cluster # 732

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Oryza sativa
cluster # 732 cluster # 732 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_732#0 length = 849 sequences # 1

consensus_732#1 length = 543 sequences # 1

consensusID : consensus_732#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 849
fasta sequence

                              [GTCCATGCTGGAAAAAGCCAAGCTAAGACTAGCCGAACGCCGTGATCGCAAAGAGATTAAGGCCACAATCCAAGCTAATCGGCAGCTTGTGCATGAAGAAAAAACCAAACTTGATCAGCTATCTGAAGGTCCGATCAAATCCAATATTGACCGGCTCGAAGCTCGCAAAATTGAGCTCTTGGCGCAACTTGAGGAATGCAATGCCGAGCTAGATATAGAACACAAAAAGCTAGCCGATCTCCCAAAATCAATTGAAGAACAAAAAGCAAGGCTCAAATCGGCTATCAAGAATGTTGCTGACTTAACCAAGTCTCTGAAAGTCATCTCTGGAACTGATACTCAAGATGCCCAAGCTATTGAAGAAGTAGAACAAATCAGGCAAAGGGCTATTTTGGCTATCCAGCGATACTTGTCTCAATAACTTTGTGTAATAGGACTCAGAAATTTTTTTGTAATCAGCTAAGATGCTCTAGTACTTTACTGTCTTGACAATCCTTTGTGCCGATTAATATGACTTTTAAAATTCGCTAAAAAAATTTGCCTCAAAAAATTTGCATTGCATTTTGATATATAGGTGCCCCCCTAATTTTACAATGACAAAAGCATTGATAAAATTATAAAACAACTAAGGGCGATATAACAATATCGGCCATTGTACATCGGCAAATCACAACCGATTATATCATGAAAAACAACTAAGGGCGATATAACAATATCGGCCATCTCAAGGTGATGCAAACACATCGGCTGTCATGCATCAGCAATACTAGCCGATCATGCGTTAACCCAAACACTTGGGTAATATTTCTTCAAATACTTGCCATTGAGTGCTCGCCCATAGACTTCACT]

[+] EMBL CB633027             [GTCCATGCTGGAAAAAGCCAAGCTAAGACTAGCCGAACGCCGTGATCGCAAAGAGATTAAGGCCACAATCCAAGCTAATCGGCAGCTTGTGCATGAAGAAAAAACCAAACTTGATCAGCTATCTGAAGGTCCGATCAAATCCAATATTGACCGGCTCGAAGCTCGCAAAATTGAGCTCTTGGCGCAACTTGAGGAATGCAATGCCGAGCTAGATATAGAACACAAAAAGCTAGCCGATCTCCCAAAATCAATTGAAGAACAAAAAGCAAGGCTCAAATCGGCTATCAAGAATGTTGCTGACTTAACCAAGTCTCTGAAAGTCATCTCTGGAACTGATACTCAAGATGCCCAAGCTATTGAAGAAGTAGAACAAATCAGGCAAAGGGCTATTTTGGCTATCCAGCGATACTTGTCTCAATAACTTTGTGTAATAGGACTCAGAAATTTTTTTGTAATCAGCTAAGATGCTCTAGTACTTTACTGTCTTGACAATCCTTTGTGCCGATTAATATGACTTTTAAAATTCGCTAAAAAAATTTGCCTCAAAAAATTTGCATTGCATTTTGATATATAGGTGCCCCCCTAATTTTACAATGACAAAAGCATTGATAAAATTATAAAACAACTAAGGGCGATATAACAATATCGGCCATTGTACATCGGCAAATCACAACCGATTATATCATGAAAAACAACTAAGGGCGATATAACAATATCGGCCATCTCAAGGTGATGCAAACACATCGGCTGTCATGCATCAGCAATACTAGCCGATCATGCGTTAACCCAAACACTTGGGTAATATTTCTTCAAATACTTGCCATTGAGTGCTCGCCCATAGACTTCACT]




>consensus_732#0
GTCCATGCTGGAAAAAGCCAAGCTAAGACTAGCCGAACGCCGTGATCGCAAAGAGATTAA
GGCCACAATCCAAGCTAATCGGCAGCTTGTGCATGAAGAAAAAACCAAACTTGATCAGCT
ATCTGAAGGTCCGATCAAATCCAATATTGACCGGCTCGAAGCTCGCAAAATTGAGCTCTT
GGCGCAACTTGAGGAATGCAATGCCGAGCTAGATATAGAACACAAAAAGCTAGCCGATCT
CCCAAAATCAATTGAAGAACAAAAAGCAAGGCTCAAATCGGCTATCAAGAATGTTGCTGA
CTTAACCAAGTCTCTGAAAGTCATCTCTGGAACTGATACTCAAGATGCCCAAGCTATTGA
AGAAGTAGAACAAATCAGGCAAAGGGCTATTTTGGCTATCCAGCGATACTTGTCTCAATA
ACTTTGTGTAATAGGACTCAGAAATTTTTTTGTAATCAGCTAAGATGCTCTAGTACTTTA
CTGTCTTGACAATCCTTTGTGCCGATTAATATGACTTTTAAAATTCGCTAAAAAAATTTG
CCTCAAAAAATTTGCATTGCATTTTGATATATAGGTGCCCCCCTAATTTTACAATGACAA
AAGCATTGATAAAATTATAAAACAACTAAGGGCGATATAACAATATCGGCCATTGTACAT
CGGCAAATCACAACCGATTATATCATGAAAAACAACTAAGGGCGATATAACAATATCGGC
CATCTCAAGGTGATGCAAACACATCGGCTGTCATGCATCAGCAATACTAGCCGATCATGC
GTTAACCCAAACACTTGGGTAATATTTCTTCAAATACTTGCCATTGAGTGCTCGCCCATA
GACTTCACT

consensusID : consensus_732#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [AGAGGACCACAAGGGGGACTAGCCGAATGCCGTGAGCGCAAAGAGATTGAGGCCCCAATTCAAGCTAATCAGCAGCTTGTGCATGAAGAGAAGACCAAACTTGATCAGCTATTTAAAGGTCCGATCAAATCCAATATTGATCGGCTCGAAGCTCACAAGAATGAGCTCTTGGCGCAACTTGAAGAATTCAATGCCGAGCTAGATATGGAACCCAAAAAGCTAGCCGATCTCCCAAAATCAATTGAAGAACAAAGGGCAAGGCTCCAATTGGCTATCAAAAATGTTGCTGACTTAACCAAGTCCCTGAAAGTCATCTCTGGAACTGATGCCCAAGATGCCCAAGCTATTGAAGAAGTAGAACAAATTAGGCAAAAGGCTATTTTGGCTATCCAGCGATACTTGTTTCAATAACTTTTATGTGATAGGGCTTAGAAATCTTTGTAATTGGCTAAGATACTCTAGTACTTTACTGTCTTGACAGTCCTTTGTGCCGATTAATATGTGATGTGGCCATGGCTATTTCGGAAAAAAAAAAAAAAAAAA]

[-] EMBL CA762742             [AGAGGACCACAAGGGGGACTAGCCGAATGCCGTGAGCGCAAAGAGATTGAGGCCCCAATTCAAGCTAATCAGCAGCTTGTGCATGAAGAGAAGACCAAACTTGATCAGCTATTTAAAGGTCCGATCAAATCCAATATTGATCGGCTCGAAGCTCACAAGAATGAGCTCTTGGCGCAACTTGAAGAATTCAATGCCGAGCTAGATATGGAACCCAAAAAGCTAGCCGATCTCCCAAAATCAATTGAAGAACAAAGGGCAAGGCTCCAATTGGCTATCAAAAATGTTGCTGACTTAACCAAGTCCCTGAAAGTCATCTCTGGAACTGATGCCCAAGATGCCCAAGCTATTGAAGAAGTAGAACAAATTAGGCAAAAGGCTATTTTGGCTATCCAGCGATACTTGTTTCAATAACTTTTATGTGATAGGGCTTAGAAATCTTTGTAATTGGCTAAGATACTCTAGTACTTTACTGTCTTGACAGTCCTTTGTGCCGATTAATATGTGATGTGGCCATGGCTATTTCGGAAAAAAAAAAAAAAAAAA]




>consensus_732#1
AGAGGACCACAAGGGGGACTAGCCGAATGCCGTGAGCGCAAAGAGATTGAGGCCCCAATT
CAAGCTAATCAGCAGCTTGTGCATGAAGAGAAGACCAAACTTGATCAGCTATTTAAAGGT
CCGATCAAATCCAATATTGATCGGCTCGAAGCTCACAAGAATGAGCTCTTGGCGCAACTT
GAAGAATTCAATGCCGAGCTAGATATGGAACCCAAAAAGCTAGCCGATCTCCCAAAATCA
ATTGAAGAACAAAGGGCAAGGCTCCAATTGGCTATCAAAAATGTTGCTGACTTAACCAAG
TCCCTGAAAGTCATCTCTGGAACTGATGCCCAAGATGCCCAAGCTATTGAAGAAGTAGAA
CAAATTAGGCAAAAGGCTATTTTGGCTATCCAGCGATACTTGTTTCAATAACTTTTATGT
GATAGGGCTTAGAAATCTTTGTAATTGGCTAAGATACTCTAGTACTTTACTGTCTTGACA
GTCCTTTGTGCCGATTAATATGTGATGTGGCCATGGCTATTTCGGAAAAAAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_732#0      GTCCATGCTGGAAAAAGCCA-AGCTAAGACTAGCCGAACGCCGTGATCGCAAAGAGATTA 59
consensus_732#1      -----------AGAGGACCACAAGGGGGACTAGCCGAATGCCGTGAGCGCAAAGAGATTG 49
                                * *   *** *     *********** ******* ************ 

consensus_732#0      AGGCCACAATCCAAGCTAATCGGCAGCTTGTGCATGAAGAAAAAACCAAACTTGATCAGC 119
consensus_732#1      AGGCCCCAATTCAAGCTAATCAGCAGCTTGTGCATGAAGAGAAGACCAAACTTGATCAGC 109
                     ***** **** ********** ****************** ** ****************

consensus_732#0      TATCTGAAGGTCCGATCAAATCCAATATTGACCGGCTCGAAGCTCGCAAAATTGAGCTCT 179
consensus_732#1      TATTTAAAGGTCCGATCAAATCCAATATTGATCGGCTCGAAGCTCACAAGAATGAGCTCT 169
                     *** * ************************* ************* *** * ********

consensus_732#0      TGGCGCAACTTGAGGAATGCAATGCCGAGCTAGATATAGAACACAAAAAGCTAGCCGATC 239
consensus_732#1      TGGCGCAACTTGAAGAATTCAATGCCGAGCTAGATATGGAACCCAAAAAGCTAGCCGATC 229
                     ************* **** ****************** **** *****************

consensus_732#0      TCCCAAAATCAATTGAAGAACAAAAAGCAAGGCTCAAATCGGCTATCAAGAATGTTGCTG 299
consensus_732#1      TCCCAAAATCAATTGAAGAACAAAGGGCAAGGCTCCAATTGGCTATCAAAAATGTTGCTG 289
                     ************************  ********* *** ********* **********

consensus_732#0      ACTTAACCAAGTCTCTGAAAGTCATCTCTGGAACTGATACTCAAGATGCCCAAGCTATTG 359
consensus_732#1      ACTTAACCAAGTCCCTGAAAGTCATCTCTGGAACTGATGCCCAAGATGCCCAAGCTATTG 349
                     ************* ************************ * *******************

consensus_732#0      AAGAAGTAGAACAAATCAGGCAAAGGGCTATTTTGGCTATCCAGCGATACTTGTCTCAAT 419
consensus_732#1      AAGAAGTAGAACAAATTAGGCAAAAGGCTATTTTGGCTATCCAGCGATACTTGTTTCAAT 409
                     **************** ******* ***************************** *****

consensus_732#0      AACTTT-GTGTAATAGGACTCAGAAATTTTTTTGTAATCAGCTAAGATGCTCTAGTACTT 478
consensus_732#1      AACTTTTATGTGATAGGGCTTAGAAATCTT--TGTAATTGGCTAAGATACTCTAGTACTT 467
                     ******  *** ***** ** ****** **  ******  ******** ***********

consensus_732#0      TACTGTCTTGACAATCCTTTGTGCCGATTAATATGACTTTTAAAATTCGCTA----AAAA 534
consensus_732#1      TACTGTCTTGACAGTCCTTTGTGCCGATTAATATGTGATGTGGCCATGGCTATTTCGGAA 527
                     ************* *********************   * *     * ****      **

consensus_732#0      AATTTGCCTCAAAAAATTTGCATTGCATTTTGATATATAGGTGCCCCCCTAATTTTACAA 594
consensus_732#1      AAAAAAAAAAAAAAAA-------------------------------------------- 543
                     **        ******                                            

consensus_732#0      TGACAAAAGCATTGATAAAATTATAAAACAACTAAGGGCGATATAACAATATCGGCCATT 654
consensus_732#1      ------------------------------------------------------------
                                                                                 

consensus_732#0      GTACATCGGCAAATCACAACCGATTATATCATGAAAAACAACTAAGGGCGATATAACAAT 714
consensus_732#1      ------------------------------------------------------------
                                                                                 

consensus_732#0      ATCGGCCATCTCAAGGTGATGCAAACACATCGGCTGTCATGCATCAGCAATACTAGCCGA 774
consensus_732#1      ------------------------------------------------------------
                                                                                 

consensus_732#0      TCATGCGTTAACCCAAACACTTGGGTAATATTTCTTCAAATACTTGCCATTGAGTGCTCG 834
consensus_732#1      ------------------------------------------------------------
                                                                                 

consensus_732#0      CCCATAGACTTCACT 849
consensus_732#1      ---------------