cluster # 7296

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7296 cluster # 7296 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7296#0 length = 1038 sequences # 3

consensus_7296#1 length = 110 sequences # 1

consensusID : consensus_7296#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1038
fasta sequence

                              [TCAGCGACGTACAGTACAGATCGTTCGCAATAAAGTTAGACTTCTCGTCTCTCTTTGTGCTTGTGCTTAGTTGTCCGTGCTAGAAGACGGCAATGGCGTCGACGGATCCCATGACCCGCCGCTTCGCCGTCGCGTGCGGCGTGCTCAGCCAGTACGTCAAGGCCAACTCCTCGCAGCCGTCGACGGCGGCGCCGGT-GGCTCAAGGTGTGAGTGGCCTCATGGCCGCCGCCGCCGCCGCCGCCGCGGCGCCTGTGGTCCAGGAACCCGGATGCGAGGTGGACGGCGGGGGGCAGCAGTTCACGATCTTCTACGCCGGGAAGGTGGTGGTGATCGACCGCTGCACGCCGGCCATGGCGGCCGAGCTGATGCGGTTCGCGTCGGCGGCGCAGGGCGGCGGCGGCGCGCCAGAGGCGCCGCCCGCGCTGGTGGACATGCCGATCGCGAGGAAGGCGTCGCTGAAGCGGTTCCTGGCGAAGCGCAAGGCCACCCCCGCCTCCGCGCGGTCGTCGTACGTCGTCCGTGCTGCGGCGGCGGAGGAGGAGCAGCCGCCGGCGAAGAAAGCGAAGGCGGCCGTGGAGAGGCGCGAGGATTGGCTCGCGCTGGGAAGCCTTGGACACATGCACTCGCGCTGATGATCATCGCCACGACGTCACGTCTGCGATTTGAGAATTGAGAGCTCGATCGATTGATCGCCATGTGGTCACCCGGTAGCCGATGCTGCAAGGCCGGTCGAGTTGGAAGATGGTTCTCGTCGCATTAACGGCCTTGAGTTGATTTCGCCGAGCCTGACCTTGAGTTGATTACCATGGAAGTATGAAGATTTCGTGATTAGCAGTTACCCTAGTTATCGCGGCGTATAATTAAGCACGGTCACTGAAGCGCAATGGCCTTGAGTCGGTAGATCAGGACTAGAGAGGGGTGTATGGATCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAATGATATAAAATTCCTTCGACTGTTCTGAAAAAAAAAAA]

[+] EMBL AK070649             [TCAGCGACGTACAGTACAGATCGTTCGCAATAAAGTTAGACTTCTCGTCTCTCTTTGTGCTTGTGCTTAGTTGTCCGTGCTAGAAGACGGCAATGGCGTCGACGGATCCCATGACCCGCCGCTTCGCCGTCGCGTGCGGCGTGCTCAGCCAGTACGTCAAGGCCAACTCCTCGCAGCCGTCGACGGCGGCGCCGGT GGCTCAAGGTGTGAGTGGCCTCATGGCCGCCGCCGCCGCCGCCGCCGCGGCGCCTGTGGTCCAGGAACCCGGATGCGAGGTGGACGGCGGGGGGCAGCAGTTCACGATCTTCTACGCCGGGAAGGTGGTGGTGATCGACCGCTGCACGCCGGCCATGGCGGCCGAGCTGATGCGGTTCGCGTCGGCGGCGCAGGGCGGCGGCGGCGCGCCAGAGGCGCCGCCCGCGCTGGTGGACATGCCGATCGCGAGGAAGGCGTCGCTGAAGCGGTTCCTGGCGAAGCGCAAGGCCACCCCCGCCTCCGCGCGGTCGTCGTACGTCGTCCGTGCTGCGGCGGCGGAGGAGGAGCAGCCGCCGGCGAAGAAAGCGAAGGCGGCCGTGGAGAGGCGCGAGGATTGGCTCGCGCTGGGAAGCCTTGGACACATGCACTCGCGCTGATGATCATCGCCACGACGTCACGTCTGCGATTTGAGAATTGAGAGCTCGATCGATTGATCGCCATGTGGTCACCCGGTAGCCGATGCTGCAAGGCCGGTCGAGTTGGAAGATGGTTCTCGTCGCATTAACGGCCTTGAGTTGATTTCGCCGAGCCTGACCTTGAGTTGATTACCATGGAAGTATGAAGATTTCGTGATTAGCAGTTACCCTAGTTATCGCGGCGTATAATTAAGCACGGTCACTGAAGCGCAATGGCCTTGAGTCGGTAGATCAGGACTAGAGAGGGGTGTATGGATCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAATGATATAAAATTCCTTC                     ]
[+] EMBL AU093851             [                     CGTTCGCAATAAAGTNAGACTTCTCGTCTCTNTTTGTGCTTGTCCTTAGTTGTCCGTGCTAGAAGACGGCAATGGCGTCGACGGATCCCATGACCCGCCGCTTCGCCGTCGCGTGCGGCGTGCTCAGCCAGTACGTCAAGGCCAACTCCTCGCAGCCGTCNACGGCGGCGCCGGTGGGCTCAAGGTGTNANTGGCCTCATGGCCGCCGCCGCCGCCGCCGCCGCGGC NCTGTGGTCCAGGAACCCGGATGCAAGGTGGACGGCGGGGGGCAGCAGTTCACGATCTTCTACGCCGGGAAGGTGGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU093852             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAGCAGCNGCCGGCGAAGAAAGCGAAGGCGNCCGTGGAGAGGCGCGAGGATTGGCTCGCGCTGGGAAGCCTTGGACACATGCACTCGCGCTGATGATCATCGCCACGACGTCACGTCTGCGATTTGAGAATTGAGAGCTCGATCGATTGATCGCCATGTGGTCACCCGGTAGCCGATGCTGCAAGGCCGGTCGAGTTGGAAGATGGTTCTCGTCGCATTAACGGCCTTGAGTTGATTTCGCCGAGCCTGACCTTGAGTTGATTACCATGGAAGTATGAAGATTTCGTGATTAGCAGTTACCCTAGTTATCGCGGCGTATAATTAAGCACGGTCACTGAAGCGCAATGGCCTTGAGTCGGTAGATCAGGACTAGAGAGGGGTGTATGGATCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAATGATATAAAATTCCTTCGACTGTTCTGAAAAAAAAAAA]




>consensus_7296#0
TCAGCGACGTACAGTACAGATCGTTCGCAATAAAGTTAGACTTCTCGTCTCTCTTTGTGC
TTGTGCTTAGTTGTCCGTGCTAGAAGACGGCAATGGCGTCGACGGATCCCATGACCCGCC
GCTTCGCCGTCGCGTGCGGCGTGCTCAGCCAGTACGTCAAGGCCAACTCCTCGCAGCCGT
CGACGGCGGCGCCGGTGGCTCAAGGTGTGAGTGGCCTCATGGCCGCCGCCGCCGCCGCCG
CCGCGGCGCCTGTGGTCCAGGAACCCGGATGCGAGGTGGACGGCGGGGGGCAGCAGTTCA
CGATCTTCTACGCCGGGAAGGTGGTGGTGATCGACCGCTGCACGCCGGCCATGGCGGCCG
AGCTGATGCGGTTCGCGTCGGCGGCGCAGGGCGGCGGCGGCGCGCCAGAGGCGCCGCCCG
CGCTGGTGGACATGCCGATCGCGAGGAAGGCGTCGCTGAAGCGGTTCCTGGCGAAGCGCA
AGGCCACCCCCGCCTCCGCGCGGTCGTCGTACGTCGTCCGTGCTGCGGCGGCGGAGGAGG
AGCAGCCGCCGGCGAAGAAAGCGAAGGCGGCCGTGGAGAGGCGCGAGGATTGGCTCGCGC
TGGGAAGCCTTGGACACATGCACTCGCGCTGATGATCATCGCCACGACGTCACGTCTGCG
ATTTGAGAATTGAGAGCTCGATCGATTGATCGCCATGTGGTCACCCGGTAGCCGATGCTG
CAAGGCCGGTCGAGTTGGAAGATGGTTCTCGTCGCATTAACGGCCTTGAGTTGATTTCGC
CGAGCCTGACCTTGAGTTGATTACCATGGAAGTATGAAGATTTCGTGATTAGCAGTTACC
CTAGTTATCGCGGCGTATAATTAAGCACGGTCACTGAAGCGCAATGGCCTTGAGTCGGTA
GATCAGGACTAGAGAGGGGTGTATGGATCTGACAAGTACTGTAGTATATTGTATCCCGTT
TGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAATGATATAAAATTCCTTCGAC
TGTTCTGAAAAAAAAAAA

consensusID : consensus_7296#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 110
fasta sequence

                              [TCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CB096880             [TCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7296#1
TCTGACAAGTACTGTAGTATATTGTATCCCGTTTGAATTTTTTTTCGATTCCTATGGGGA
CTGAATTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7296#0      TCAGCGACGTACAGTACAGATCGTTCGCAATAAAGTTAGACTTCTCGTCTCTCTTTGTGC 60
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      TTGTGCTTAGTTGTCCGTGCTAGAAGACGGCAATGGCGTCGACGGATCCCATGACCCGCC 120
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      GCTTCGCCGTCGCGTGCGGCGTGCTCAGCCAGTACGTCAAGGCCAACTCCTCGCAGCCGT 180
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      CGACGGCGGCGCCGGTGGCTCAAGGTGTGAGTGGCCTCATGGCCGCCGCCGCCGCCGCCG 240
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      CCGCGGCGCCTGTGGTCCAGGAACCCGGATGCGAGGTGGACGGCGGGGGGCAGCAGTTCA 300
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      CGATCTTCTACGCCGGGAAGGTGGTGGTGATCGACCGCTGCACGCCGGCCATGGCGGCCG 360
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      AGCTGATGCGGTTCGCGTCGGCGGCGCAGGGCGGCGGCGGCGCGCCAGAGGCGCCGCCCG 420
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      CGCTGGTGGACATGCCGATCGCGAGGAAGGCGTCGCTGAAGCGGTTCCTGGCGAAGCGCA 480
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      AGGCCACCCCCGCCTCCGCGCGGTCGTCGTACGTCGTCCGTGCTGCGGCGGCGGAGGAGG 540
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      AGCAGCCGCCGGCGAAGAAAGCGAAGGCGGCCGTGGAGAGGCGCGAGGATTGGCTCGCGC 600
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      TGGGAAGCCTTGGACACATGCACTCGCGCTGATGATCATCGCCACGACGTCACGTCTGCG 660
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      ATTTGAGAATTGAGAGCTCGATCGATTGATCGCCATGTGGTCACCCGGTAGCCGATGCTG 720
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      CAAGGCCGGTCGAGTTGGAAGATGGTTCTCGTCGCATTAACGGCCTTGAGTTGATTTCGC 780
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      CGAGCCTGACCTTGAGTTGATTACCATGGAAGTATGAAGATTTCGTGATTAGCAGTTACC 840
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      CTAGTTATCGCGGCGTATAATTAAGCACGGTCACTGAAGCGCAATGGCCTTGAGTCGGTA 900
consensus_7296#1      ------------------------------------------------------------
                                                                                  

consensus_7296#0      GATCAGGACTAGAGAGGGGTGTATGGATCTGACAAGTACTGTAGTATATTGTATCCCGTT 960
consensus_7296#1      ---------------------------TCTGACAAGTACTGTAGTATATTGTATCCCGTT 33
                                                 *********************************

consensus_7296#0      TGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAATGATATAAAATTCCTTCGAC 1020
consensus_7296#1      TGAATTTTTTTTCGATTCCTATGGGGACTGAATTGATTAAAAAAAAAAAAAAAAAAAAAA 93
                      ****************************************  * * ****        * 

consensus_7296#0      TGTTCTGAAAAAAAAAAA 1038
consensus_7296#1      AAAAAAAAAAAAAAAAA- 110
                             **********