cluster # 7314

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Oryza sativa
cluster # 7314 cluster # 7314 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7314#0 length = 613 sequences # 1

consensus_7314#1 length = 609 sequences # 2
consensus_7314#2 length = 194 sequences # 1

consensusID : consensus_7314#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [GCTAATTCGCGTCATTCATCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTGTCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGCAGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGGTGATGAGGCAGTACTCGCAGGTGTGCGCGGCGGCGGCGGACGCGGCGTGCCCGGCGTGCGGGTGCGCCAAGAATGGCAGCGTCAGCGTCAACTTTTCGTGAGCGATGGCGGAGGGAAAGGAGTAATAGCAATTAGACTAGATTTTTTTTCTTTTCTTTTCTTTTTTTTCTCTCTCTCCTCCGTTTTTTTTCTTTTCTGTTTTGGTTTAGCTGATGGGGATAATAGGGCGATATGGTCTAATGATGTGGATATGAGGGGATGAGTTTTCCTTTTTTGTGTTGGATCAATTTGATCAACAAGGAAAAAAAACATA]

[+] EMBL AK064871             [GCTAATTCGCGTCATTCATCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTGTCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGCAGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGGTGATGAGGCAGTACTCGCAGGTGTGCGCGGCGGCGGCGGACGCGGCGTGCCCGGCGTGCGGGTGCGCCAAGAATGGCAGCGTCAGCGTCAACTTTTCGTGAGCGATGGCGGAGGGAAAGGAGTAATAGCAATTAGACTAGATTTTTTTTCTTTTCTTTTCTTTTTTTTCTCTCTCTCCTCCGTTTTTTTTCTTTTCTGTTTTGGTTTAGCTGATGGGGATAATAGGGCGATATGGTCTAATGATGTGGATATGAGGGGATGAGTTTTCCTTTTTTGTGTTGGATCAATTTGATCAACAAGGAAAAAAAACATA]




>consensus_7314#0
GCTAATTCGCGTCATTCATCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCA
TCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGC
CTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTG
TCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGC
AGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGG
TGATGAGGCAGTACTCGCAGGTGTGCGCGGCGGCGGCGGACGCGGCGTGCCCGGCGTGCG
GGTGCGCCAAGAATGGCAGCGTCAGCGTCAACTTTTCGTGAGCGATGGCGGAGGGAAAGG
AGTAATAGCAATTAGACTAGATTTTTTTTCTTTTCTTTTCTTTTTTTTCTCTCTCTCCTC
CGTTTTTTTTCTTTTCTGTTTTGGTTTAGCTGATGGGGATAATAGGGCGATATGGTCTAA
TGATGTGGATATGAGGGGATGAGTTTTCCTTTTTTGTGTTGGATCAATTTGATCAACAAG
GAAAAAAAACATA

consensusID : consensus_7314#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 609
fasta sequence

                              [TCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTGTCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGCAGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGGTGATGAGGCAGTACTCGCAGGTGTGCCCGGCGGCGGCGGACGCGGCGGAGAGCGGCGTCACGTTCGGCGGCGGGCAGGAGGCGGCGGCGCCGAGGAAGAGGAAGCGCGCCGAGGTGCCGGTGGTTCTTGGCGCCGCGGGCGACGTGGCCGTGGCGGCGCAGGCTCGCCAGCAGCTGGTCGACGTCGACCGCCTCGTGCTCCACCATGCGGCGAAGATGTGGGCGGAGCTTGCGGAGCACAGGGGGAGGCACGCGAGGCAGATGGTGGCCACCGTGGAAGCCGCGGCGGCGAGGCGGCTGAGGGCCAAGGACGAGGAGATCGAGCGGA]

[+] EMBL CB657618             [TCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTGTCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGCAGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGGTGATGAGGCAGTACTCGCAGGTGTGCCCGGCGGCGGCGGACGCGGCGGAGAGCGGCGTCACGTTCGGCGGCGGGCAGGAGGCGGCGGCGCCGAGGAAGAGGAAGCGCGCCGAGGTGCCGGTGGTTCTTGGCGCCGCGGGCGACGTGGCCGTGGCGGCGCAGGCTCGCCAGCAGCTGGTCGACGTCGACCGCCTCGTGCTCCACCATGCGGCGAAGATGTGGGCGGAGCTTGCGGAGCACAGGGGGAGGCACGCGAGGCAGATGGTGGCCACCGTGGAAGCCGCGGCGGCGAGGCGGCTGAGGGCCAAGGACGAGGAGATCGAGCGGA]
[+] EMBL OSS1589A             [TCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCNGCCGCCGGCNAGGTTNTCGTCGGCGGCGCCNGTGGCGGGNTGATGGCGGGGCTTTG CAGGAGGAGCANCTNGTNCANGGGTACCG                                                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_7314#1
TCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCATCCCGATCGCCATGGCCG
TCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGCCTGCTGAATCCATGTTCT
CGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTGTCGTCGGCGGCGCCGGTG
GCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGCAGGGGTACCGCCAGGTGT
TTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGGTGATGAGGCAGTACTCGC
AGGTGTGCCCGGCGGCGGCGGACGCGGCGGAGAGCGGCGTCACGTTCGGCGGCGGGCAGG
AGGCGGCGGCGCCGAGGAAGAGGAAGCGCGCCGAGGTGCCGGTGGTTCTTGGCGCCGCGG
GCGACGTGGCCGTGGCGGCGCAGGCTCGCCAGCAGCTGGTCGACGTCGACCGCCTCGTGC
TCCACCATGCGGCGAAGATGTGGGCGGAGCTTGCGGAGCACAGGGGGAGGCACGCGAGGC
AGATGGTGGCCACCGTGGAAGCCGCGGCGGCGAGGCGGCTGAGGGCCAAGGACGAGGAGA
TCGAGCGGA

consensusID : consensus_7314#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [CGCANGNGTGNTCATCCCGATCGCCATGGNCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGNCTGCTGAATCCATGTTCTCGCCGAGGCAGNCTTGTTTTGGCGCTGNCGCCGGCGAGGTTGTCGTCGGCGNCGNCGNTGGCGGNNTGATGACGGGGCTTTNCCANGAGGAGCANCTGGTGC]

[+] EMBL OSC100631            [CGCANGNGTGNTCATCCCGATCGCCATGGNCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGNCTGCTGAATCCATGTTCTCGCCGAGGCAGNCTTGTTTTGGCGCTGNCGCCGGCGAGGTTGTCGTCGGCGNCGNCGNTGGCGGNNTGATGACGGGGCTTTNCCANGAGGAGCANCTGGTGC]




>consensus_7314#2
CGCANGNGTGNTCATCCCGATCGCCATGGNCGTCGACGCGCACCACCTGCACCGCCTCCC
ACCACCGATCCAGNCTGCTGAATCCATGTTCTCGCCGAGGCAGNCTTGTTTTGGCGCTGN
CGCCGGCGAGGTTGTCGTCGGCGNCGNCGNTGGCGGNNTGATGACGGGGCTTTNCCANGA
GGAGCANCTGGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7314#1      ------------------TCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCA 42
consensus_7314#2      ----------------------------------------------CGCANGNGTGNTCA 14
consensus_7314#0      GCTAATTCGCGTCATTCATCTCCTCCTCCTTATATTAGGCGCGCACCGCACGCGTGCTCA 60
                                                                    **** * *** ***

consensus_7314#1      TCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGC 102
consensus_7314#2      TCCCGATCGCCATGGNCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGN 74
consensus_7314#0      TCCCGATCGCCATGGCCGTCGACGCGCACCACCTGCACCGCCTCCCACCACCGATCCAGC 120
                      *************** ******************************************* 

consensus_7314#1      CTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTG 162
consensus_7314#2      CTGCTGAATCCATGTTCTCGCCGAGGCAGNCTTGTTTTGGCGCTGNCGCCGGCGAGGTTG 134
consensus_7314#0      CTGCTGAATCCATGTTCTCGCCGAGGCAGCCTTGTTTCGGCGCCGCCGCCGGCGAGGTTG 180
                      ***************************** ******* ***** * **************

consensus_7314#1      TCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGC 222
consensus_7314#2      TCGTCGGCGNCGNCGNTGGCGGNNTGATGACGGGGCTTTNCCANGAGGAGCANCTGGTGC 194
consensus_7314#0      TCGTCGGCGGCGCCGGTGGCGCGGTGATGGCGGGGCTTTGCCAGGAGGAGCAGCTGGTGC 240
                      ********* ** ** *****   ***** ********* *** ******** *******

consensus_7314#1      AGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGG 282
consensus_7314#2      ------------------------------------------------------------
consensus_7314#0      AGGGGTACCGCCAGGTGTTTGTTGGAGGTGGTGGGGTGAGGCAGCCGGCGGCGGCGGAGG 300
                                                                                  

consensus_7314#1      TGATGAGGCAGTACTCGCAGGTGTGCCCGGCGGCGGCGGACGCGGCGGAGAGCGGCGTCA 342
consensus_7314#2      ------------------------------------------------------------
consensus_7314#0      TGATGAGGCAGTACTCGCAGGTGTGCGCGGCGGCGGCGGACGCGGCGT-GCCCGGCGTGC 359
                                                                                  

consensus_7314#1      CGTTCGGCGGCGGGCAGGAGGCGGCGGCGCCGAGGAAGAGGAAGCG-CGCCGAGGTGCCG 401
consensus_7314#2      ------------------------------------------------------------
consensus_7314#0      GGGTGCGCCAAGAATGGCAG-CGTCAGCGTCAACTTTTCGTGAGCGATGGCGGAGGGAAA 418
                                                                                  

consensus_7314#1      GTGGTTCTTGGCGCCGCGGGCGACGTGGCCGTGGCGGCGCAGGCTCGCCAGCAGCTGGTC 461
consensus_7314#2      ------------------------------------------------------------
consensus_7314#0      GGAGTAATAGCAATT--AGACTAGATTTTTTTTCTTTT-----CTTTTCTTTTTTTTCTC 471
                                                                                  

consensus_7314#1      GACGTCGACCGCCTCGTGCTCCACCATGCGGCGAAGATGTGGGCGGAGCTTGCGGAGCAC 521
consensus_7314#2      ------------------------------------------------------------
consensus_7314#0      TCTCTCCTCCGTTTT-TTTTCTTTTCTGTTTTGGTTTAGCTGATGGGGATAATAGGGC-- 528
                                                                                  

consensus_7314#1      AGGGGGAGGCACGCGAGGCAGATGGTGGCCACCGTGGAAGCCGCGGCGGCGAGGCGGCTG 581
consensus_7314#2      ------------------------------------------------------------
consensus_7314#0      -GATATGGTCTAATGATGTGGATATGAG--GGGATGAGTTTTCCTTTTTTGTGTTGGATC 585
                                                                                  

consensus_7314#1      AGGGCCAAGGACGAGGAGATCGAGCGGA 609
consensus_7314#2      ----------------------------
consensus_7314#0      AATTTGATCAACAAGGAAAAAAAACATA 613