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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1485 fasta sequence
[CGCCGCCGCCGCCGCCGCCGCTGCCGCCATGGCCACCGCGTCCTCGCACCACCGCGCGCGCCGCCGCCGGAGTCGGCGGCGGCGGCAACAACCACACCATCGCGCAGCGCAAGATCCTGCTCGACCCGGACTTCACCCCGCGGCTCCCGCGCCAGAGCGCGCTCTCCCTCTCCCTCTCCCAGCGGAACGCGCTCCCGCCCCGCAACGCCGACCGCTTCCCCCGCCTCCCCGACGGCCACCTCAACATCGTCCTCTACGTCCACAACCGCCCCCGCTACCTCCGCCTCGTCGTCGACAGCCTCTCCCGCGCCCACGGCATCGGGGAGGCGCTGCTCATCGTCAGCCACGACGGCTACTTCCCGGAGATGGACAAGATCGTGCAGACCATCACCTTCTGCCAGGTCAAGCAGATCTTCGCGCCCTACTCGCCGCACCTCTTCCCGGAGGCCTTCCCCGGCGTCTCCTCCGGTGACTGCCAGGGCAAGGACAAGGCGGCCGAGAAGCACTGCCAGGGCGACCCGGACCAGTACGGCAACCATCGCTCCCCGAGAATCGTCTCGCTCAAGCACCACTGGTGGTGGATGATGAACACCGTGTGGGATGGGCTGGATGAGACCAGGGACTTCGATGGCCACATCCTCTTCATCGAGGAGGATCATTACATCTTCCCCAATGCGTACCGCAATGCGCAGCTGCTTGTCGACTTGAAGCCTAGCAAGTGTCCCCAGTGCTATGCTATNAACTTGGCGCCATCGGATGTCAAGGCGAAAGGGGAAGGTTGGGAGAGCTTGGTTGCCGAGAAGATGGGTAACATTGGCTATGCCTTTCACAGGACAGTTTGGAGGAAGATTCATGCCAAAGCTAAGCAGTTCTGCACATTCGACGAGTACAATTGGGATANTACGATGTGGGGCACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGACCTAGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCAATGTCTGTGTGGATAATGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTAACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCTTCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCATACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTTGGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCGATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAAAGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTCACAGATGTGGATAAAGTTTACTCTTTTAAGCCCAAAAAAAAAGGA]
[+] EMBL CB667686 [CGCCGCCGCCGCCGCCGCCGCTGCCGCCATGGCCACCGCGTCCTCGCACCACCGCGCGCGCCGCCGCCGGAGTCGGCGGCGGCGGCAACAACCACACCATCGCGCAGCGCAAGATCCTGCTCGACCCGGACTTCACCCCGCGGCTCCCGCGCCAGAGCGCGCTCTCCCTCTCCCTCTCCCAGCGGAACGCGCTCCCGCCCCGCAACGCCGACCGCTTCCCCCGCCTCCCCGACGGCCACCTCAACATCGTCCTCTACGTCCACAACCGCCCCCGCTACCTCCGCCTCGTCGTCGACAGCCTCTCCCGCGCCCACGGCATCGGGGAGGCGCTGCTCATCGTCAGCCACGACGGCTACTTCCCGGAGATGGACAAGATCGTGCAGACCATCACCTTCTGCCAGGTCAAGCAGATCTTCGCGCCCTACTCGCCGCACCTCTTCCCGGAGGCCTTCCCCGGCGTCTCCTCCGGTGACTGCCAGGGCAAGGACAAGGCGGCCGAGAAGCACTGCCAGGGCGACCCGGACCAGTACGGCAACCATCGCTCCCCGAGAATCGTCTCGCTCAAGCACCACTGGTGGTGGATGATGAACACCGTGTGGGATGGGCTGGATGAGACCAGGGACTTCGATGGCCACATCCTCTTCATCGAGGAGGATCATTACATCTTCCCCAATGCGTACCGCAATGCGCAGCTGCTTGTCGACTTGAAGCCTAGCAAGTGTCCCCAGTGCTATGCTATNAACTTGGCGC ]
[+] EMBL CB619354 [ CTCGACCCGGACTTCACCCCGCGGCTCCCGCGCCAGAGCGCGCTCTCCCTCTCCCTCTCCCAGCGGAACGCGCTCCCGCCCCGCAACGCCGACCGCTTCCCCCGCCTCCCCGACGGCCACCTCAACATCGTCCTCTACGTCCACAACCGCCCCCGCTACCTCCGCCTCGTCGTCGACAGCCTCTCCCGCGCCCACGGCATCGGGGAGGCGCTGCTCATCGTTAGCCACGACGGCTACTTCCCGGAGATGGACAAGATCGTGCAGGCCATCACCTTCTGCCAGGTCAAGCAGATCTTCGCGCCCTACTCGCCGCACCTCTTCCCGGAGGCCTTCCCCGGCGTCTCCTCCGGTGACTGCCAGGGCAAGGACAAGGCGGCCGAGAAGCACTGCCAGGGCGACCCGGACCAGTACGGCAACCATCGCTCCCCGAGAATCGTCTCGCTCAAGCACCACTGGTGGTGGATGATGAACACCGTGTGGGATGGGCTGGATGAGACCAGGGACTTCGATGGCCACATCCTCTTCATCGAGGAGGATCATTACATCTTCCCCAATGCGTACCGCAATGCGCAGCTGCTTGTCGACTTGAAGCCTAGCAAGTGTCCCCAGTGCTATGCTATAAACTTGGCGCCATCGGATGTCAAGGCGAAAGGGGAAGGTTGGGAGAGCTTGGTTGCCGAGAAGATGGGTAACATTGGCTATGCCTTTCACAGGACAGTTTGGAGGAAGATTCATGCCAAAGCTAAGCAGTTCTGCACATTCGACGAGTACAATTGGGATANTACGATGTGGGGCACCGTGTATCCGTC ]
[-] EMBL CB619355 [ GTTGGGAGAGCTTGGTTGCCGAGAAGATGGGTAACATTGGCTATGCCTTCAACAGGACAGTTTGGAGGAAGATTCATGCCAAAGCTAAGCAGTTCTGCACATTCGACGAGTACAATTGGGATATAACGATGTGGGCAACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGACCTAGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCAATGTCTGTGTGGATAATGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTAACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCTTCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCATACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTTGGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCGATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAAAGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTCACAGATGTGGATAAAGTTTACTCTTTTAAGCCCAAAAAAAAAGGA]
consensusID : consensus_7288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[AGAGGACAAGACAAGGGGGATATAACGATGTGGGCAACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGACCTGGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCAAAGTCTGTGTGGATAAAGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTAACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCTTCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCATACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTTGGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCGATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAAAGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTCACAGATGTGGATAAAGTTTACTCTTTTAAGCACATGAGTTAGCATTTATTTGCTACTTGAGATCTTGCCATGTTTCCTTCTGTCTAAAAAAAAAAAAA]
[-] EMBL CA759682 [AGAGGACAAGACAAGGGGGATATAACGATGTGGGCAACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGACCTGGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCAAAGTCTGTGTGGATAAAGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTAACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCTTCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCATACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTTGGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCGATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAAAGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTCACAGATGTGGATAAAGTTTACTCTTTTAAGCACATGAGTTAGCATTTATTTGCTACTTGAGATCTTGCCATGTTTCCTTCTGTCTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7288#0 CGCCGCCGCCGCCGCCGCCGCTGCCGCCATGGCCACCGCGTCCTCGCACCACCGCGCGCG 60
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 CCGCCGCCGGAGTCGGCGGCGGCGGCAACAACCACACCATCGCGCAGCGCAAGATCCTGC 120
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 TCGACCCGGACTTCACCCCGCGGCTCCCGCGCCAGAGCGCGCTCTCCCTCTCCCTCTCCC 180
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 AGCGGAACGCGCTCCCGCCCCGCAACGCCGACCGCTTCCCCCGCCTCCCCGACGGCCACC 240
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 TCAACATCGTCCTCTACGTCCACAACCGCCCCCGCTACCTCCGCCTCGTCGTCGACAGCC 300
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 TCTCCCGCGCCCACGGCATCGGGGAGGCGCTGCTCATCGTCAGCCACGACGGCTACTTCC 360
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 CGGAGATGGACAAGATCGTGCAGACCATCACCTTCTGCCAGGTCAAGCAGATCTTCGCGC 420
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 CCTACTCGCCGCACCTCTTCCCGGAGGCCTTCCCCGGCGTCTCCTCCGGTGACTGCCAGG 480
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 GCAAGGACAAGGCGGCCGAGAAGCACTGCCAGGGCGACCCGGACCAGTACGGCAACCATC 540
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 GCTCCCCGAGAATCGTCTCGCTCAAGCACCACTGGTGGTGGATGATGAACACCGTGTGGG 600
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 ATGGGCTGGATGAGACCAGGGACTTCGATGGCCACATCCTCTTCATCGAGGAGGATCATT 660
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 ACATCTTCCCCAATGCGTACCGCAATGCGCAGCTGCTTGTCGACTTGAAGCCTAGCAAGT 720
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 GTCCCCAGTGCTATGCTATNAACTTGGCGCCATCGGATGTCAAGGCGAAAGGGGAAGGTT 780
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 GGGAGAGCTTGGTTGCCGAGAAGATGGGTAACATTGGCTATGCCTTTCACAGGACAGTTT 840
consensus_7288#1 ------------------------------------------------------------
consensus_7288#0 GGAGGAAGATTCATGCCAAAGCTAAGCAGTTCTGCACATTCGACGAGTACAATTGGGATA 900
consensus_7288#1 -------------------------------------AGAGGACAAG-ACAAGGGGGATA 22
* *** ** **** ******
consensus_7288#0 NTACGATGTGGGGCACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGAC 960
consensus_7288#1 TAACGATGTGGGCAACCGTGTATCCGTCGTTCGGATCTCCTGTTTACAGCCTGAGGGGAC 82
********** **********************************************
consensus_7288#0 CTAGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCA 1020
consensus_7288#1 CTGGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGGCTTGAGCA 142
** *********************************************************
consensus_7288#0 ATGTCTGTGTGGATAATGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTA 1080
consensus_7288#1 AAGTCTGTGTGGATAAAGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTA 202
* ************** *******************************************
consensus_7288#0 ACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCT 1140
consensus_7288#1 ACATCAAAGCTAACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCT 262
************************************************************
consensus_7288#0 TCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCAT 1200
consensus_7288#1 TCAAAGGATGGGGTGGCTGGGGTGATAAGCGTGATCAGGAGCTCTGTCTCAGTTTTGCAT 322
************************************************************
consensus_7288#0 ACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTT 1260
consensus_7288#1 ACATGCACCATTTTAAAGACCCATCATCTCCTTGATGCAGGGTATAGGCACACGGATTTT 382
************************************************************
consensus_7288#0 GGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCG 1320
consensus_7288#1 GGCATAGCTGCCGCCTTGTTGTATTATTGTTCGGTATCATTCATTCTTACACACGGTTCG 442
************************************************************
consensus_7288#0 ATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAA 1380
consensus_7288#1 ATATAAATAGCAGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAA 502
************************************************************
consensus_7288#0 AGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTC 1440
consensus_7288#1 AGACATTGCTGTTAGAGTTGGATCAATATCCCAAACTGTATGACTTAAGTAGTTAAGCTC 562
************************************************************
consensus_7288#0 ACAGATGTGGATAAAGTTTACTCTTTTAAGCCCAAAAAAAAAGGA--------------- 1485
consensus_7288#1 ACAGATGTGGATAAAGTTTACTCTTTTAAGCACATGAGTTAGCATTTATTTGCTACTTGA 622
******************************* ** * *
consensus_7288#0 --------------------------------------
consensus_7288#1 GATCTTGCCATGTTTCCTTCTGTCTAAAAAAAAAAAAA 660
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||