cluster # 7311

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Oryza sativa
cluster # 7311 cluster # 7311 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7311#0 length = 546 sequences # 3

consensus_7311#1 length = 333 sequences # 1

consensusID : consensus_7311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 546
fasta sequence

                              [CGCTGGCCGGCGAGGGCCAGAACCTCGTCGTCACCCAGGGCGCGTCCGGCTCCGGCTCCGGCCCCAGAGACGTGCGCATCAACTACATCCCCATCAAGGACCCCGACGTGGTGATCAACTCGCGCATCGCCTTGCACGGCGTCTACGTGACGTTCCCGCGCCTCCACNTCGCCAACCTCGCCGCCGCGGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTC-GGCGACTGCGCCTCCGCCGC-GGCGACCTCTACCACTGTTCCGGCTGCTCACCGCTACGGCGAAGGGCAGTGATCGCGTGAGTGCGTCTCTTTCGTCCTCTGCTTCTAACTAGCTAGGATTTAGCACCTGCCGGTTTTGTCTGTCTCTGATTAGGATGAGTAATGTGCTGTGATGACATATCGTGCTACTGCCTGTACGGTTCTCGGTTCATGCCATGGATCAGCAACTGCTTGAAATGAATGAGATCTTGAAAGAATTTTCAGCGGCCATGCTGATTTCGTTTGAGCAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU100905             [CGCTGGCCGGCGAGGGCCAGAACCTCGTCGTCACCCAGGGCGCGTCCGGCTCCGGCTCCGGCCCCAGAGACGTGCGCATCAACTACATCCCCATCAAGGACCCCGACGTGGTGATCAACTCGCGCATCGCCTTGCACGGCGTCTACGTGACGTTCCCGCGCCTCCACNTCGCCAACCTCGCCGCCGCGGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAA CTGCGGCGTCTTC GGCGACTGCGCCTCCGCCGC GGCGACCTCTACCACTGTTCCGGCTGCTCACCGCTACGGCGAAGGGCAGTGATCGCGTGAGTGCGTCTCTTTCGTCCTCTGCTTCTAACTAGCTAGGATTTAGCACCTGCCGGTTTTGTCTGTCTCTGATTAGGATGAGTAATGTGCTGTGATGACATATCGTGCTACTGCCTGTACGGTTCTCGGTTCATGCCATGGATCAGCAACTGCTTGAAATGAATGAGATCTTGAAAGAATTTTCAGCGGCCATGCTGATTTCGTTTGAGCAAAAAA                 ]
[+] EMBL AU100904             [                 CAGAACCTCGTCGTCACCCAGGGCGCGTCCGGCTCCGGCTCCGGCCCCAGAGACGTGCGCATCAACTACATCCCCATCAAGGACCCCGACGTGGTGATCAACTCGCGCATCGCCTTGCACGGCGTCTACGTGACGTTCCCGCGCCTCCACNTCGCCAACCTCGCCGCCGCGGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTC GGCGACNNCGCCTCCGCCGC GGCGACNTCTACCACTGTTCCGGCTGCTCACAGCTACGGCGAAGGGGAGT                                                                                                                                                                                                                                                ]
[+] EMBL AU161287             [                                                                                                                                                      CGTTCCCGGGCTTCCACTTCGCCAACCTNGCCGCCGCGGTCGCCCTNGCTTCCTCCAACCAGATCAACGCAACCTGCGGCGTNTTCGGGCGANTGCG CTCCGCCGCGGGCGACCTCTACCACTGTTCCGGCTGCTCACCGCTACGGCGAAGGGCAGTGATCGCGTNAGTGCGTCTCTTTCGTCCTCTGCTTCTAACTAGCTAGGATTTAGCACCTGCCGGTTTTGTCTGTCTCTGATTAGGATGAGTAATGTGCTGTGATGACATATCGTGCTACTGCCTGTACGGTTCTCGGTTCATGCCATGGATCAGCAACTGCTTGAAATGAATGAGATCTTGAAAGAATTTTCAGCGGCCATGCTGATTTCGTTTGAGCAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7311#0
CGCTGGCCGGCGAGGGCCAGAACCTCGTCGTCACCCAGGGCGCGTCCGGCTCCGGCTCCG
GCCCCAGAGACGTGCGCATCAACTACATCCCCATCAAGGACCCCGACGTGGTGATCAACT
CGCGCATCGCCTTGCACGGCGTCTACGTGACGTTCCCGCGCCTCCACNTCGCCAACCTCG
CCGCCGCGGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTCGGCG
ACTGCGCCTCCGCCGCGGCGACCTCTACCACTGTTCCGGCTGCTCACCGCTACGGCGAAG
GGCAGTGATCGCGTGAGTGCGTCTCTTTCGTCCTCTGCTTCTAACTAGCTAGGATTTAGC
ACCTGCCGGTTTTGTCTGTCTCTGATTAGGATGAGTAATGTGCTGTGATGACATATCGTG
CTACTGCCTGTACGGTTCTCGGTTCATGCCATGGATCAGCAACTGCTTGAAATGAATGAG
ATCTTGAAAGAATTTTCAGCGGCCATGCTGATTTCGTTTGAGCAAAAAAAAAAAAAAAAA
AAAAAA

consensusID : consensus_7311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [ACGTGACGTTCCCGCGCCTCCACCTCGCCAACCTCGCCGCCGCGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTCGGCGACTNCGCCTNCGCCGCGGNAGCCTCTACCACTGTTNCGGCTGCTCACCGNTACGGCGAAGGGCAGTGATCGCGTTGATGTGATGGAAAAGGACTGAAGTTTGGATCCAAACTTTGGATCTAAACACAGCCTTTGGATCGTGCTGATTAAATTGGATGCAGTAGTAAATGTCATTTTGTCTTTCATCTGTTTAAGAAGTTGTAATATGCTTCAGGCTTGAGCTATACCATGCTCCGTAA]

[+] EMBL C28993               [ACGTGACGTTCCCGCGCCTCCACCTCGCCAACCTCGCCGCCGCGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTCGGCGACTNCGCCTNCGCCGCGGNAGCCTCTACCACTGTTNCGGCTGCTCACCGNTACGGCGAAGGGCAGTGATCGCGTTGATGTGATGGAAAAGGACTGAAGTTTGGATCCAAACTTTGGATCTAAACACAGCCTTTGGATCGTGCTGATTAAATTGGATGCAGTAGTAAATGTCATTTTGTCTTTCATCTGTTTAAGAAGTTGTAATATGCTTCAGGCTTGAGCTATACCATGCTCCGTAA]




>consensus_7311#1
ACGTGACGTTCCCGCGCCTCCACCTCGCCAACCTCGCCGCCGCGTCGCCCTCGCCTCCTC
CAACCAGATCAACGCAACCTGCGGCGTCTTCGGCGACTNCGCCTNCGCCGCGGNAGCCTC
TACCACTGTTNCGGCTGCTCACCGNTACGGCGAAGGGCAGTGATCGCGTTGATGTGATGG
AAAAGGACTGAAGTTTGGATCCAAACTTTGGATCTAAACACAGCCTTTGGATCGTGCTGA
TTAAATTGGATGCAGTAGTAAATGTCATTTTGTCTTTCATCTGTTTAAGAAGTTGTAATA
TGCTTCAGGCTTGAGCTATACCATGCTCCGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7311#0      CGCTGGCCGGCGAGGGCCAGAACCTCGTCGTCACCCAGGGCGCGTCCGGCTCCGGCTCCG 60
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      GCCCCAGAGACGTGCGCATCAACTACATCCCCATCAAGGACCCCGACGTGGTGATCAACT 120
consensus_7311#1      ------------------------------------------------------------
                                                                                  

consensus_7311#0      CGCGCATCGCCTTGCACGGCGTCTACGTGACGTTCCCGCGCCTCCACNTCGCCAACCTCG 180
consensus_7311#1      ------------------------ACGTGACGTTCCCGCGCCTCCACCTCGCCAACCTCG 36
                                              *********************** ************

consensus_7311#0      CCGCCGCGGTCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTCGGCG 240
consensus_7311#1      CCGCCGCG-TCGCCCTCGCCTCCTCCAACCAGATCAACGCAACCTGCGGCGTCTTCGGCG 95
                      ******** ***************************************************

consensus_7311#0      ACTGCGCCTCCGCCGCGGCGACCTCTACCACTGTTCCGGCTGCTCACCGCTACGGCGAAG 300
consensus_7311#1      ACTNCGCCTNCGCCGCGGNAGCCTCTACCACTGTTNCGGCTGCTCACCGNTACGGCGAAG 155
                      *** ***** ********   ************** ************* **********

consensus_7311#0      GGCAGTGATCGCGTGAGTGCGTCTCTTTCGTCCTCTGCTTCTAACT---AGCTAGGATTT 357
consensus_7311#1      GGCAGTGATCGCGTTGATGTGATGGAAAAGGACTGAAGTTTGGATCCAAACTTTGGATCT 215
                      **************   ** *        *  **    **   *     *  * **** *

consensus_7311#0      AGCACCTGCCGGTTTTGTCTGTCTCTGATTAGGATGAGTAATGTGCTGTGATGACATATC 417
consensus_7311#1      AAACACAGCC---TTTGGATCGTGCTGATTAAATTGGA-----TGCAGTAGTAA-ATGTC 266
                      *    * ***   ****  *    *******   **       *** **  * * ** **

consensus_7311#0      GTGCTACTGCCTGTACGGTTCTCGGTTCATGCCATGGATCAGCAACTGCTTGAAATGAAT 477
consensus_7311#1      ATTTTGTCTTTCATCTGTTTAAGAAGTTGTAATATGCTTCAG-----GCTTGAGCTATAC 321
                       *  *        *  * **      *  *   ***  ****     ******  *  * 

consensus_7311#0      GAGATCTTGAAAGAATTTTCAGCGGCCATGCTGATTTCGTTTGAGCAAAAAAAAAAAAAA 537
consensus_7311#1      CATGCTCCGTAA------------------------------------------------ 333
                       *      * **                                                

consensus_7311#0      AAAAAAAAA 546
consensus_7311#1      ---------