cluster # 7320

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Oryza sativa
cluster # 7320 cluster # 7320 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7320#0 length = 421 sequences # 1
consensus_7320#1 length = 373 sequences # 1

consensus_7320#2 length = 358 sequences # 1
consensus_7320#3 length = 342 sequences # 1

consensusID : consensus_7320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCCCAAAAAGGGGCTAAAAATTTAAAACCACCATCGGGGTTATGGATATGGATGGATGGACCCAAAACCCCCACCCACTTGGGCCTACAAAAGGGAATGGGGGGGGGGAAATAAACAAGGGATTTTTTGGAATTTTACCCCCTTAACCCCTGGGAAGGGCCCAGGGGGAAATTTTTTAAACCCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGGAAAAACGGTTCCCGGGGGAAAAAGGTATTCCCTCACAAATTCCCACAAAAAAAAAACCCGGAACCTAAAAGGGAAAACCCGGGGGGGCCCAAGAGGGGGCCCACCCCCATTAATTGGGGTGGGCCCACC]

[+] EMBL CF329565             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCCCAAAAAGGGGCTAAAAATTTAAAACCACCATCGGGGTTATGGATATGGATGGATGGACCCAAAACCCCCACCCACTTGGGCCTACAAAAGGGAATGGGGGGGGGGAAATAAACAAGGGATTTTTTGGAATTTTACCCCCTTAACCCCTGGGAAGGGCCCAGGGGGAAATTTTTTAAACCCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGGAAAAACGGTTCCCGGGGGAAAAAGGTATTCCCTCACAAATTCCCACAAAAAAAAAACCCGGAACCTAAAAGGGAAAACCCGGGGGGGCCCAAGAGGGGGCCCACCCCCATTAATTGGGGTGGGCCCACC]




>consensus_7320#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCCCA
AAAAGGGGCTAAAAATTTAAAACCACCATCGGGGTTATGGATATGGATGGATGGACCCAA
AACCCCCACCCACTTGGGCCTACAAAAGGGAATGGGGGGGGGGAAATAAACAAGGGATTT
TTTGGAATTTTACCCCCTTAACCCCTGGGAAGGGCCCAGGGGGAAATTTTTTAAACCCGG
CGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGGAAAAACGG
TTCCCGGGGGAAAAAGGTATTCCCTCACAAATTCCCACAAAAAAAAAACCCGGAACCTAA
AAGGGAAAACCCGGGGGGGCCCAAGAGGGGGCCCACCCCCATTAATTGGGGTGGGCCCAC
C

consensusID : consensus_7320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCCCGGGCCCCCAACAAAAAATTTTTTTTCCGGAAACCCCCCCAATTTTCCCCCCCAAAAAAGGGGGTTTCCCCCCCCCCCCCCCGGCAAGGGCCCAGGGGGAAATTTTTTAAACCCCCCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAAAGGTATCCCCCCCCAAATCCCCCCAAAAAAAAAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTTATTGGGGGGGCCCCC]

[+] EMBL CF297905             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCCCGGGCCCCCAACAAAAAATTTTTTTTCCGGAAACCCCCCCAATTTTCCCCCCCAAAAAAGGGGGTTTCCCCCCCCCCCCCCCGGCAAGGGCCCAGGGGGAAATTTTTTAAACCCCCCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAAAGGTATCCCCCCCCAAATCCCCCCAAAAAAAAAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTTATTGGGGGGGCCCCC]




>consensus_7320#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTGCCCCCCGGGCCCCCAACAAAAAATTTTTTTTCCGGAAACCCCCCCAA
TTTTCCCCCCCAAAAAAGGGGGTTTCCCCCCCCCCCCCCCGGCAAGGGCCCAGGGGGAAA
TTTTTTAAACCCCCCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAAC
AAGGGCAAAACCGGTTCCCGGGGGAAAAAGGTATCCCCCCCCAAATCCCCCCAAAAAAAA
AACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTTAT
TGGGGGGGCCCCC

consensusID : consensus_7320#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [GATACGCTACGTAACGGCCTGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCAAAAAAAAAAAATTTTTACCCCCCCCCTTAAACCCTGGGAAGGGCCCAGGGGGAAATTTTTTAAACCCCCGGGAACAATCCCCTTTAGGGGGGGGAAATTTTAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTTCCCCCCCAAATTCCCCCAAAATAAAAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCAAAAAGGGGGCCCACCCCCCTTTATTGGGGGGGGCCCCCC]

[+] EMBL CF328350             [GATACGCTACGTAACGGCCTGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCAAAAAAAAAAAATTTTTACCCCCCCCCTTAAACCCTGGGAAGGGCCCAGGGGGAAATTTTTTAAACCCCCGGGAACAATCCCCTTTAGGGGGGGGAAATTTTAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTTCCCCCCCAAATTCCCCCAAAATAAAAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCAAAAAGGGGGCCCACCCCCCTTTATTGGGGGGGGCCCCCC]




>consensus_7320#2
GATACGCTACGTAACGGCCTGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCAAAAAAAAAAAAT
TTTTACCCCCCCCCTTAAACCCTGGGAAGGGCCCAGGGGGAAATTTTTTAAACCCCCGGG
AACAATCCCCTTTAGGGGGGGGAAATTTTAACCTGGGGGAAACAAGGGCAAAACCGGTTC
CCGGGGGAAAATGGTTTTCCCCCCCAAATTCCCCCAAAATAAAAACCCGAAACATAAAAG
GGAAAACCCGGGGGGCCCAAAAAGGGGGCCCACCCCCCTTTATTGGGGGGGGCCCCCC

consensusID : consensus_7320#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGCCCCTTTGGGAAACTGGTCCCCGAAACTTTGGCCCAAAGGGCCCTTGGGTAAAACCCGGCGGGACTGGGCAAAAATTTTTACCCCCTTAAACCCTGGGAAGGGCCCAAGGGGAAATTCTTTAAAACCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGCAAAAACGGGTCCCGGGGGAAAAAGGTATTCCCCCCCAAATCCCCACAAAAAAACAACCCGAAACCAAAAAGGGAAAACCCGG]

[+] EMBL CF331727             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGCCCCTTTGGGAAACTGGTCCCCGAAACTTTGGCCCAAAGGGCCCTTGGGTAAAACCCGGCGGGACTGGGCAAAAATTTTTACCCCCTTAAACCCTGGGAAGGGCCCAAGGGGAAATTCTTTAAAACCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGCAAAAACGGGTCCCGGGGGAAAAAGGTATTCCCCCCCAAATCCCCACAAAAAAACAACCCGAAACCAAAAAGGGAAAACCCGG]




>consensus_7320#3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTGGGGGGCCCCTTTGGGAAACTGGTCCCCGAAACTTTGGCCCAAAGGG
CCCTTGGGTAAAACCCGGCGGGACTGGGCAAAAATTTTTACCCCCTTAAACCCTGGGAAG
GGCCCAAGGGGAAATTCTTTAAAACCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTG
AACCTGGGGGAAACAAGGGCAAAAACGGGTCCCGGGGGAAAAAGGTATTCCCCCCCAAAT
CCCCACAAAAAAACAACCCGAAACCAAAAAGGGAAAACCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7320#0      -----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43
consensus_7320#3      -----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTT 43
consensus_7320#1      -----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43
consensus_7320#2      GATACGCTACGTAACGGCCTGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                                         *     * ***********************   *******

consensus_7320#0      TTTTTTTTTGGGCCCCAAAAAGGGGCTAAAAATTTAAAACCACCATCGGGGTTATGGATA 103
consensus_7320#3      TTTTTTTTTTTTTT------------------TTTTTTTTTTTTTTTTGGGGGGCCCCTT 85
consensus_7320#1      TTTTTTTTTTTTTT------------TTTTTTTTTTTTTTTGCCCCCCGGGCCCCCAACA 91
consensus_7320#2      TTTTTTTTTTTTTT------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTT 102
                      *********                       ***                         

consensus_7320#0      TGGATGGATGGACCCAAAACCCCCACCCACTTGGGCCTACAAAAGGGAATGGGGGGGGGG 163
consensus_7320#3      TGGGAAACTGGTCCCCGAAACTTTGGCCCAAAGGGCCCTTGGGTAAAACCCGGCGGGACT 145
consensus_7320#1      AAAAATTTTTTTTCCGGAAACCCCCCCAATTTTCCCCCCCAAAAAA------GGGGG--- 142
consensus_7320#2      GGGGCAAAAAAA--AAAAATTTTTACCCC-----------------------------C- 130
                                       **       *                                 

consensus_7320#0      AAATAAACAAGGGATTTTTTGGAATTTTACCCCCTTAACCCCTGGGAAGGGCCCAGGGGG 223
consensus_7320#3      GGGCAAA--------------AATTTTTACCCCCTTAAACCCTGGGAAGGGCCCAAGGGG 191
consensus_7320#1      -------------------------TTTCCCCCCCCCCCCCCCGGCAAGGGCCCAGGGGG 177
consensus_7320#2      ------------------------------CCCCTTAAACCCTGGGAAGGGCCCAGGGGG 160
                                                    ****     *** ** ********* ****

consensus_7320#0      AAATTTTTTAAACCCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGA 283
consensus_7320#3      AAATTCTTTAAAACCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGA 251
consensus_7320#1      AAATTTTTTAAACCCCCCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGA 237
consensus_7320#2      AAATTTTTTAAACCCCCGGGAACAATCCCCTTTAGGGGGGGGAAATTTTAACCTGGGGGA 220
                      ***** ****** **   ****************************** ***********

consensus_7320#0      AACAAGGGGAAAAACGGTTCCCGGGGGAAAAAGGTATTCCCTCACAAATTCCCACAAAAA 343
consensus_7320#3      AACAAGGGCAAAAACGGGTCCCGGGGGAAAAAGGTATTCCCCCCCAAATCCCCACAAAAA 311
consensus_7320#1      AACAAGGGCAAAACCGGTTCCCGGGGGAAAAAGGTATCCCCCCCCAAATCCCCCCAAAAA 297
consensus_7320#2      AACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTTCCCCCCCAAATTCCCCCAAAAT 280
                      ******** **** *** ************* *** * *** * ***** *** ***** 

consensus_7320#0      AAAAACCCGGAACCTAAAAGGGAAAACCCGGGGGGGCCCAAGAGGGGGCCCACCCCCATT 403
consensus_7320#3      AACAACCCGAAACCAAAAAGGGAAAACCCGG----------------------------- 342
consensus_7320#1      AAAAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTT 357
consensus_7320#2      AAAAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCAAAAAGGGGGCCCACCCCCCTT 340
                      ** ****** ***  ****************                             

consensus_7320#0      AATTGGGGTGGGCCCACC 421
consensus_7320#3      ------------------
consensus_7320#1      TATTGGGGGGGCCCCC-- 373
consensus_7320#2      TATTGGGGGGGGCCCCCC 358