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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 957 fasta sequence
[ATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGAGAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCGGCCGTTGCCACCTGACCTACGTCTNTGACAAGAAAGACTAAGCTGCTTGATTGCANAGGATGACGAACTTGTTATGGGAGAAAAAATGGGATGGCACGGATACCTTNGGNGAGGCACAGACTGCCGCCCTTTCGTACTGGGCGTTGAGCATAGGCCTCTTTTCTTCATTGGGCTCTGACTGCAATCAATCCGATATGGATCTTGTGAGAAAAANAAANNANTATNTATANNNNNTTNAANNNNNCCTCAGGGGGGGCCGTACCATTCGCCTAANGATGTGATAAGCCGCTTCTGGCCCGTTACACGTGGACTGGAAACTGCGTACCAATAATCCTGCATATTCCCTTCCCATGGGTAAAAAAAGTCCACACCCCTCCCATCACACNTANGATAGTGGCTATTTGCTATCTCGAGAGTGGTTGATGGATGNGANCNNNCCGCCGCTTTTTTTTTATCTCTCTCTCTGCTCTATNATTAATAAGCTTTTGTACATTCACCACATAAGGTGAGCTCTGTCCCATCTTTCTCACTATTATGTG]
[+] EMBL AW155592 [ATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGAGAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCGGCCGTTGCCACCTGACCTACGTCTNTGACAAGAAAGACTAAGCTGCTTGATTGCANAGGATGACGAACTTGTTATGGGAGAAAAAATGGGATGGCACGGATACCTTNGGNGAGGCACAGACTGCCGCCCTTTCGTACTGGGCGTTGAGCATAGGCCTCTTTTCTTCATTGGGCTCTGACTGCAATCAATCCGATATGGATCTTGTGAGAAAAANAAANNANTATNTATANNNNNTTNAANNNNNCCTCAGGGGGGGCCGTACCATTCGCCTAANGATGTGATAAGCCGCTTCTGGCCCGTTACACGTGGACTGGAAACTGCGTACCAATAATCCTGCATATTCCCTTCCCATGGGTAAAAAAAGTCCACACCCCTCCCATCACACNTANGATAGTGGCTATTTGCTATCTCGAGAGTGGTTGATGGATGNGANCNNNCCGCCGCTTTTTTTTTATCTCTCTCTCTGCTCTATNATTAATAAGCTTTTGTACATTCACCACATAAGGTGAGCTCTGTCCCATCTTTCTCACTATTATGTG]
consensusID : consensus_7279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence
[GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTTTCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCATGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGATAGAATGAGCGCCTACGGCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCTTGGGTGTCATGCAGGACCGCCAGTACTGCGGTACGTGGCAACTTGGACTACGTCTCTGGACAGAATGGACTAAGCTGCTTGATTGGCAAGGATGACGAACGTTGTTAATGGGAGAACAAATATGGGATGGGCTCCGGATAACCTTCCGGGCATGCACCAGATATGCGCGGCTATCCGTACCTGCCGATGGTGACATATGCCTCGTTTTCTACATCGTGCGTCTAGCTGGAAGTAAACGGTTTGGATCCTATTAGAAGAGATACTATAGACGGAAAACTCAAGTGGG]
[+] EMBL AW155283 [GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTTTCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCATGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGATAGAATGAGCGCCTACGGCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCTTGGGTGTCATGCAGGACCGCCAGTACTGCGGTACGTGGCAACTTGGACTACGTCTCTGGACAGAATGGACTAAGCTGCTTGATTGGCAAGGATGACGAACGTTGTTAATGGGAGAACAAATATGGGATGGGCTCCGGATAACCTTCCGGGCATGCACCAGATATGCGCGGCTATCCGTACCTGCCGATGGTGACATATGCCTCGTTTTCTACATCGTGCGTCTAGCTGGAAGTAAACGGTTTGGATCCTATTAGAAGAGATACTATAGACGGAAAACTCAAGTGGG]
consensusID : consensus_7279#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[ATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCNGCCGTGGCAACTGGACTACGTCTTTGACANAAAGGACTAAACTGCTGGATGCAAAGGATGACAAACTTGTTTATGGAGAAAAAATGGATGGGCACGGATACCTTCGNGCAGGCACAGACTGCCGCCTTTTGNTACTGGCGTTTGAGCATAGGCCTCTTTTCTTATTGGGCTCTGACTGCAATCATACNGATTGGATCTTGTGNGANNNNANCNNNNNANAAAAAAAAAAAAAAAAAAAAAAACTTAGGGGGGCCGGTCCCA]
[+] EMBL AW155413 [ATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCACCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACAAGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCGGTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCNGCCGTGGCAACTGGACTACGTCTTTGACANAAAGGACTAAACTGCTGGATGCAAAGGATGACAAACTTGTTTATGGAGAAAAAATGGATGGGCACGGATACCTTCGNGCAGGCACAGACTGCCGCCTTTTGNTACTGGCGTTTGAGCATAGGCCTCTTTTCTTATTGGGCTCTGACTGCAATCATACNGATTGGATCTTGTGNGANNNNANCNNNNNANAAAAAAAAAAAAAAAAAAAAAAACTTAGGGGGGCCGGTCCCA]
consensusID : consensus_7279#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTTTCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGTCTACACCACCCCCTGAAGATCAGCACAAGCCGCAGAAGACCAGTTGCTGTGCTCAGTACTACAAGTCGANGTGACGGAAGATTGACGCCTCGGCGGAGTGCCCAACAGAACTGCGTGCCGATCTCATGGTGCATGCAGACGGCATATTGGGCGTTGCCCTGACTACGTTTTGCAAAAAGCTAACTGTTGATTGCAGGATACCACTGTTATGGGAAAAATGGGGTGGCCGGACCTTGGGAGGCAAATGCGCCTTTTATAGTGTTACAAAGCCTTTTTTTTGGGGCTAAGGATCTACGATGGGGTTTGGAAAAAAAAATAAAAAAATTG]
[+] EMBL AW155284 [GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTTTCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGTCTACACCACCCCCTGAAGATCAGCACAAGCCGCAGAAGACCAGTTGCTGTGCTCAGTACTACAAGTCGANGTGACGGAAGATTGACGCCTCGGCGGAGTGCCCAACAGAACTGCGTGCCGATCTCATGGTGCATGCAGACGGCATATTGGGCGTTGCCCTGACTACGTTTTGCAAAAAGCTAACTGTTGATTGCAGGATACCACTGTTATGGGAAAAATGGGGTGGCCGGACCTTGGGAGGCAAATGCGCCTTTTATAGTGTTACAAAGCCTTTTTTTTGGGGCTAAGGATCTACGATGGGGTTTGGAAAAAAAAATAAAAAAATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7279#0 ------------------------------------------------------------
consensus_7279#2 ------------------------------------------------------------
consensus_7279#1 GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTT 60
consensus_7279#3 GGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACAACTT 60
consensus_7279#0 -----------------------------------------------ATCTTCGTCAAGA 13
consensus_7279#2 -----------------------------------------------ATCTTCGTCAAGA 13
consensus_7279#1 TCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGA 120
consensus_7279#3 TCAGATTGCTTAGGACGGGAATCTTGATTCTCCAGGCAATCATGCAGATCTTCGTCAAGA 120
*************
consensus_7279#0 CCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGAGAATGTCA 73
consensus_7279#2 CCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCA 73
consensus_7279#1 CCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCA 180
consensus_7279#3 CCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAATGTCA 180
**************************************************** *******
consensus_7279#0 AGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCG 133
consensus_7279#2 AGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCG 133
consensus_7279#1 AGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCG 240
consensus_7279#3 AGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCTTGATCTTTGCCG 240
************************************************************
consensus_7279#0 GCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCC 193
consensus_7279#2 GCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCC 193
consensus_7279#1 GCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCC 300
consensus_7279#3 GCAAGCAGCTTGAGGACGGCAGGACCCTGTCCGACTACAACATCCAGAAGGAGAGCACCC 300
************************************************************
consensus_7279#0 TCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCA 253
consensus_7279#2 TCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCA 253
consensus_7279#1 TCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAGGTCTACACCA 360
consensus_7279#3 TCCACCTCGTGCTGCGTCTGCGTGGTGGTGGTAAGAAGAGGAAGAAGAAG-TCTACACCA 359
************************************************** *********
consensus_7279#0 CCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACA 313
consensus_7279#2 CCCCCAAGAAGATCAAGCACAAGCGCAAGAAGACCAAGTTGGCTGTGCTCAAGTACTACA 313
consensus_7279#1 CCCCCAAGAAGATCAAGCACAAGCGCATGAAGACCAAGTTGGCTGTGCTCAAGTACTACA 420
consensus_7279#3 CCCCCT-GAAGATCA-GCACAAGCCGCAGAAGACCAG--TTGCTGTGCTCA-GTACTACA 414
***** ******** ******** ******** * ********** ********
consensus_7279#0 AGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCG 373
consensus_7279#2 AGGTCGACGGTGACGGAAAGATTGAGCGCCTCCGCCGCGAGTGCCCCAACGAGACCTGCG 373
consensus_7279#1 AGGTCGACGGTGACGGATAGAATGAGCGCCTACGGCGCGAGTGCCCCAACGAGACCTGCG 480
consensus_7279#3 AG-TCGANG-TGACGGA-AGATTGA-CGCCT-CGGCG-GAGTGCCC-AAC-AGAACTGCG 466
** **** * ******* *** *** ***** ** ** ******** *** *** *****
consensus_7279#0 GTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCGGC-CGTTGCCACCTG 432
consensus_7279#2 GTGCCGGTATCTTCATGGCTGCCATGCANGACCGCCAGTACTGCNGC-CGTGGCAACTGG 432
consensus_7279#1 GTGCCGGTATCTTCTTGGGTGTCATGCAGGACCGCCAGTACTGCGGTACGTGGCAACTTG 540
consensus_7279#3 -TGCCGATCTCATGGTG-----CATGCAG-ACGGC--ATATTGGG---CGTTGC--CCTG 512
***** * ** * ** ****** ** ** ** ** *** ** * *
consensus_7279#0 ACCTACGTCTNTG-ACAAGAAAGACTAAGCTGCTTGATTGCANAGGATGACGAAC-TTGT 490
consensus_7279#2 AC-TACGTCTTTG-ACANAAAGGACTAAACTGCTGGAT-GCAAAGGATGACAAAC-TTGT 488
consensus_7279#1 GACTACGTCTCTGGACAGAATGGACTAAGCTGCTTGATTGGCAAGGATGACGAACGTTGT 600
consensus_7279#3 AC-TACGTTTT---GCAAAAAG--CTAA-CTG-TTGATTGC--AGGATACCA----CTGT 558
***** * ** * **** *** * *** * ***** * ***
consensus_7279#0 TA-TGGGAGAAAAAAT--GGGATGG--CACGGATA--CCTTNGGNGAGGCAC-AGAC-TG 541
consensus_7279#2 TT-ATGGAGAAAAAAT--GGATGGG--CACGGATA--CCTTCGNGCAGGCAC-AGAC-TG 539
consensus_7279#1 TAATGGGAGAACAAATATGGGATGGGCTCCGGATAACCTTCCGGGCATGCACCAGATATG 660
consensus_7279#3 TA-TGGGA---AAAAT--GGGGTGG---CCGGA----CCTT--GGGAGGCAA-----ATG 598
* *** **** ** ** **** * * * *** **
consensus_7279#0 C-CGCCCTTTCGTACTGGGCGTTGA--GCATAGGCCTC-TTTTCTTCATTGGGC-TCTGA 596
consensus_7279#2 C-CGCCTTTTGNTACTGGCGTTTGA--GCATAGGCCTC-TTTTCTT-ATTGGGC-TCTGA 593
consensus_7279#1 CGCGGCTATCCGTACCTGCCGATGGTGACATATGCCTCGTTTTCTACATCGTGCGTCTAG 720
consensus_7279#3 C---GCCTTTTATA----GTGTT----ACA-AAGCCTTTTTTTTGGGGCTAAGGATCTA- 645
* * * ** * ** * **** **** * ***
consensus_7279#0 CTGCAATCAATCCGATATGGATCTTGTGAGAAAAANA-AANNANTATNTATANNNNNTTN 655
consensus_7279#2 CTGCAATCATACNGAT-TGGATCTTGTGNGANNNNANCNNNNNANAAAAAAAAAAAAAAA 652
consensus_7279#1 CTGGAAGTAAACGGTT-TGGATCCTATTAGAAGA-----GATACTATAGACGGAAAACTC 774
consensus_7279#3 ------------CGAT-GGGGTTTGGAAAAAAAAATAAAAAAATTG-------------- 678
* * ** * *
consensus_7279#0 AANNNNNCCTCAGGGGGGGCCGTACCATTCGCCTAANGATGTGATAAGCCGCTTCTGGCC 715
consensus_7279#2 AAAAAAAACTTAGGGGGGCCGGTCCCA--------------------------------- 679
consensus_7279#1 AAGTGGG----------------------------------------------------- 781
consensus_7279#3 ------------------------------------------------------------
consensus_7279#0 CGTTACACGTGGACTGGAAACTGCGTACCAATAATCCTGCATATTCCCTTCCCATGGGTA 775
consensus_7279#2 ------------------------------------------------------------
consensus_7279#1 ------------------------------------------------------------
consensus_7279#3 ------------------------------------------------------------
consensus_7279#0 AAAAAAGTCCACACCCCTCCCATCACACNTANGATAGTGGCTATTTGCTATCTCGAGAGT 835
consensus_7279#2 ------------------------------------------------------------
consensus_7279#1 ------------------------------------------------------------
consensus_7279#3 ------------------------------------------------------------
consensus_7279#0 GGTTGATGGATGNGANCNNNCCGCCGCTTTTTTTTTATCTCTCTCTCTGCTCTATNATTA 895
consensus_7279#2 ------------------------------------------------------------
consensus_7279#1 ------------------------------------------------------------
consensus_7279#3 ------------------------------------------------------------
consensus_7279#0 ATAAGCTTTTGTACATTCACCACATAAGGTGAGCTCTGTCCCATCTTTCTCACTATTATG 955
consensus_7279#2 ------------------------------------------------------------
consensus_7279#1 ------------------------------------------------------------
consensus_7279#3 ------------------------------------------------------------
consensus_7279#0 TG 957
consensus_7279#2 --
consensus_7279#1 --
consensus_7279#3 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||