCGTCTCCTTCGTCGTCGAAGTACATGACGGTTGAAGATCTTGGGCCCCCAGAGAAGGCT 419 consensus_7275#2 -------------------AGTATGTGACGGTTGAAGATCTTGGCCCCCCTGAGAAGGCT 41 **** ******************* ***** ********* consensus_7275#0 GCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGA 473 consensus_7275#1 GCAGAGAGAGTGCTGCAGCAGTACCTGACAGAGTTCATGTCGACCAGGCTAGGCGTTCGA 479 consensus_7275#2 GCAGAGAGAGTGCTGCAACAGTACTTGACAGAGTTCATGTCGACCAGGCTGGGCGTTCGA 101 ***************** ****** ************************* ********* consensus_7275#0 CGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTAT 533 consensus_7275#1 CGAACGTCGAACATCCTGTCAGCGTCGTCGAAGGTCGCTGACGACGGCAAGCTCTACTAT 539 consensus_7275#2 CGAACCTCGAACATCCTGTCAGCATCGTCGAAGGTTGCTGACGATGGCAAGCTCTACTAT 161 ***** ***************** *********** ******** *************** consensus_7275#0 GAAGTTGAGGTGAACCAAACAGATTATACAAATTCCCATTCATAACTCACATAATCAGCC 593 consensus_7275#1 GAAGTTGAGGTGAA---------------------------------------------- 553 consensus_7275#2 GAAGTTGAGGTGAATCAAACAGATTATACAAATTCCATTCATAATGCACAAAATCAACCT 221 ************** consensus_7275#0 TGCAAAGTTCAGTTTGTTTCTCCCACTGTTTGTTCAGAGATGCTTGAAAAAAAAACCTGC 653 consensus_7275#1 ------------------------------------------------------------ consensus_7275#2 GCAAAGTTCATTTGTTTTTCCCACTTTTTGTTCAGAGA-------------------TGC 262 consensus_7275#0 ATGAACATTCAGACAAATTGCTTCTGCTGCTGCTGCTGCTGTTTTTGCAGGTGAATATCA 713 consensus_7275#1 -------------------------------------------------------TATCA 558 consensus_7275#2 TTGAAATCAACACAAAACCTGCATGAACATTCAGACAACTGTTTTTGCAGGTGAACATAA 322 ** * consensus_7275#0 AGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGG 773 consensus_7275#1 AGTCATTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAGGACAGGGTGCAGCGGCTGG 618 consensus_7275#2 AGTCTTTTGCCAGCAACAACGAGCTGGCGGTGATGCCGCAAGACAGGGTGCAGCGGCTGG 382 **** *********************************** ******************* consensus_7275#0 AGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCC 833 consensus_7275#1 AGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCC 678 consensus_7275#2 AGTGGGACCGGCGCTACCTGTCGGTGCTCGGCGTCGAGAACAAGCGGCTGTACGAGCTCC 442 ************************************************************ consensus_7275#0 GGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGG 893 consensus_7275#1 GGCTGCAGTCGCCGGAGAAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGG 738 consensus_7275#2 GGCTGCAGTCGCCGGAGCAGGTGTTCAAGGAGGAAGAAGGTGACCTGAGGAGAGTCATGG 502 ***************** ****************************************** consensus_7275#0 ACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAG----------------TAAGAAGCA 937 consensus_7275#1 ACTCCTTCAGGGTTAACAAGACTGCCTAGCAGCAG----------------TAAGAAGCA 782 consensus_7275#2 ACTCTTTCAGGGTCAACAAGACGGTATAGCAGTAAAGATGCAGATGGAGCACAGCAGGTA 562 **** ******** ******** * ****** * * * * * consensus_7275#0 GTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTG 997 consensus_7275#1 GTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTG 842 consensus_7275#2 GTGCTTTATC-TAGTTGAGAACAGAATTTTTTGTAT----AGCAGATTATTTATTCCCTT 617 ******* ** ********* *************** ******** * * *** ** consensus_7275#0 CATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTA 1057 consensus_7275#1 CATTATTCTTTCACCCTCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTA 902 consensus_7275#2 CATTATTCTTTCACTTCTTTTTTGTTATCTTGTATAATATTATCAT-ATACAGTACCTTG 676 ************** *************** ** ***** *** ******** consensus_7275#0 TGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAAGATC 1117 consensus_7275#1 TGTGTAAGATTATATATAGTACCTCTGTAAGATGCTCTGGTGAGGAGCAAAAAAAGATCC 962 consensus_7275#2 TGTGTAAGATTTTATATAGTACCTTTGTAAGGTGGTCTGGTGAGAAGAGCAAAAAGATCC 736 *********** ************ ****** ** ********* ** ***** * consensus_7275#0 ------------------------------------------------- consensus_7275#1 AAAACTTGCAAAAATGCACGTCAAAGACTGGTAAATACCAGTAACTTGG 1011 consensus_7275#2 AAAACAA------------------------------------------ 743 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||