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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 958 fasta sequence
[CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGCGGCGAGCAGAGCAGGGGAGAGGAGGGGATCCTGCAGGGAGGGAGAAGTTATCTGGCAATTTCAGGGTGTTTTGAGTTAAAGGAAGTTAAAGGAAATTTGATAGTGATAGTGTTGCAATTTGGGTTTTATCAAATCAGCTATGGACTCAGTGGTGTTGGAGTGTGGCGACATCTCCGCTTCCCAGGAAGAACTCCTTGCCCACTCCTCATTCCTCAATGGTGGTGATGATGGTGAGGTCTTCAGCACACCTCC-CACAACTCAAGAGGACGCCATCACCATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAGCGCCATTGCCATCACCAGCAGCCGTGT--CGCACCACCCCTGGATGCAGCTCCTCAGAGGACAACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCGCCAGCGAGGCCTCTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACT]
[+] EMBL AK066426 [CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGCGGCGAGCAGAGCAGGGGAGAGGAGGGGATCCTGCAGGGAGGGAGAAGTTATCTGGCAATTTCAGGGTGTTTTGAGTTAAAGGAAGTTAAAGGAAATTTGATAGTGATAGTGTTGCAATTTGGGTTTTATCAAATCAGCTATGGACTCAGTGGTGTTGGAGTGTGGCGACATCTCCGCTTCCCAGGAAGAACTCCTTGCCCACTCCTCATTCCTCAATGGTGGTGATGATGGTGAGGTCTTCAGCACACCTCC CACAACTCAAGAGGACGCCATCACCATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAGCGCCATTGCCATCACCAGCAGCCGTGT CGCACCACCCCTGGATGCAGCTCCTCAGAGGACAACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCGCCAGCGAGGCCTCTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACT]
[-] EMBL CA760986 [ CTTCAGCACACCTCCNCACAACTCAAGAGGACGCCATCACTATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAGCACCATTGCCATCACCAGCAGCCGTGTCGCGCACCACCCCTGGATGCAGCTCCCCAGAGGACAACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCCTTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAAaaaaaaa ]
consensusID : consensus_7277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[AGGAGAGGACGAGACAAGGGGGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCCANCCCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCCTTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAATATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAACTCTTGTGTTTCCTTCCTCTCCACTTGCCATTTCACTCAGCTTGGTACTTGTGTTTTTGCTATCTTTTGCACCTAAATCTGACATTGTTTCATATTTATAGTGCATAAGAAATCGAGAGCAGCTATGACTGAGCAAAAAAAAAAAAAAAA]
[-] EMBL CA761235 [AGGAGAGGACGAGACAAGGGGGGGTTTGCACAAGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCCANCCCCCAAGCCCAGATCGCACCACCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCACAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCCTTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAGGTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATCCCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAATATATCTGGTTTTTACCACTGTGGTGTTCAGAAGTTGTAGTTGCCTGGACAAGCAGGTTTACTCGGGTTATTCAATGATGAATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAACTCTTGTGTTTCCTTCCTCTCCACTTGCCATTTCACTCAGCTTGGTACTTGTGTTTTTGCTATCTTTTGCACCTAAATCTGACATTGTTTCATATTTATAGTGCATAAGAAATCGAGAGCAGCTATGACTGAGCAAAAAAAAAAAAAAAA]
consensusID : consensus_7277#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence
[TGGGTGTTTTCAAATTGTATTTGCCTGGGACAACCAAGTTTACTCGGTTATTCAATGATGGAATCATGGAAACTGGCCGAATCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAAAAAAAAAA]
[+] EMBL BI797939 [TGGGTGTTTTCAAATTGTATTTGCCTGGGACAACCAAGTTTACTCGGTTATTCAATGATGGAATCATGGAAACTGGCCGAATCCATCAAACATCTTTGGTGATATATATAAGTTCACTGCATTGGAGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7277#1 ------------------------------------------------------------
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 CTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGCGGCGAGCAGAGCAGGGGAGA 60
consensus_7277#1 ------------------------------------------------------------
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 GGAGGGGATCCTGCAGGGAGGGAGAAGTTATCTGGCAATTTCAGGGTGTTTTGAGTTAAA 120
consensus_7277#1 ------------------------------------------------------------
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 GGAAGTTAAAGGAAATTTGATAGTGATAGTGTTGCAATTTGGGTTTTATCAAATCAGCTA 180
consensus_7277#1 ------------------------------------------------------------
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 TGGACTCAGTGGTGTTGGAGTGTGGCGACATCTCCGCTTCCCAGGAAGAACTCCTTGCCC 240
consensus_7277#1 ------------------------------------------------------------
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 ACTCCTCATTCCTCAATGGTGGTGATGATGGTGAGGTCTTCAGCACACCTCCCACAACTC 300
consensus_7277#1 ------------------------------------------------------------
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 AAGAGGACGCCATCACCATGTGCACCCTCCCCTTCACCCAGTCCCAGTCCCCAGCACCAG 360
consensus_7277#1 ------------------------------------------------------------
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 CGCCATTGCCATCACCAGCAGCCGTGTCGCACCACCCCTGGATGCAGCTCCTCAGAGGAC 420
consensus_7277#1 ----------------------------AGGAGAGGACGAGACAAGGGGGGGTTTGCACA 32
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 AACCGAGACGATGAGATGAGCGATATTGTCAAGCAGCGGCGCAGGCCTAGGGTTTGCACA 480
consensus_7277#1 AGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCCANCCCCCAAGCCCAGATCGCACCA 92
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 AGAAAGGTGAGGTGGGGTGCCAAGATCAGGACCCCAACCCC--AAGCCCAGATCGCACCA 538
consensus_7277#1 CCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCA 152
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 CCTCTGAAGTGGAGAACAAGGATGGTGATCCTCTGTACAAGGCAGTTCTCATGATTCCCA 598
consensus_7277#1 CAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCACCAGCGAGGCC 212
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 CAAGGGATAGCACTCCTGCCATTCCTATGGACCTGATCGCGCTTGCTCGCCAGCGAGGCC 658
consensus_7277#1 TTTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAG 272
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 TCTTCTAGCAGATGGACCTTGCTATCAGTTGTTTTTAAACTATTGAACTGAACTCTGGAG 718
consensus_7277#1 GTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATC 332
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 GTCAGGTCACTATCTCCTTCCCAGTTTACCTTTGCTTTGGAGGGCTCAACTTGTCAAATC 778
consensus_7277#1 CCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAATATATCTGGTTTTTACCA 392
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 CCAACCGAAGGCACTGTTTAACTAATTTAGTGAGGTGGTTAGTATATCTGGTTTTTACCA 838
consensus_7277#1 CTGTGGTGTTCAGAAGTTGTAGTTGCCTGG-ACAAGCAGGTTTACTCGGGTTATTCAATG 451
consensus_7277#2 -TG-GGTGTTTTCAAATTGTATTTGCCTGGGACAACCAAGTTTACTCGG-TTATTCAATG 57
consensus_7277#0 CTGTGGTGTTCAGAAGTTGTAGTTGCCTGG-ACAAGCAGGTTTACTCGGGTTATTCAATG 897
** ****** ** ***** ******** **** ** ********** **********
consensus_7277#1 ATG-AATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCA 510
consensus_7277#2 ATGGAATCATGGAAACTGGCCGAAT-CCATCAAACATCTTTGGTGATATATATAAGTTCA 116
consensus_7277#0 ATG-AATCATGGAAACTTGCCGAATGCCATCAAACATCTTTGGTGATATATATAAGTTCA 956
*** ************* ******* **********************************
consensus_7277#1 CTGCATTGGAGAACTCTTGTGTTTCCTTCCTCTCCACTTGCCATTTCACTCAGCTTGGTA 570
consensus_7277#2 CTGCATTGGAGAAAAAAAAAA--------------------------------------- 137
consensus_7277#0 CT---------------------------------------------------------- 958
**
consensus_7277#1 CTTGTGTTTTTGCTATCTTTTGCACCTAAATCTGACATTGTTTCATATTTATAGTGCATA 630
consensus_7277#2 ------------------------------------------------------------
consensus_7277#0 ------------------------------------------------------------
consensus_7277#1 AGAAATCGAGAGCAGCTATGACTGAGCAAAAAAAAAAAAAAAA 673
consensus_7277#2 -------------------------------------------
consensus_7277#0 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||