cluster # 7308

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Oryza sativa
cluster # 7308 cluster # 7308 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7308#0 length = 603 sequences # 2

consensus_7308#1 length = 386 sequences # 2

consensusID : consensus_7308#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 603
fasta sequence

                              [TTTTTTTAAGGCAGAAGAATTATATTAAAATAACCAAACTAACAACATACCACTTAAAATCTCGAAGGTCTGAGAAAAGGCATCCGCCCATGTTCATTATGAATGATGTAACCTGATAGACATGAACATTAGGTCAAATGCCAGGATGATTCCACAGCAAGAACTACTGAGATTGGCATCTCTGTTCTAATAGAATTGAAATACTTTTGCACTGCAAGAGCTTCACAAAACAGGGAATAACAAAGCTCAGCGCCCCCGGCCCCGACCACGGCCACGACCGCGTCCGCGCCCACGCCCCAAAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGTTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAGGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGTGTTCATGCTTATATCCACACCGGTAATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTCGATGGTGACCGTCTCGTTGTTCAGCTTCATCAGAAACCTGACGAGCTTCCCCCTTGTCTCGTC]

[-] EMBL AU172394             [TTTTTTTAAGGCAGAAGAATTATATTAAAATAACCAAACTAACAACATACCACTTAAAATCTCGAAGGTCTGAGAAAAGGCATCCGCCCATGTTCATTATGAATGATGTAACCTGATAGACATGAACATTAGGTCAAATGCCAGGATGATTCCACAGCAAGAACTACTGAGATTGGCATCTCTGTTCTAATAGAATTGAAATACTTTTGCACTGCAAGAGCTTCACAAAACAGGGAATAACAAAGCTCAGCGCCCCCGGCCCCGACCACGGCCACGACCGCGTCCGCGCCCACGCCCCAAAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGTTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAGGTGGTCAAGG                                                                                                                                                                             ]
[+] EMBL CA763570             [          tttttttttTTTTTTTAAAATAACCAAACTAAGAACATACCACTTAAAATCTCGAAGGTCTGAGAAAAGGCAT CGCCCATGTTCA TATGAATGATGTAACCTGATAGACATGAACATTAGGTCAAATGCCAGGATGATTCCACAGCAAGAACTACTGAGATTGGCATCTCTGTTCTAATAGAATTGAAATACTTTTGCACTGCAAGAGCTTCACAAAACAGGGAATAACAAAGCTCAGCGCCCCCGGCCCCGACCACGGCCACGACCGCGTCCGCGCCCACGCCCCAAAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGTTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAGGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGTGTTCATGCTTATATCCACACCGGTAATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTCGATGGTGACCGTCTCGTTGTTCAGCTTCATCAGAAACCTGACGAGCTTCCCCCTTGTCTCGTC]




>consensus_7308#0
TTTTTTTAAGGCAGAAGAATTATATTAAAATAACCAAACTAACAACATACCACTTAAAAT
CTCGAAGGTCTGAGAAAAGGCATCCGCCCATGTTCATTATGAATGATGTAACCTGATAGA
CATGAACATTAGGTCAAATGCCAGGATGATTCCACAGCAAGAACTACTGAGATTGGCATC
TCTGTTCTAATAGAATTGAAATACTTTTGCACTGCAAGAGCTTCACAAAACAGGGAATAA
CAAAGCTCAGCGCCCCCGGCCCCGACCACGGCCACGACCGCGTCCGCGCCCACGCCCCAA
AGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGT
TTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAG
GTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGT
GTTCATGCTTATATCCACACCGGTAATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTC
GATGGTGACCGTCTCGTTGTTCAGCTTCATCAGAAACCTGACGAGCTTCCCCCTTGTCTC
GTC

consensusID : consensus_7308#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 386
fasta sequence

                              [AAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGTTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTNAGGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGTGTTCATGCTTATATCCACACCGGTGATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTCGATGGTGACCGTCTCGTTGTTCAGCTTCAT-CAGAAACCTGACGAGCTTCATCTTGGCGGCGGGAGGGAGGAGCGGAGGCGGAGGCGGCGACGAGCCACGGGTGGGAATCGGCGGAGCTCGAGCGAGCTGCGCTTTCTCGGAGCGG]

[-] EMBL AU069639             [AAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGTTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTNAGGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGTGTTCATGCTTATATCCACACCGGTGATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTCGATGGTGACCGTCTCGTTGTTCAGCTTCAT CAGAAACCTGACGAGCTTCATCTTGGCGGCGGGAGGGAGGAGCGGAGGCGGAGGCGGCGACGAGCCACGGGTGGGAATCGGCGGAGC                            ]
[-] EMBL OS0048A              [                                                                          CTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAGGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGTGTTCATGCTTATATCCACACCGGTGATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTCGATGGTGACCGTCTCGTTGTTCAGCTTCATGCAGAAACCTGACGAGCTTCATCTTGGCGGCGGGAGGGAGGAGCGGAGGCGGAGGCGGCGACGAGCCACGGGTGGGAATCGGCGGAGCTCGAGCGAGCTGCGCTTTCTCGGAGCGG]




>consensus_7308#1
AAGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAG
TTTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTNA
GGTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGG
TGTTCATGCTTATATCCACACCGGTGATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCT
CGATGGTGACCGTCTCGTTGTTCAGCTTCATCAGAAACCTGACGAGCTTCATCTTGGCGG
CGGGAGGGAGGAGCGGAGGCGGAGGCGGCGACGAGCCACGGGTGGGAATCGGCGGAGCTC
GAGCGAGCTGCGCTTTCTCGGAGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7308#0      TTTTTTTAAGGCAGAAGAATTATATTAAAATAACCAAACTAACAACATACCACTTAAAAT 60
consensus_7308#1      ------------------------------------------------------------
                                                                                  

consensus_7308#0      CTCGAAGGTCTGAGAAAAGGCATCCGCCCATGTTCATTATGAATGATGTAACCTGATAGA 120
consensus_7308#1      ------------------------------------------------------------
                                                                                  

consensus_7308#0      CATGAACATTAGGTCAAATGCCAGGATGATTCCACAGCAAGAACTACTGAGATTGGCATC 180
consensus_7308#1      ------------------------------------------------------------
                                                                                  

consensus_7308#0      TCTGTTCTAATAGAATTGAAATACTTTTGCACTGCAAGAGCTTCACAAAACAGGGAATAA 240
consensus_7308#1      ------------------------------------------------------------
                                                                                  

consensus_7308#0      CAAAGCTCAGCGCCCCCGGCCCCGACCACGGCCACGACCGCGTCCGCGCCCACGCCCCAA 300
consensus_7308#1      -----------------------------------------------------------A 1
                                                                                 *

consensus_7308#0      AGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGT 360
consensus_7308#1      AGGTTTCCCTGCAGTTGGCTTCTTAGCCTTGACTCTCGGGGTATCCTCTACTAGTAAAGT 61
                      ************************************************************

consensus_7308#0      TTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTGAG 420
consensus_7308#1      TTCCAGATTTAAGCTATCAGGGAGGATGTAATAGCGAATGTTGTTTCCTCTCACACTNAG 121
                      ********************************************************* **

consensus_7308#0      GTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGT 480
consensus_7308#1      GTGGTCAAGGGTTACAGGATTTTTCCCTTTCAATGTGAGCTTAACAGTCTTCAAGTGGGT 181
                      ************************************************************

consensus_7308#0      GTTCATGCTTATATCCACACCGGTAATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTC 540
consensus_7308#1      GTTCATGCTTATATCCACACCGGTGATGGTTCCGTGGACGACGGTGCCGTTCTTGAGCTC 241
                      ************************ ***********************************

consensus_7308#0      GATGGTGACCGTCTCGTTGTTCAGCTTCATCAGAAACCTGACGAGCTTCCCCCTTGTCTC 600
consensus_7308#1      GATGGTGACCGTCTCGTTGTTCAGCTTCATCAGAAACCTGACGAGCTTCATCTTGGCGGC 301
                      *************************************************  * * *   *

consensus_7308#0      GTC--------------------------------------------------------- 603
consensus_7308#1      GGGAGGGAGGAGCGGAGGCGGAGGCGGCGACGAGCCACGGGTGGGAATCGGCGGAGCTCG 361
                      *                                                           

consensus_7308#0      -------------------------
consensus_7308#1      AGCGAGCTGCGCTTTCTCGGAGCGG 386