cluster # 7315

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Oryza sativa
cluster # 7315 cluster # 7315 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7315#0 length = 867 sequences # 2

consensus_7315#1 length = 827 sequences # 2

consensusID : consensus_7315#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 867
fasta sequence

                              [CAAAGAAACGAAGACGAAAAGACTCATCAGGGTCTTATGTTGAGAATAACAAGGAATTTTCTCCAGGGTCTTCCGCATACATGGGCACGCCGTTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGAGAAGAGTACTAGTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCAACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGAGAAATATAATGCTGGTCAATTTTCTGGGTTGCATGCTTCCAGTAACATCTATTCAACAGAAACAATGCACTTGGCCACAAAAATCCATACAGAAGGTTCAGGTACCAAGACCAAGGGTACCAGACTTGAGCGAGCTATCCGTGACCTCCAAAACATTGTCACTGAATACAAACCACAGATTCTTGATGTACATGAGGCTGATGCAAATTGCCAGGTAGCAGTTAAAAGAAGATTGCCACAAGAAGTAAAACAAAAACTTGCTAAGGTCGCAAGGCTATCGGCAAATCAAGGAAAAATACCAGAACATGAGCTGATCAATCGCCTCATGGGCATAGTTGGCCACCTTGTGCACCGTAGGACACTGAAGAGAAACATGAAAGAAATGGTGCAATCAGGTTTATGTGCTAAACAAGAGAAGGCTGGGAAATTGCAACAAGTGAAAATGGAAATCTATGNNNTGGTCAANNNACGTCTAGCCACCAAACCTAAGGGTGCTGAACATAAGGTTGAATCTATNNNTGGCTTNCANGATCCTGTNANNNANNNTGNNNNNATGGCCTNGNNNNNNAAATCTGT]

[+] EMBL CB673736             [CAAAGAAACGAAGACGAAAAGACTCATCAGGGTCTTATGTTGAGAATAACAAGGAATTTTCTCCAGGGTCTTCCGCATACATGGGCACGCCGTTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGAGAAGAGTACTAGTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCAACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGAGAAATATAATGCTGGTCAATTTTCTGGGTTGCATGCTTCCAGTAACATCTATTCAACAGAAACAATGCACTTGGCCACAAAAATCCATACAGAAGGTTCAGGTACCAAGACCAAGGGTACCAGACTTGAGCGAGCTATCCGTGACCTCCAAAACATTGTCACTGAATACAAACCACAGATTCTTGATGTACATGAGGCTGATGCAAATTGCCAGGTAGCAGTTAAAAGAAGATTGCCACAAGAAGTAAAACAAAAACTTGCTAAGGTCGCAAGGCTA                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF197185             [                                                                                                                                                                                                                                                                                                                                                               AACAATGCACTTGGCCACAAAAATCCATACAGAAGGTTCAGGTACCAAGACCAAGGGTACCAGACTTGAGCGAGCTATCCGTGACCTCCAAAACATTGTCACTGAATACAAACCACAGATTCTTGATGTACATGAGGCTGAGGCAAATTGCCAGGTAGCAGTTAAAAGAAGATTGCCACAAGAAGTAAAACAAAAACTTGCTAAGGTCGCAAGGTTATCGGCAAATCAAGGAAAAATACCAGAACATGAGCTGATCAATCGCCTCATGGGCATAGTTGGCCACCTTGTGCACCGTAGGACACTGAAGAGAAACATGAAAGAAATGGTGCAATCAGGTTTATGTGCTAAACAAGAGAAGGCTGGGAAATTGCAACAAGTGAAAATGGAAATCTATGNNNTGGTCAANNNACGTCTAGCCACCAAACCTAAGGGTGCTGAACATAAGGTTGAATCTATNNNTGGCTTNCANGATCCTGTNANNNANNNTGNNNNNATGGCCTNGNNNNNNAAATCTGT]




>consensus_7315#0
CAAAGAAACGAAGACGAAAAGACTCATCAGGGTCTTATGTTGAGAATAACAAGGAATTTT
CTCCAGGGTCTTCCGCATACATGGGCACGCCGTTTAAGAGACTCTAAAAGAAGCACTCTC
CAAACGGGAGAAGAGTACTAGTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTA
CCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCAACAGAAAAT
AACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGAGAAATATAA
TGCTGGTCAATTTTCTGGGTTGCATGCTTCCAGTAACATCTATTCAACAGAAACAATGCA
CTTGGCCACAAAAATCCATACAGAAGGTTCAGGTACCAAGACCAAGGGTACCAGACTTGA
GCGAGCTATCCGTGACCTCCAAAACATTGTCACTGAATACAAACCACAGATTCTTGATGT
ACATGAGGCTGATGCAAATTGCCAGGTAGCAGTTAAAAGAAGATTGCCACAAGAAGTAAA
ACAAAAACTTGCTAAGGTCGCAAGGCTATCGGCAAATCAAGGAAAAATACCAGAACATGA
GCTGATCAATCGCCTCATGGGCATAGTTGGCCACCTTGTGCACCGTAGGACACTGAAGAG
AAACATGAAAGAAATGGTGCAATCAGGTTTATGTGCTAAACAAGAGAAGGCTGGGAAATT
GCAACAAGTGAAAATGGAAATCTATGNNNTGGTCAANNNACGTCTAGCCACCAAACCTAA
GGGTGCTGAACATAAGGTTGAATCTATNNNTGGCTTNCANGATCCTGTNANNNANNNTGN
NNNNATGGCCTNGNNNNNNAAATCTGT

consensusID : consensus_7315#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 827
fasta sequence

                              [GTCGTGGACGAAGATGCTCAAGGAGGCTGGCCTCGGAGCTGCCTTGCCGCCCCCGCTGCCGGCGGCGGCGGCACAGCCGGCGGTCGCCCCCCTCCCTGGACCATCTGGTGCGACACATCCTACAGAAAATGACTGCGCACAATCAAATCGGTTCAATTCAGTTATTGAGAAAATTGAGCGCCTTTACATGGGCAAAAATAGTAGTGATGAGGAAGACTTGGATGATGCGCCTGATGATGATCAGTATGACACAGAAGATTCGTTTATTGATGATGATGAATTGGATGAATATTTTGAAGTTGACAATTTTGCAACCAAGCACAATGGTTATTTTGTGAACAAAGGAAAATTGGAACAAATTGACTTTGATTCAGTACAGACTGTTGAACCAAAGAAACAAAGACGAAAAGATTCATCAAGTTCTTATATTGAGAATAACAAGGAATTTGCTCCAGGCTCTTCCTCATACATGGGCACGCCTTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGGAAGAGTACTATTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCAACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGAGAAATATAATGCTGGTCAATTTTCTGGTTTGCATGCTTCCAGTAACATCTATTCAACAGAAACAATGGTAAGAATCAAGGAAACTGGTATTGTGACTTGTGAGCATGGTGCAAACCATAGTTATCTTTTCATCCCCCAAGTACATGGCA]

[+] EMBL CB631701             [GTCGTGGACGAAGATGCTCAAGGAGGCTGGCCTCGGAGCTGCCTTGCCGCCCCCGCTGCCGGCGGCGGCGGCACAGCCGGCGGTCGCCCCCCTCCCTGGACCATCTGGTGCGACACATCCTACAGAAAATGACTGCGCACAATCAAATCGGTTCAATTCAGTTATTGAGAAAATTGAGCGCCTTTACATGGGCAAAAATAGTAGTGATGAGGAAGACTTGGATGATGCGCCTGATGATGATCAGTATGACACAGAAGATTCGTTTATTGATGATGATGAATTGGATGAATATTTTGAAGTTGACAATTTTGCAACCAAGCACAATGGTTATTTTGTGAACAAAGGAAAATTGGAACAAATTGACTTTGATTCAGTACAGACTGTTGAACCAAAGAAACAAAGACGAAAAGATTCATCAAGTTCTTATATTGAGAATAACAAGGAATTTGCTCCAGGCTCTTCCTCATACATGGGCACGCCTTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGGAAGAGTACTATTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCAACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGAGAAATATAATGCTGGTCAATTTTCTGGTTTGCATGCTTCCAGTAACATCTATTCAACAGAAACAATGGTAAGAATCAAGGAAACTGGTATTGTGACTTGTGAGCATGGTGCAAACCATAGTTATCTTTTCATCCCCCAAGTACATGGCA]
[+] EMBL CF304308             [         GAAGATGCTCAAGGAGGCTGACCTCGGAGCTGCCTTGCCGCCCCCGCCGCCGGCGGCGGCGGCACAGCCGGCGGTCGCCCCCCTCCCTGGACCATCTGGTGCGACACATCCTACAGAAAATGACTGCGCACAATCAAATCTGTTCAATTCAGTTATTGAGAAAATTGAGCGCCTTTACATGGGCAAAAATAGTAGTGATGAGGAAGACTTGGATGATGCGCCTGATGATGATCAGTATGACACAGAAGATTCGTTTATTGATGATGATGAATTGGATGAATATTTTGAAGTTGACAATTTTGCAACCAAGCACAATGGTTATTTTGTGAACAAAGGAAAATTGGAACAAATTGACTTTGATTCAGTACAGACTGTTGAACCAAAGAAACGAAGACGAAAAGACTCATCAAGTTCTTATATTGAGAATAACAAGGAATTTTCTCCAGGCTCTTCCTCATACATGGGCACGCCTTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGGAAGAGTACTAGTAATGGTCACAAATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAG                                                                                                                                                                                                                                                ]




>consensus_7315#1
GTCGTGGACGAAGATGCTCAAGGAGGCTGGCCTCGGAGCTGCCTTGCCGCCCCCGCTGCC
GGCGGCGGCGGCACAGCCGGCGGTCGCCCCCCTCCCTGGACCATCTGGTGCGACACATCC
TACAGAAAATGACTGCGCACAATCAAATCGGTTCAATTCAGTTATTGAGAAAATTGAGCG
CCTTTACATGGGCAAAAATAGTAGTGATGAGGAAGACTTGGATGATGCGCCTGATGATGA
TCAGTATGACACAGAAGATTCGTTTATTGATGATGATGAATTGGATGAATATTTTGAAGT
TGACAATTTTGCAACCAAGCACAATGGTTATTTTGTGAACAAAGGAAAATTGGAACAAAT
TGACTTTGATTCAGTACAGACTGTTGAACCAAAGAAACAAAGACGAAAAGATTCATCAAG
TTCTTATATTGAGAATAACAAGGAATTTGCTCCAGGCTCTTCCTCATACATGGGCACGCC
TTTAAGAGACTCTAAAAGAAGCACTCTCCAAACGGGGAAGAGTACTATTAATGGTCACAA
ATCTGGAGCTAATGGAACATTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCC
AGGACATCTTGGCCTCCAACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAA
GAACATGCACCACAAAGAGAAATATAATGCTGGTCAATTTTCTGGTTTGCATGCTTCCAG
TAACATCTATTCAACAGAAACAATGGTAAGAATCAAGGAAACTGGTATTGTGACTTGTGA
GCATGGTGCAAACCATAGTTATCTTTTCATCCCCCAAGTACATGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7315#0      CAAAGAAACGAAGACGAAAAGACTCATCAGGGTCTTATGTTGAGAATAACAAGGAATTTT 60
consensus_7315#1      ------GTCGTGGACGAAGATGCTCAA-GGAGGCTGGCCTCGGAGCTGCCTTGCCGCCCC 53
                              **  ****** *  ****   * * **    * *    *  *  *       

consensus_7315#0      CTC---CAGGGTCTTCCGCATAC---ATGGGCACGCCGTTTAAGAGACTCTAAAAGAAGC 114
consensus_7315#1      CGCTGCCGGCGGCGGCGGCACAGCCGGCGGTCGCCCCCCTCCCTGGACCATCTGGTGCG- 112
                      * *   * * * *  * *** *      ** * * **  *     ***  *       * 

consensus_7315#0      ACTCTCCAAACGGGAGAAGAGTACTAGTAATGGTCACAAATC--TGGAGCTAATGGAACA 172
consensus_7315#1      ACACATCCTACAGAAAATGACTGCGCACAATCAAATCGGTTCAATTCAGTTATTGAGAAA 172
                      ** *  *  ** * * * ** * *    ***     *   **  *  ** ** **  * *

consensus_7315#0      TTTGAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCC-TCCA 231
consensus_7315#1      ATTGAGCGCCTTTACATGG---GCAAAAATAGTAGTGATGAGGAAGACTTGGATGATGCG 229
                       *****  ** ***    *    *  * * *    ** *   * * *  * *    * * 

consensus_7315#0      ACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAAGA 291
consensus_7315#1      CCTGATGATGATCAGTATGACACAGAAGATTCGTTTATTGATGATGATGAATTG-GATGA 288
                       * **  ** *    **       ***      *** *  * **  *** *     * **

consensus_7315#0      GAAATATAATGCTGGTCAATTTTCTGGGTTGCATGCTTCCAGTAACATCTATTCAACAGA 351
consensus_7315#1      ATATTTTGAAGTTGA-CAATTTT-------GCAACCAAGCA-CAATGGTTATTTTGTGAA 339
                        * * * * * **  *******       ***  *   **  **    ****      *

consensus_7315#0      AACAATGCACTTGGCCACAAAAATCCATACAGAAGGTTCAGGTACCAAGACCAAGGGTAC 411
consensus_7315#1      CAAAGGAAAATTGGA-ACAAATTGACTTTGATTCAGTACAGACTGTTGAACCAAAGAAAC 398
                       * *    * ****  *****    * *  *    ** ***        ***** *  **

consensus_7315#0      CAGACTTGAGCGAGCTATCCGTGACCTCCAAAACATTGTCACTGAATACAAACCACAGAT 471
consensus_7315#1      AAAGACGAAAAGATTCATC-AAGTTCTTATATTGAGAATAACAAGGAATTTGCTCCAGGC 457
                       *      *  **   ***   *  **   *   *   * **     *    *  ***  

consensus_7315#0      TCTTGAT-GTACATGAGGCTGATGCAAATTGCCAGGTAGCAGTTAAAAGAAGATTGCCAC 530
consensus_7315#1      TCTTCCTCATACATGGG-------CACGCCTTTAAG-AGACTCTAAAAGAAGCACTCTCC 509
                      ****  *  ****** *       **       * * **    *********    *  *

consensus_7315#0      AAGAAGTAAAACAAAAACTTGCTAAGGTCGCAAGGCTATCGGCAAATCAAGGAAAAATAC 590
consensus_7315#1      AAACGGGGAAG--AGTACTATTAATGGTCACAAATCTG-----GAGCTAATGGAACATTT 562
                      **   *  **   *  ***    * **** ***  **       *   ** * ** **  

consensus_7315#0      CAGAACATGAGCTGATCA-ATCGCCTCATGGGCATAGTTGGCCACCTTGTGCACCGTAGG 649
consensus_7315#1      GAGTACCCTTATTCAGCATACCGAGACAAGGATGCTCCAGGACATCTTGGCCTCCA---- 618
                       ** **      * * ** * **   ** **        ** ** ****  * **     

consensus_7315#0      ACACTGAAGAGAAACATGAAAGAAATGGTGCAATCAGGTTTATGTGCTAAACAAGAGAAG 709
consensus_7315#1      --ACAGAAAATAACTTCTAATGGGGCGAACCAAGATTTGTCAAAGAACATGCACCACAAA 676
                        ** *** * **     ** *    *   ***      * *      *  **  * ** 

consensus_7315#0      GCTGGGAAATTGCAACAAGTGAAAATGGAAATCTATGNNNTGGTCAANNNACGTCTAGCC 769
consensus_7315#1      G--AGAAATATAATGCTGGTCAATTTTCTGGTTTGCATGCT--TCCAGTAACATCTATTC 732
                      *   * **  *    *  ** **  *     * *      *  ** *   ** ****  *

consensus_7315#0      ACCAAACCTAAGGGTGCTGAACATA-AGGTTGAATCTATNNNTGGCTTNCANGATCCTGT 828
consensus_7315#1      AACAGAAACAATGGTAAGAATCAAGGAAACTGGTATTGTGACTTGTGAGCATGGTGCAAA 792
                      * ** *   ** ***    * **   *   **    * *   * *    ** * * *   

consensus_7315#0      NANNNANNNTGNNNNNATGGCCTNGNNNNNNAAATCTGT 867
consensus_7315#1      CCATAGTTATCTTTTCATCCCCCAAGTACATGGCA---- 827
                               *      **  **