cluster # 7297

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Oryza sativa
cluster # 7297 cluster # 7297 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7297#0 length = 828 sequences # 3

consensus_7297#1 length = 395 sequences # 1

consensusID : consensus_7297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 828
fasta sequence

                              [AAATTCCAAAGAGCCAAAAACCCTAGCGCGCCGCATCCCCCGCCGCCGCCTCCGCCTCCGCCGCGGGTAAATCCCTCCTCGTCGTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGGCCTTTTGGGCAAGGAAGAGGCTCATGATAATGCTAAAAGGATCGAAGAGGTATGCTTTGCCTCTGCAGACGAGCATTTCAAGGAGGAGCCTGATGGGGATGGGAGTTCTGCTGTCCAGCTGTACGCAAAGGAAACTAGCAAGTTGATGCTGGAAGTTCTGAAAAGAGGGCCAAGGACCACTGTGGAACCAGAAGTACCTGTTGCTGATACACCTCTTGAGCCTGCTGATTCTGTATTTGATATATCTGGTGGCAAGCGTGCGTTTATTGAGGCAGATGAAGCGAAGGAACTTTTGAGCCCGCTTATCAAACCAGGAAATGCATATAAACGGATTTGCTTCAGCAACAGGAGCTTTGGTATTGGTGCTGCCAATGTTGCTGGACCTATTCTGGAATCAATCAAAAAGCAACTCACAGAGGTGGATATATCAGATTTTGTTGCTGGCAGACCTGAGGATGAAGCCCTTGATGTGATGCGCATCTTCTCAAAAGCTTTAGAAGGCGCTGTACTGAGATACTTGAACATCTC]

[+] EMBL CF280516             [AAATTCCAAAGAGCCAAAAACCCTAGCGCGCCGCATCCCCCGCCGCCGCCTCCGCCTCCGCCGCGGGTAAATCCCTCCTCGTCGTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGGCCTTTTGGGCAAGGAAGAGGCTCATGATAATGCTAAAAGGATCGAAGAGGTATGCTTTGCCTCTGCAGACGAGCATTTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB668738             [                                                                        CCCTCCTCGTCGTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGGCCTTTTGGGCAAGGAAGAGGCTCATGATAATGCTAAAAGGATCGAAGAGGTATGCTTTGCCTCTGCAGACGAGCATTTCAAGGAGGAGCCTGATGGGGATGGGAGTTCTGCTGTCCAGCTGTACGCAAAGGAAACTAGCAAGTTGATGCTGGAAGTTCTGAAAAGAGGGCCAAGGACCACTGTGGAACCAGAAGTACCTGTTGCTGATACACCTCTTGAGCCTGCTGATTCTGTATTTGATATATCTGGTGGCAAGCGTGCGTTTATTGAGGCAGATGAAGCGAAGGAACTTTTGAGCCCGCTTATCAAACCAGGAAATGCATATAAACGGATTTGCTTCAGCAACAGGAGCTTTGGTATTGGTGCTGCCAATGTTGCTGGACCTATTCTGGAATCAATCAAAAAGCAACTCACAGAGGTGGATATATCAGATTTTGTTGCTGGCAGACCTGAGGATGAAGCCCTTGATGTGATGCGCATCTTCTCAAAAGCTTTAGAAGGCGCTGTACTGAGATACTTGAACATCTC]
[+] EMBL CF305739             [                                                                                                                                     TGGTTGCTG TACTGCC TATTTT ACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGGCCTTTTGGGCAAGGAAGAGGCTCATGATAATGCTAAAAGGATCGAAGAGGTATGCTTTGCCTCTGCAGACGAGCATTTCAAGGAGGAGCCTGATGGGGATGGGAGTTCTGCTGTCCAGCTGTACGCAAAGGAAACTAGCAAGTTGATGCTGGAAGTTCTGAAAAGAGGGCCAAGGACCACTGTGGAACCAGAAGTACCTGTTGCTGATACACCTCTTGAGCCTGCTGATTCTGTATTTGATATATCTGGTGGCAAGCGTGCGTTTATTGAGGC                                                                                                                                                                                                                                                               ]




>consensus_7297#0
AAATTCCAAAGAGCCAAAAACCCTAGCGCGCCGCATCCCCCGCCGCCGCCTCCGCCTCCG
CCGCGGGTAAATCCCTCCTCGTCGTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACA
GGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGA
TTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCAT
GCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGG
CCTTTTGGGCAAGGAAGAGGCTCATGATAATGCTAAAAGGATCGAAGAGGTATGCTTTGC
CTCTGCAGACGAGCATTTCAAGGAGGAGCCTGATGGGGATGGGAGTTCTGCTGTCCAGCT
GTACGCAAAGGAAACTAGCAAGTTGATGCTGGAAGTTCTGAAAAGAGGGCCAAGGACCAC
TGTGGAACCAGAAGTACCTGTTGCTGATACACCTCTTGAGCCTGCTGATTCTGTATTTGA
TATATCTGGTGGCAAGCGTGCGTTTATTGAGGCAGATGAAGCGAAGGAACTTTTGAGCCC
GCTTATCAAACCAGGAAATGCATATAAACGGATTTGCTTCAGCAACAGGAGCTTTGGTAT
TGGTGCTGCCAATGTTGCTGGACCTATTCTGGAATCAATCAAAAAGCAACTCACAGAGGT
GGATATATCAGATTTTGTTGCTGGCAGACCTGAGGATGAAGCCCTTGATGTGATGCGCAT
CTTCTCAAAAGCTTTAGAAGGCGCTGTACTGAGATACTTGAACATCTC

consensusID : consensus_7297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [ATCTGATNGTCGGNGCCCGCGTCCGNAAAATCCNCCTTCGCCGCCTCCGCCTCCGCCGNGGGTAAATCCCTCCTCGTCCTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACANAGTCCATATTTTCNCGCAAGTACCGCCTTTTGGGCNAGGAAGANGCNCACGATATATTGTCTTATAATAGTGATCGAAGAGGTATGCCTCGCCNCNGCAGACNANCATTTCNANGANGACCTGAT]

[+] EMBL AA754522             [ATCTGATNGTCGGNGCCCGCGTCCGNAAAATCCNCCTTCGCCGCCTCCGCCTCCGCCGNGGGTAAATCCCTCCTCGTCCTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTGTGGAGAGGATGACCAAGAACCTTTCCACANAGTCCATATTTTCNCGCAAGTACCGCCTTTTGGGCNAGGAAGANGCNCACGATATATTGTCTTATAATAGTGATCGAAGAGGTATGCCTCGCCNCNGCAGACNANCATTTCNANGANGACCTGAT]




>consensus_7297#1
ATCTGATNGTCGGNGCCCGCGTCCGNAAAATCCNCCTTCGCCGCCTCCGCCTCCGCCGNG
GGTAAATCCCTCCTCGTCCTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACAGGGGA
GGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGATTTCC
AACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCATGCTTG
TGGAGAGGATGACCAAGAACCTTTCCACANAGTCCATATTTTCNCGCAAGTACCGCCTTT
TGGGCNAGGAAGANGCNCACGATATATTGTCTTATAATAGTGATCGAAGAGGTATGCCTC
GCCNCNGCAGACNANCATTTCNANGANGACCTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7297#0      AAATTCCAAAGAGCCAAAAACCCTAGCGCGCCGCATCCCCCGCCGCCGCCTCCGCCTCCG 60
consensus_7297#1      ----ATCTGATNGTCGGNG-CCCGCGTCCGNAAAATCCNCCTTCGCCGCCTCCGCCTCCG 55
                            *  *  * *     ***  *  **    **** **  *****************

consensus_7297#0      CCGCGGGTAAATCCCTCCTCGTCGTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACA 120
consensus_7297#1      CCGNGGGTAAATCCCTCCTCGTCCTCTCCTCCGCTCCTCGTGCCATCTCGCGGCTGAACA 115
                      *** ******************* ************************************

consensus_7297#0      GGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGA 180
consensus_7297#1      GGGGAGGGGATCCTGGTTGCTGTTACTGCCATATTTTCACATGGATTCGACTAAGCAAGA 175
                      ************************************************************

consensus_7297#0      TTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCAT 240
consensus_7297#1      TTTCCAACCCCGGACATTCTCCATCAAACTGTGGCCACCAAGTGAAAGCACTCGTCTCAT 235
                      ************************************************************

consensus_7297#0      GCTTGTGGAGAGGATGACCAAGAACCTTTCCACAGAGTCCATATTTTCTCGCAAGTACGG 300
consensus_7297#1      GCTTGTGGAGAGGATGACCAAGAACCTTTCCACANAGTCCATATTTTCNCGCAAGTACCG 295
                      ********************************** ************* ********* *

consensus_7297#0      CCTTTTGGGCAAGGAAGAGGCTCATGATAA-------TGCTAAAAGGATCGAAGAGGTAT 353
consensus_7297#1      CCTTTTGGGCNAGGAAGANGCNCACGATATATTGTCTTATAATAGTGATCGAAGAGGTAT 355
                      ********** ******* ** ** ****        *   * *  **************

consensus_7297#0      GCTTTGCCTCTGCAGACGAGCATTTCAAGGAGGAGCCTGATGGGGATGGGAGTTCTGCTG 413
consensus_7297#1      GCCTCGCCNCNGCAGACNANCATTTCNANGANGA-CCTGAT------------------- 395
                      ** * *** * ****** * ****** * ** ** ******                   

consensus_7297#0      TCCAGCTGTACGCAAAGGAAACTAGCAAGTTGATGCTGGAAGTTCTGAAAAGAGGGCCAA 473
consensus_7297#1      ------------------------------------------------------------
                                                                                  

consensus_7297#0      GGACCACTGTGGAACCAGAAGTACCTGTTGCTGATACACCTCTTGAGCCTGCTGATTCTG 533
consensus_7297#1      ------------------------------------------------------------
                                                                                  

consensus_7297#0      TATTTGATATATCTGGTGGCAAGCGTGCGTTTATTGAGGCAGATGAAGCGAAGGAACTTT 593
consensus_7297#1      ------------------------------------------------------------
                                                                                  

consensus_7297#0      TGAGCCCGCTTATCAAACCAGGAAATGCATATAAACGGATTTGCTTCAGCAACAGGAGCT 653
consensus_7297#1      ------------------------------------------------------------
                                                                                  

consensus_7297#0      TTGGTATTGGTGCTGCCAATGTTGCTGGACCTATTCTGGAATCAATCAAAAAGCAACTCA 713
consensus_7297#1      ------------------------------------------------------------
                                                                                  

consensus_7297#0      CAGAGGTGGATATATCAGATTTTGTTGCTGGCAGACCTGAGGATGAAGCCCTTGATGTGA 773
consensus_7297#1      ------------------------------------------------------------
                                                                                  

consensus_7297#0      TGCGCATCTTCTCAAAAGCTTTAGAAGGCGCTGTACTGAGATACTTGAACATCTC 828
consensus_7297#1      -------------------------------------------------------