These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [GAGGATGCGGCNTGAGAANTTCCTCAGCCACAGCCAAGGCCAGCTGTGTANCCGATTCGTCGTCGNCGTCCCTCTGCTGCTGCANCACNGCACCGCANGAACACCTCTCNTCGGAACNCGTTTTGACGCACTCACCTGCCCGCGTTCGCCNCCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGATCTGGAACTCGCGTTCCGATGGTGTTGAAAATTCCNCCGGACTCACAGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCACCTNCCACAAAAATCCGGCCGTTNCGTCAATCCGCGGTTTCTCAAAAACGTGGTNNAGGTCTCNTCGGTCCGAGAGCAAAACTGAAANTCTTCCTANTGGGAGCTGTCCNGTTGGANTTGGTTCCGCTCNTCGCCANCAAGGTTTGCCTGTGGAGTGNATTCCCCCCCCCNCAGNGAANTCANTTNCCCAANTC] [+] EMBL BE228408 [GAGGATGCGGCNTGAGAANTTCCTCAGCCACAGCCAAGGCCAGCTGTGTANCCGATTCGTCGTCGNCGTCCCTCTGCTGCTGCANCACNGCACCGCANGAACACCTCTCNTCGGAACNCGTTTTGACGCACTCACCTGCCCGCGTTCGCCNCCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGATCTGGAACTCGCGTTCCGATGGTGTTGAAAATTCCNCCGGACTCACAGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCACCTNCCACAAAAATCCGGCCGTTNCGTCAATCCGCGGTTTCTCAAAAACGTGGTNNAGGTCTCNTCGGTCCGAGAGCAAAACTGAAANTCTTCCTANTGGGAGCTGTCCNGTTGGANTTGGTTCCGCTCNTCGCCANCAAGGTTTGCCTGTGGAGTGNATTCCCCCCCCCNCAGNGAANTCANTTNCCCAANTC] consensusID : consensus_7313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 348 fasta sequence [GAATGGTCCTCAGCCACAGCCAAGGCCAGCTGTGTAGCCGATTCGTCGTCGTCGTCCCTCTGCTGCTGCACCACAGCACCGCAGGAACACCTCTCATCGGAACACGTTTTGACGCACTCACCTGCCCGCGTTCGCCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGATCTGGAACTCGCGTTCCGGTTAGCTCTGTTGTCTTCCAGCCCAGTGTCCACGTCCTGTGGGGGTGTCAGCCTGTGGAACACGTCATGCTATCATGGTGTTGAAGATTCCACCGGACTCACAGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCA] [+] EMBL BI305781 [GAATGGTCCTCAGCCACAGCCAAGGCCAGCTGTGTAGCCGATTCGTCGTCGTCGTCCCTCTGCTGCTGCACCACAGCACCGCAGGAACACCTCTCATCGGAACACGTTTTGACGCACTCACCTGCCCGCGTTCGCCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGATCTGGAACTCGCGTTCCGGTTAGCTCTGTTGTCTTCCAGCCCAGTGTCCACGTCCTGTGGGGGTGTCAGCCTGTGGAACACGTCATGCTATCATGGTGTTGAAGATTCCACCGGACTCACAGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCA] [+] EMBL CB966209 [ AAGGCCAGCTGTGTAGCCGATTCGTCGTCGTCGTCCCTCTGCTGCTGCACCACAGCACCGCAGGAACACCTCTCATCGGAACACGTTTTGACGCACTCACCTGCCCGCGTTCGCCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCCGATCTGGAACTCGCGTTCCGGTTAGCTCTGTTGTCTTCCAGCCCAGTGTCCACGTCCTGTGGGGGTGTCAGCCTGTGGAACACGTCATGCTATCATGGTGTTGAAGATTCCACCGGACTCACAGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCA] consensusID : consensus_7313#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [CGGGAACACGTTTTGACGCGCTCACCCGCCCGCGTTCGTCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCAGATCTGGAATTCGCGTTCCGGCCAGCATGAACATCCTCTCAGAGAACCAGCAACAGCTTCGAGTTCGCAGCACCTGGGGACGAAATTACCTCAAGACGTTCTTACTGTTCCGCCACGATAACCGTCATCCAACTTTTCTCTTTTTATCTCTCTGTCTGTGTTCGTGGTTCACAGTGGAAGAAGAACAGTACTAGATTCAATACTGTTCCACCATGGTCCAGCCTGACCA] [+] EMBL OSR10301A [CGGGAACACGTTTTGACGCGCTCACCCGCCCGCGTTCGTCACCGGAGCTGCCACTTCCATGCCCGGTGTCACCATAGCTCCAGATCTGGAATTCGCGTTCCGGCCAGCATGAACATCCTCTCAGAGAACCAGCAACAGCTTCGAGTTCGCAGCACCTGGGGACGAAATTACCTCAAGACGTTCTTACTGTTCCGCCACGATAACCGTCATCCAACTTTTCTCTTTTTATCTCTCTGTCTGTGTTCGTGGTTCACAGTGGAAGAAGAACAGTACTAGATTCAATACTGTTCCACCATGGTCCAGCCTGACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7313#0 GAGGATGCGGCNTGAGAANTTCCTCAGCCACAGCCAAGGCCAGCTGTGTANCCGATTCGT 60 consensus_7313#1 --------------GAATGGTCCTCAGCCACAGCCAAGGCCAGCTGTGTAGCCGATTCGT 46 consensus_7313#2 ------------------------------------------------------------ consensus_7313#0 CGTCGNCGTCCCTCTGCTGCTGCANCACNGCACCGCANGAACACCTCTCNTCGGAACNCG 120 consensus_7313#1 CGTCGTCGTCCCTCTGCTGCTGCACCACAGCACCGCAGGAACACCTCTCATCGGAACACG 106 consensus_7313#2 --------------------------------------------------CGGGAACACG 10 ***** ** consensus_7313#0 TTTTGACGCACTCACCTGCCCGCGTTCGCCNCCGGAGCTGCCACTTCCATGCCCGGTGTC 180 consensus_7313#1 TTTTGACGCACTCACCTGCCCGCGTTCGCCACCGGAGCTGCCACTTCCATGCCCGGTGTC 166 consensus_7313#2 TTTTGACGCGCTCACCCGCCCGCGTTCGTCACCGGAGCTGCCACTTCCATGCCCGGTGTC 70 ********* ****** *********** * ***************************** consensus_7313#0 ACCATAGCTCCCGATCTGGAACTCGCGTTCCGATGGTGTTGAAAATTCCNCCGGACTCAC 240 consensus_7313#1 ACCATAGCTCCCGATCTGGAACTCGCGTTCCGGTTA-GCTCTGTTGTCTTCCAGCCCAGT 225 consensus_7313#2 ACCATAGCTCCAGATCTGGAATTCGCGTTCCGGCCAGCATGAACATCCTCTCAGAGAACC 130 *********** ********* ********** * * * * consensus_7313#0 AGGAACTGAAGTGGACCTAGAAGGCTACACTGAAGCTTCGGAAGGCCACCTNCCACAAAA 300 consensus_7313#1 GTCCAC-------GTCCTGTGGGGGTG---TCAGCCTGTGGAACACGTCATGCTATCATG 275 consensus_7313#2 AGCAAC--------AGCTTCGAGTTCGCA--GCACCTGGGGACGAAATTACCTCAAGACG 180 ** ** * ** *** * * consensus_7313#0 ATCCGGCCGTTNCGTCAATCCGCGGTTTCTCAAAAACGTGGTNNAGGTCTCNTCGGTCCG 360 consensus_7313#1 GTGTTGAAGATTCCAC------CGGACTCACAGGAAC-TGAAGTGGACCTAGAAGGCTAC 328 consensus_7313#2 TTCTTACTGTTCCGCCA-----CGA--TAACCGTCATCCAACTTTTCTCTTTTTATCTCT 233 * * * * * ** * * * ** consensus_7313#0 AGAGCAAAACTGAAANTCTTCCTANTGGGAGCTGTCCNGTTGGANTTGGTTCCGCTCNTC 420 consensus_7313#1 ACTGAAGCTTCGGAAGGCCA---------------------------------------- 348 consensus_7313#2 CTGTCTGTGTTCGTGGTTCACAGTGGAAGAAGAACAGTACTAGATTCAATACTGTTCCAC 293 consensus_7313#0 GCCANCAAGGTTTGCCTGTGGAGTGNATTCCCCCCCCCNCAGNGAANTCANTTNCCCAAN 480 consensus_7313#1 ------------------------------------------------------------ consensus_7313#2 CATGGTCCAGCCTGACCA------------------------------------------ 311 consensus_7313#0 TC 482 consensus_7313#1 -- consensus_7313#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||