cluster # 7301

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Oryza sativa
cluster # 7301 cluster # 7301 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7301#0 length = 660 sequences # 3

consensus_7301#1 length = 557 sequences # 1

consensusID : consensus_7301#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 660
fasta sequence

                              [TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTGATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGAGTATCTGGAAGCGCAAGGAGGGTGAACATGTGCATTTGTTGTGTGCGGTGGAAGATCTCATGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGCAGTCAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAATCTACACATTCTGTCATCTCTGATACAAATACAAACCAAAATATGTATCAAGGGACCATGACATATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGACAAGTCTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATTTCCAATTCGCGCTCCAATGGACTTGATTTTACCGTAAAGATTAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCAGAATG]

[+] EMBL CF304206             [TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTGATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGAGTATCTGGAAGCGCAAGGAGGGTGAACATGTGCATTTGTTGTGTGCGGTGGAAGATCTCATGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGCAGTCAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAATCTACACATTCTGTCATCTCTGATACAAATACAAACCAAAATATGTATCAAGGGACCATGACATATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGACAAGTCTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATTT CAATTC CGCTCCAATGGACTTGA TTTACCG AAAGA TAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCAGAATG]
[+] EMBL CF303519             [TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTGATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGAGTATCTGGAAGCGCAATGTGGGTGAACATGTGCATTTGTTGTGTGCGGTGGAAGATCTCATGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGCAGTCAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAATCTACACAAGCTGTCATCTCTGATACAAATACAAACCAAAATATGTATCAAGGGACCATGACATATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGACAAGTCTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATTTCCAATTCGCGCTCCAATGGACTTGATTTTACCGTAAAGATTAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTT                                                                      ]
[+] EMBL CF304392             [TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTGATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGAGTATCTGGAAGCGCAAGGAGGGTGAACATGTGCATTTGTTGTGTGCGGTGGAAGATCTCATGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGCAGTCAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAATCTACACATTCTGTCATCTCTGATACAAATACAAACCAAAATATGTATCAAGGGACCATGACATATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGACAAGTCTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATTTCCAATTCGCGCTCCAATGGACTTGATTTTACCGTAAAGATTAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTAC                                                                        ]




>consensus_7301#0
TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTG
ATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGA
GTATCTGGAAGCGCAAGGAGGGTGAACATGTGCATTTGTTGTGTGCGGTGGAAGATCTCA
TGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGCAGT
CAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAATCTA
CACATTCTGTCATCTCTGATACAAATACAAACCAAAATATGTATCAAGGGACCATGACAT
ATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGACAAGT
CTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATTTCCA
ATTCGCGCTCCAATGGACTTGATTTTACCGTAAAGATTAATTTGATGGGCCAGCTTCATC
TTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCACAGTAG
CCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCAGAATG

consensusID : consensus_7301#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [TGATCAAGTTTCTAGAAAAATTTAGCAATATCTAAAATATCAAATTAGTTTCATTAAATCTAACATTGAATATATTTTGATAATATGTTTGTTTTGTTTTGAAAATATTACTGTATTATATTGTTCTATAAACTTGGTCAAACTTAAATAAGTTTGACTAGGAAAAAAGTCAAACGGCTTATAATATTAAATAGAGGGAGTACATGTTTAGTCATCAATCAATATCCCCTATTCCTGGCGCTTATGTACTTCCCTTATGTGGTTTGCTCATTTGTGCTATGCTCTGCAGATTAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCAGAATGGGACTATTGAAATTGTTGATGTTTTAGCTAATGCAATATCTGTTAGCNNTGCTGTCCATAGCAGCACTGTCAGNNNANNAAGNTNGCTTNNNNNNNNNNGGCTTNNNNNNNNCTCATATAGTC]

[+] EMBL CF196900             [TGATCAAGTTTCTAGAAAAATTTAGCAATATCTAAAATATCAAATTAGTTTCATTAAATCTAACATTGAATATATTTTGATAATATGTTTGTTTTGTTTTGAAAATATTACTGTATTATATTGTTCTATAAACTTGGTCAAACTTAAATAAGTTTGACTAGGAAAAAAGTCAAACGGCTTATAATATTAAATAGAGGGAGTACATGTTTAGTCATCAATCAATATCCCCTATTCCTGGCGCTTATGTACTTCCCTTATGTGGTTTGCTCATTTGTGCTATGCTCTGCAGATTAATTTGATGGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCAGAATGGGACTATTGAAATTGTTGATGTTTTAGCTAATGCAATATCTGTTAGCNNTGCTGTCCATAGCAGCACTGTCAGNNNANNAAGNTNGCTTNNNNNNNNNNGGCTTNNNNNNNNCTCATATAGTC]




>consensus_7301#1
TGATCAAGTTTCTAGAAAAATTTAGCAATATCTAAAATATCAAATTAGTTTCATTAAATC
TAACATTGAATATATTTTGATAATATGTTTGTTTTGTTTTGAAAATATTACTGTATTATA
TTGTTCTATAAACTTGGTCAAACTTAAATAAGTTTGACTAGGAAAAAAGTCAAACGGCTT
ATAATATTAAATAGAGGGAGTACATGTTTAGTCATCAATCAATATCCCCTATTCCTGGCG
CTTATGTACTTCCCTTATGTGGTTTGCTCATTTGTGCTATGCTCTGCAGATTAATTTGAT
GGGCCAGCTTCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTT
ACTTGCCACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGT
AGGAACTCAGAATGGGACTATTGAAATTGTTGATGTTTTAGCTAATGCAATATCTGTTAG
CNNTGCTGTCCATAGCAGCACTGTCAGNNNANNAAGNTNGCTTNNNNNNNNNNGGCTTNN
NNNNNNCTCATATAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7301#0      TCAATTACAGTACTGCGCTCTCTGTCACTCCATTGCCCAGGGGATTTGGCAAATTCTCTG 60
consensus_7301#1      ------------------------TGATCAAGTTTCTAGAAAAATTTAGCAATATCTAAA 36
                                              * *     ** *       **** ****  ***   

consensus_7301#0      ATGTCATGTCTGATCCTGATTTCGACCTGCTCTACTGCACGCACATTGATGGCAAGCTGA 120
consensus_7301#1      ATATCAAATTAGTTTC---ATTAAATCTAA--CATTGAATATATTTTGATAATATGTT-- 89
                      ** ***  *  * * *    **  * **     * ** *   *  *****   * * *  

consensus_7301#0      GTATCTGGAAGCGCAAGGAGGGTGAACATGTGCATTTGTTGTGTGCGGTGG---AAGATC 177
consensus_7301#1      -TGTTTTGTTTTGAAAATA---TTACTGTATTATATTGTTCTATAAACTTGGTCAAACTT 145
                       * * * *    * **  *   * *   * *    ***** * *    * *   **  * 

consensus_7301#0      TCATGCCTTCAATTGGTACAATTGTTCCACCTCCAGCTGTTCTTGCTACTACAATCTGGC 237
consensus_7301#1      AAATAAGTTTGACTAGGAAAA-------AAGTCAAACGGCTTATAATATTAAA------T 192
                        **   **  * * * * **       *  ** * * * *  *  ** ** *       

consensus_7301#0      AGTCAGAGGCTGTTTTCCGTAACATAGAGAAGCAATCACGGGACTTGGGACAAATACAAT 297
consensus_7301#1      AGAGGGAGTACATGTTTAGT--CATCAATCAATATCCCCTATTCCTGGCGCTTATGTACT 250
                      **   ***    * **  **  ***  *  *  *  * *    * ***  *  **  * *

consensus_7301#0      CTACACATTCTGTCATCTCTGATACAA-ATACAAACCAAAATATGTATCAAGGGACCATG 356
consensus_7301#1      TCCCTTATGTGGTTTGCTCATTTGTGCTATGCTCTGCAGATTA-ATTTGATGGGCCAGCT 309
                         *  **   **   ***   *     ** *    ** * **  * * * *** *    

consensus_7301#0      ACATATCTAACCTCGATCTCTGAAGATGGCAAGATCTGGTCATGGCATTTAAGTTTTGAC 416
consensus_7301#1      TCATCTTTTGTCCTCCACTGTGACTACG-CTAGCTGTG-CCATCCCCTTCTTTACTTGCC 367
                       *** * *   *     ** ***  * * * ** * **  ***  * **      *** *

consensus_7301#0      AAGTCTGCATGTGCTAGAAAAGATAAACTAGGTACATCGAATCATAGTGATGCTGGAATT 476
consensus_7301#1      ACAGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACT 427
                      *     **  *** * ****  **          **      * *  ** **  **** *

consensus_7301#0      TCCAATTCGCGCTCCAATGGACTTGATTTTACCGTAAAGATTA-ATTTGATGGGCCAGCT 535
consensus_7301#1      CAGAATGGGACTATTGAAATTGTTGATGTTTTAGCTAATGCAATATCTGTTAGCNNTGCT 487
                         ***  *       *     ***** **   *  **    * ** ** * *    ***

consensus_7301#0      TCATCTTTTGTCCTCCACTGTGACTACGCTAGCTGTGCCATCCCCTTCTTTACTTGCCAC 595
consensus_7301#1      --GTCCATAG--CAGCACTGTCAGNNNANNAAGNTNGCTTNNNNNNNNNNGGCTTNNNNN 543
                         **  * *  *  ****** *       *     **              ***     

consensus_7301#0      AGTAGCCCGTGGTGGAAACAATCCTGCTCCAGCAGTACCACTTGTTGCTGTAGGAACTCA 655
consensus_7301#1      NNNCTCATATAGTC---------------------------------------------- 557
                           *   * **                                               

consensus_7301#0      GAATG 660
consensus_7301#1      -----