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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence
[GCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTCCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCGTCGAGTCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCACCGACACCGTCGTCAAGCTCAACCTCCAGATGCTCGCCGCCGTCGCCGAGGACTCCTCCTCTGCTTCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATGGCGGCGGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTTTTCTTTTTACTTTTTTTTTTAGTTTTGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAACAACTGTTGTGGCATAAGGAAGCCTGTTTTG]
[+] EMBL AK107448 [GCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTCCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCGTCGAGTCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCACCGACACCGTCGTCAAGCTCAACCTCCAGATGCTCGCCGCCGTCGCCGAGGACTCCTCCTCTGCTTCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATGGCGGCGGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTTTTCTTTTTACTTTTTTTTTTAGTTTTGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAACAACTGTTGTGGCATAAGGAAGCCTGTTTTG]
[+] EMBL AU069533 [GCAACGTGCACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTTCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGNCACATCATCAGCTt ]
consensusID : consensus_7300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[GCAACGTGCACGTCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGGCGGCGGTCCCGCCCCCGCCCCGCCTGACTGCGTCGACGGCGGGTCCTACGTCGTGGACGTCCCCGACGGGAACCCGGGGGAGGACACCAGGATGTCTACCCGACAAGGACATGAAGCTCACCGCTCCGTAATGCTGACGTCTGTGGCCGGGGATTCCTACTGATGTATAGGGGGTCTCGCTTATGTGAGGCCTCCGCATACTTGGAGGCAGGCAGAGGGCGGGCCGAGTGCGTGCGTGTTTGAGTGCGTTACAGTTTATCGTTTCTTAGCCTTATCATTACTCGGAGTCCGCGCTCGTGGCTGTACAAGCTGCGGTGGGGTACTTGTAACAT]
[+] EMBL BE040660 [GCAACGTGCACGTCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTGTGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTCCGCACCTGCGCCCTCGCCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTCCCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGCTTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCCAGCCGCCCGGCGGCGGTCCCGCCCCCGCCCCGCCTGACTGCGTCGACGGCGGGTCCTACGTCGTGGACGTCCCCGACGGGAACCCGGGGGAGGACACCAGGATGTCTACCCGACAAGGACATGAAGCTCACCGCTCCGTAATGCTGACGTCTGTGGCCGGGGATTCCTACTGATGTATAGGGGGTCTCGCTTATGTGAGGCCTCCGCATACTTGGAGGCAGGCAGAGGGCGGGCCGAGTGCGTGCGTGTTTGAGTGCGTTACAGTTTATCGTTTCTTAGCCTTATCATTACTCGGAGTCCGCGCTCGTGGCTGTACAAGCTGCGGTGGGGTACTTGTAACAT]
consensusID : consensus_7300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence
[ATTTGGGCTTTTCGATACAAGACTCGNCCAATCAATGGTTCGGAAGCATTAGGCCCATTAGGNATTCGATTTGGCTAGCTGGATGGCTAGGAGGAGCTCGCCGGTGATGAAATGATGGCCGGGCGGTGAAATACGGAGGAGAGGGCGGTGCTGGAGCTGGCGGTGATGGCGCACCACATGTTCCCGCCCGGCACCACCACGGTGATGGAGCATCTTCGTCCGCAGTCCGCACCTGCTCGATCCCGCGGCGACGGCGCCAGCGTCGGCAGTGTCCGCGAGGTCACCATCGTGTCAGCCTCCCGGCATCCACCAGCACCGAGCGCCTCGAGATGCTTGACGACTACCGCCACATCATTATCTTCTGCATCGGCGGCGGCCATCATCGCCTCCGCAACTACCGCTCCGTCACCGAGTTCCAGTCGCCCGGCGCTGCCCCGGCGTACTGCGTCGTGGAAGAGAGAAAGGAGGGAGAAAGAGGGAAGATAGAT]
[-] EMBL AU065165 [ATTTGGGCTTTTCGATACAAGACTCGNCCAATCAATGGTTCGGAAGCATTAGGCCCATTAGGNATTCGATTTGGCTAGCTGGATGGCTAGGAGGAGCTCGCCGGTGATGAAATGATGGCCGGGCGGTGAAATACGGAGGAGAGGGCGGTGCTGGAGCTGGCGGTGATGGCGCACCACATGTTCCCGCCCGGCACCACCACGGTGATGGAGCATCTTCGTCCGCAGTCCGCACCTGCTCGATCCCGCGGCGACGGCGCCAGCGTCGGCAGTGTCCGCGAGGTCACCATCGTGTCAGCCTCCCGGCATCCACCAGCACCGAGCGCCTCGAGATGCTTGACGACTACCGCCACATCATTATCTTCTGCATCGGCGGCGGCCATCATCGCCTCCGCAACTACCGCTCCGTCACCGAGTTCCAGTCGCCCGGCGCTGCCCCGGCGTACTGCGTCGTGGAAGAGAGAAAGGAGGGAGAAAGAGGGAAGATAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7300#0 ------------------------------------------------------------
consensus_7300#1 ------------------------------------------------------------
consensus_7300#2 ATTTGGGCTTTTCGATACAAGACTCGNCCAATCAATGGTTCGGAAGCATTAGGCCCATTA 60
consensus_7300#0 ---------------------------------------------------GCAACGTGC 9
consensus_7300#1 ---------------------------------------------------GCAACGTGC 9
consensus_7300#2 GGNATTCGATTTGGCTAGCTGGATGGCTAGGAGGAGCTCGCCGGTGATGAAATGATGGCC 120
* * *
consensus_7300#0 ACATCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTG-TGGCCCATCGTGCG 68
consensus_7300#1 ACGTCGCTGGTGACGCAGCGCGTGGCGGCGCCGGTGCGCGCGGTG-TGGCCCATCGTGCG 68
consensus_7300#2 GGGCGGTGAAATACGGAGGAGAGGGCGGTGCTGGAGCTGGCGGTGATGGCGCACCACATG 180
* *** ** ***** ** ** ** ****** **** ** * *
consensus_7300#0 CAGCT--TCGGCAAC-CCGCAGCGGTACAAGCACTTCGTCCGCA-CCTGCGCC--CTCG- 121
consensus_7300#1 CAGCT--TCGGCAAC-CCGCAGCGGTACAAGCACTTCGTCCGCA-CCTGCGCC--CTCG- 121
consensus_7300#2 TTCCCGCCCGGCACCACCACGGTGATGGAGCATCTTCGTCCGCAGTCCGCACCTGCTCGA 240
* ***** * ** * * * * * *********** * ** ** ****
consensus_7300#0 -CCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTC 180
consensus_7300#1 -CCGCCGGCGACGGCGCCAGCGTCGGCAGCGTCCGCGAGGTCACCGTCGTGTCCGGCCTC 180
consensus_7300#2 TCCCGCGGCGACGGCGCCAGCGTCGGCAGTGTCCGCGAGGTCACCATCGTGTC-AGCCTC 299
** ************************ *************** ******* *****
consensus_7300#0 CCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGC 240
consensus_7300#1 CCGGCTTCCACCAGCACCGAGCGCCTCGAGATGCTCGACGACGACCGCCACATCATCAGC 240
consensus_7300#2 CCGGCATCCACCAGCACCGAGCGCCTCGAGATGCTTGACGACTACCGCCACATCATTATC 359
***** ***************************** ****** ************* * *
consensus_7300#0 TCCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACC 300
consensus_7300#1 TTCCGCGTCGTCGGCGGCCAGCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACC 300
consensus_7300#2 TTCTGCATCGGCGGCGGCCATCATCGCCTCCGCAACTACCGCTCCGTCACC--------- 410
* * ** *** ********* ** ***************************
consensus_7300#0 GAGTTCCAGCCGCCCGCCGCCGGCCCCGGCCCCGCCCCGCCGTACTGCGTCGTCGTCGAG 360
consensus_7300#1 GAGTTCCAGCCGCCCGGCGGCGGTCCCGCCCCCGCCCCGCCTGACTGCGTCGACGGCGGG 360
consensus_7300#2 GAGTTCCAGTCGCCCGGCG------------CTGCCCCGGCGTACTGCGTCGTGGAAGAG 458
********* ****** ** * ****** * ********* * * *
consensus_7300#0 TCCTACGTCGTCGACGTCCCCGACGGGAACACGGCGGAGGACACCAGGATGTTCACC-GA 419
consensus_7300#1 TCCTACGTCGTGGACGTCCCCGACGGGAACCCGGGGGAGGACACCAGGATGTCTACCCGA 420
consensus_7300#2 AGAAAGGAGGGAGAAA-----GAGGGAAGATAGAT------------------------- 488
* * * ** ** ** * *
consensus_7300#0 CACCGTCGTCAAGCTCAAC-CTCCA-GATGCTCGCCGCCGTCGCCGAGGACTCCTCCTCT 477
consensus_7300#1 CAAGGACATGAAGCTCACCGCTCCGTAATGCTGACGTCTGTGGCCGGGGATTCCTACTGA 480
consensus_7300#2 ------------------------------------------------------------
consensus_7300#0 GCTTCGCGGCGGCGCGACTAGGAGAGGCCTCGTCAATAAATCGTCGTCGTCGTCCATGGC 537
consensus_7300#1 TGTATAGGGGGTCTCGCTTATGTGAGGCCTCCGCA-TACTTGGAGGCAGGCAGAGGGCGG 539
consensus_7300#2 ------------------------------------------------------------
consensus_7300#0 GGCGGCGGTGTCGTGTTATTTGTCACTTCTTCTTCTTTTTCTTTTTACTTTTTTTTTTAG 597
consensus_7300#1 GCCGAGTGCGT-GCGTGTTTGAGTGCGTTACAGTTTATCGTTTCTTAGCCTTATCATTAC 598
consensus_7300#2 ------------------------------------------------------------
consensus_7300#0 TTTTGCTTTTCCCATGTTTTTTTTTCTTTTGCTTTCCTTTTGGTTTTCTTGTAAAAACAA 657
consensus_7300#1 TCGGAGTCCGCGCTCGTGGCTGTACAAGCTGCGGT------GGGGTACTTGTAACAT--- 649
consensus_7300#2 ------------------------------------------------------------
consensus_7300#0 CTGTTGTGGCATAAGGAAGCCTGTTTTG 685
consensus_7300#1 ----------------------------
consensus_7300#2 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||