cluster # 7313

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Oryza sativa
cluster # 7313 cluster # 7313 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7313#0 length = 482 sequences # 1

consensus_7313#1 length = 348 sequences # 2
consensus_7313#2 length = 311 sequences # 1

consensusID : consensus_7313#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [GAGGATGCGGCNTGAGAANTTCCTCAGCCACAGCCAAGGCCAGCTGTGTANCCGATTCGTCGTCGNCGTCCCTCTGCTGCTGCANCACNGCACCGCANGAACACCTCTCNTCGGAACNCGTTTTGACGCACTCACCTGCCCGCGTTCGCCNCCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGATCTGGAACTCGCGTTCCGATGGTGTTGAAAATTCCNCCGGACTCACAGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCACCTNCCACAAAAATCCGGCCGTTNCGTCAATCCGCGGTTTCTCAAAAACGTGGTNNAGGTCTCNTCGGTCCGAGAGCAAAACTGAAANTCTTCCTANTGGGAGCTGTCCNGTTGGANTTGGTTCCGCTCNTCGCCANCAAGGTTTGCCTGTGGAGTGNATTCCCCCCCCCNCAGNGAANTCANTTNCCCAANTC]

[+] EMBL BE228408             [GAGGATGCGGCNTGAGAANTTCCTCAGCCACAGCCAAGGCCAGCTGTGTANCCGATTCGTCGTCGNCGTCCCTCTGCTGCTGCANCACNGCACCGCANGAACACCTCTCNTCGGAACNCGTTTTGACGCACTCACCTGCCCGCGTTCGCCNCCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGATCTGGAACTCGCGTTCCGATGGTGTTGAAAATTCCNCCGGACTCACAGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCACCTNCCACAAAAATCCGGCCGTTNCGTCAATCCGCGGTTTCTCAAAAACGTGGTNNAGGTCTCNTCGGTCCGAGAGCAAAACTGAAANTCTTCCTANTGGGAGCTGTCCNGTTGGANTTGGTTCCGCTCNTCGCCANCAAGGTTTGCCTGTGGAGTGNATTCCCCCCCCCNCAGNGAANTCANTTNCCCAANTC]




>consensus_7313#0
GAGGATGCGGCNTGAGAANTTCCTCAGCCACAGCCAAGGCCAGCTGTGTANCCGATTCGT
CGTCGNCGTCCCTCTGCTGCTGCANCACNGCACCGCANGAACACCTCTCNTCGGAACNCG
TTTTGACGCACTCACCTGCCCGCGTTCGCCNCCGGAGCTGCCACTTCCATGCCCGGTGTC
ACCATAGCTCCCGATCTGGAACTCGCGTTCCGATGGTGTTGAAAATTCCNCCGGACTCAC
AGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCACCTNCCACAAAA
ATCCGGCCGTTNCGTCAATCCGCGGTTTCTCAAAAACGTGGTNNAGGTCTCNTCGGTCCG
AGAGCAAAACTGAAANTCTTCCTANTGGGAGCTGTCCNGTTGGANTTGGTTCCGCTCNTC
GCCANCAAGGTTTGCCTGTGGAGTGNATTCCCCCCCCCNCAGNGAANTCANTTNCCCAAN
TC

consensusID : consensus_7313#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 348
fasta sequence

                              [GAATGGTCCTCAGCCACAGCCAAGGCCAGCTGTGTAGCCGATTCGTCGTCGTCGTCCCTCTGCTGCTGCACCACAGCACCGCAGGAACACCTCTCATCGGAACACGTTTTGACGCACTCACCTGCCCGCGTTCGCCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGATCTGGAACTCGCGTTCCGGTTAGCTCTGTTGTCTTCCAGCCCAGTGTCCACGTCCTGTGGGGGTGTCAGCCTGTGGAACACGTCATGCTATCATGGTGTTGAAGATTCCACCGGACTCACAGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCA]

[+] EMBL BI305781             [GAATGGTCCTCAGCCACAGCCAAGGCCAGCTGTGTAGCCGATTCGTCGTCGTCGTCCCTCTGCTGCTGCACCACAGCACCGCAGGAACACCTCTCATCGGAACACGTTTTGACGCACTCACCTGCCCGCGTTCGCCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGATCTGGAACTCGCGTTCCGGTTAGCTCTGTTGTCTTCCAGCCCAGTGTCCACGTCCTGTGGGGGTGTCAGCCTGTGGAACACGTCATGCTATCATGGTGTTGAAGATTCCACCGGACTCACAGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCA]
[+] EMBL CB966209             [                     AAGGCCAGCTGTGTAGCCGATTCGTCGTCGTCGTCCCTCTGCTGCTGCACCACAGCACCGCAGGAACACCTCTCATCGGAACACGTTTTGACGCACTCACCTGCCCGCGTTCGCCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGATCTGGAACTCGCGTTCCGGTTAGCTCTGTTGTCTTCCAGCCCAGTGTCCACGTCCTGTGGGGGTGTCAGCCTGTGGAACACGTCATGCTATCATGGTGTTGAAGATTCCACCGGACTCACAGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCA]




>consensus_7313#1
GAATGGTCCTCAGCCACAGCCAAGGCCAGCTGTGTAGCCGATTCGTCGTCGTCGTCCCTC
TGCTGCTGCACCACAGCACCGCAGGAACACCTCTCATCGGAACACGTTTTGACGCACTCA
CCTGCCCGCGTTCGCCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGA
TCTGGAACTCGCGTTCCGGTTAGCTCTGTTGTCTTCCAGCCCAGTGTCCACGTCCTGTGG
GGGTGTCAGCCTGTGGAACACGTCATGCTATCATGGTGTTGAAGATTCCACCGGACTCAC
AGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCA

consensusID : consensus_7313#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [CGGGAACACGTTTTGACGCGCTCACCCGCCCGCGTTCGTCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCAGATCTGGAATTCGCGTTCCGGCCAGCATGAACATCCTCTCAGAGAACCAGCAACAGCTTCGAGTTCGCAGCACCTGGGGACGAAATTACCTCAAGACGTTCTTACTGTTCCGCCACGATAACCGTCATCCAACTTTTCTCTTTTTATCTCTCTGTCTGTGTTCGTGGTTCACAGTGGAAGAAGAACAGTACTAGATTCAATACTGTTCCACCATGGTCCAGCCTGACCA]

[+] EMBL OSR10301A            [CGGGAACACGTTTTGACGCGCTCACCCGCCCGCGTTCGTCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCAGATCTGGAATTCGCGTTCCGGCCAGCATGAACATCCTCTCAGAGAACCAGCAACAGCTTCGAGTTCGCAGCACCTGGGGACGAAATTACCTCAAGACGTTCTTACTGTTCCGCCACGATAACCGTCATCCAACTTTTCTCTTTTTATCTCTCTGTCTGTGTTCGTGGTTCACAGTGGAAGAAGAACAGTACTAGATTCAATACTGTTCCACCATGGTCCAGCCTGACCA]




>consensus_7313#2
CGGGAACACGTTTTGACGCGCTCACCCGCCCGCGTTCGTCACCGGAGCTGCCACTTCCAT
GCCCGGTGTCACCATAGCTCCAGATCTGGAATTCGCGTTCCGGCCAGCATGAACATCCTC
TCAGAGAACCAGCAACAGCTTCGAGTTCGCAGCACCTGGGGACGAAATTACCTCAAGACG
TTCTTACTGTTCCGCCACGATAACCGTCATCCAACTTTTCTCTTTTTATCTCTCTGTCTG
TGTTCGTGGTTCACAGTGGAAGAAGAACAGTACTAGATTCAATACTGTTCCACCATGGTC
CAGCCTGACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7313#0      GAGGATGCGGCNTGAGAANTTCCTCAGCCACAGCCAAGGCCAGCTGTGTANCCGATTCGT 60
consensus_7313#1      --------------GAATGGTCCTCAGCCACAGCCAAGGCCAGCTGTGTAGCCGATTCGT 46
consensus_7313#2      ------------------------------------------------------------
                                                                                  

consensus_7313#0      CGTCGNCGTCCCTCTGCTGCTGCANCACNGCACCGCANGAACACCTCTCNTCGGAACNCG 120
consensus_7313#1      CGTCGTCGTCCCTCTGCTGCTGCACCACAGCACCGCAGGAACACCTCTCATCGGAACACG 106
consensus_7313#2      --------------------------------------------------CGGGAACACG 10
                                                                          ***** **

consensus_7313#0      TTTTGACGCACTCACCTGCCCGCGTTCGCCNCCGGAGCTGCCACTTCCATGCCCGGTGTC 180
consensus_7313#1      TTTTGACGCACTCACCTGCCCGCGTTCGCCACCGGAGCTGCCACTTCCATGCCCGGTGTC 166
consensus_7313#2      TTTTGACGCGCTCACCCGCCCGCGTTCGTCACCGGAGCTGCCACTTCCATGCCCGGTGTC 70
                      ********* ****** *********** * *****************************

consensus_7313#0      ACCATAGCTCCCGATCTGGAACTCGCGTTCCGATGGTGTTGAAAATTCCNCCGGACTCAC 240
consensus_7313#1      ACCATAGCTCCCGATCTGGAACTCGCGTTCCGGTTA-GCTCTGTTGTCTTCCAGCCCAGT 225
consensus_7313#2      ACCATAGCTCCAGATCTGGAATTCGCGTTCCGGCCAGCATGAACATCCTCTCAGAGAACC 130
                      *********** ********* **********       *       *   * *      

consensus_7313#0      AGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCACCTNCCACAAAA 300
consensus_7313#1      GTCCAC-------GTCCTGTGGGGGTG---TCAGCCTGTGGAACACGTCATGCTATCATG 275
consensus_7313#2      AGCAAC--------AGCTTCGAGTTCGCA--GCACCTGGGGACGAAATTACCTCAAGACG 180
                          **          **    *            **  ***            *  *  

consensus_7313#0      ATCCGGCCGTTNCGTCAATCCGCGGTTTCTCAAAAACGTGGTNNAGGTCTCNTCGGTCCG 360
consensus_7313#1      GTGTTGAAGATTCCAC------CGGACTCACAGGAAC-TGAAGTGGACCTAGAAGGCTAC 328
consensus_7313#2      TTCTTACTGTTCCGCCA-----CGA--TAACCGTCATCCAACTTTTCTCTTTTTATCTCT 233
                       *      * * *  *      **   *  *    *            **          

consensus_7313#0      AGAGCAAAACTGAAANTCTTCCTANTGGGAGCTGTCCNGTTGGANTTGGTTCCGCTCNTC 420
consensus_7313#1      ACTGAAGCTTCGGAAGGCCA---------------------------------------- 348
consensus_7313#2      CTGTCTGTGTTCGTGGTTCACAGTGGAAGAAGAACAGTACTAGATTCAATACTGTTCCAC 293
                                                                                  

consensus_7313#0      GCCANCAAGGTTTGCCTGTGGAGTGNATTCCCCCCCCCNCAGNGAANTCANTTNCCCAAN 480
consensus_7313#1      ------------------------------------------------------------
consensus_7313#2      CATGGTCCAGCCTGACCA------------------------------------------ 311
                                                                                  

consensus_7313#0      TC 482
consensus_7313#1      --
consensus_7313#2      --