These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCCCAAAAAGGGGCTAAAAATTTAAAACCACCATCGGGGTTATGGATATGGATGGATGGACCCAAAACCCCCACCCACTTGGGCCTACAAAAGGGAATGGGGGGGGGGAAATAAACAAGGGATTTTTTGGAATTTTACCCCCTTAACCCCTGGGAAGGGCCCAGGGGGAAATTTTTTAAACCCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGGAAAAACGGTTCCCGGGGGAAAAAGGTATTCCCTCACAAATTCCCACAAAAAAAAAACCCGGAACCTAAAAGGGAAAACCCGGGGGGGCCCAAGAGGGGGCCCACCCCCATTAATTGGGGTGGGCCCACC] [+] EMBL CF329565 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCCCCAAAAAGGGGCTAAAAATTTAAAACCACCATCGGGGTTATGGATATGGATGGATGGACCCAAAACCCCCACCCACTTGGGCCTACAAAAGGGAATGGGGGGGGGGAAATAAACAAGGGATTTTTTGGAATTTTACCCCCTTAACCCCTGGGAAGGGCCCAGGGGGAAATTTTTTAAACCCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGGAAAAACGGTTCCCGGGGGAAAAAGGTATTCCCTCACAAATTCCCACAAAAAAAAAACCCGGAACCTAAAAGGGAAAACCCGGGGGGGCCCAAGAGGGGGCCCACCCCCATTAATTGGGGTGGGCCCACC] consensusID : consensus_7320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCCCGGGCCCCCAACAAAAAATTTTTTTTCCGGAAACCCCCCCAATTTTCCCCCCCAAAAAAGGGGGTTTCCCCCCCCCCCCCCCGGCAAGGGCCCAGGGGGAAATTTTTTAAACCCCCCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAAAGGTATCCCCCCCCAAATCCCCCCAAAAAAAAAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTTATTGGGGGGGCCCCC] [+] EMBL CF297905 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCCCCGGGCCCCCAACAAAAAATTTTTTTTCCGGAAACCCCCCCAATTTTCCCCCCCAAAAAAGGGGGTTTCCCCCCCCCCCCCCCGGCAAGGGCCCAGGGGGAAATTTTTTAAACCCCCCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAAAGGTATCCCCCCCCAAATCCCCCCAAAAAAAAAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTTTATTGGGGGGGCCCCC] consensusID : consensus_7320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [GATACGCTACGTAACGGCCTGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCAAAAAAAAAAAATTTTTACCCCCCCCCTTAAACCCTGGGAAGGGCCCAGGGGGAAATTTTTTAAACCCCCGGGAACAATCCCCTTTAGGGGGGGGAAATTTTAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTTCCCCCCCAAATTCCCCCAAAATAAAAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCAAAAAGGGGGCCCACCCCCCTTTATTGGGGGGGGCCCCCC] [+] EMBL CF328350 [GATACGCTACGTAACGGCCTGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCAAAAAAAAAAAATTTTTACCCCCCCCCTTAAACCCTGGGAAGGGCCCAGGGGGAAATTTTTTAAACCCCCGGGAACAATCCCCTTTAGGGGGGGGAAATTTTAACCTGGGGGAAACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTTCCCCCCCAAATTCCCCCAAAATAAAAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCAAAAAGGGGGCCCACCCCCCTTTATTGGGGGGGGCCCCCC] consensusID : consensus_7320#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGCCCCTTTGGGAAACTGGTCCCCGAAACTTTGGCCCAAAGGGCCCTTGGGTAAAACCCGGCGGGACTGGGCAAAAATTTTTACCCCCTTAAACCCTGGGAAGGGCCCAAGGGGAAATTCTTTAAAACCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGCAAAAACGGGTCCCGGGGGAAAAAGGTATTCCCCCCCAAATCCCCACAAAAAAACAACCCGAAACCAAAAAGGGAAAACCCGG] [+] EMBL CF331727 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGCCCCTTTGGGAAACTGGTCCCCGAAACTTTGGCCCAAAGGGCCCTTGGGTAAAACCCGGCGGGACTGGGCAAAAATTTTTACCCCCTTAAACCCTGGGAAGGGCCCAAGGGGAAATTCTTTAAAACCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGAAACAAGGGCAAAAACGGGTCCCGGGGGAAAAAGGTATTCCCCCCCAAATCCCCACAAAAAAACAACCCGAAACCAAAAAGGGAAAACCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7320#0 -----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43 consensus_7320#3 -----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTT 43 consensus_7320#1 -----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43 consensus_7320#2 GATACGCTACGTAACGGCCTGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 * * *********************** ******* consensus_7320#0 TTTTTTTTTGGGCCCCAAAAAGGGGCTAAAAATTTAAAACCACCATCGGGGTTATGGATA 103 consensus_7320#3 TTTTTTTTTTTTTT------------------TTTTTTTTTTTTTTTTGGGGGGCCCCTT 85 consensus_7320#1 TTTTTTTTTTTTTT------------TTTTTTTTTTTTTTTGCCCCCCGGGCCCCCAACA 91 consensus_7320#2 TTTTTTTTTTTTTT------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTT 102 ********* *** consensus_7320#0 TGGATGGATGGACCCAAAACCCCCACCCACTTGGGCCTACAAAAGGGAATGGGGGGGGGG 163 consensus_7320#3 TGGGAAACTGGTCCCCGAAACTTTGGCCCAAAGGGCCCTTGGGTAAAACCCGGCGGGACT 145 consensus_7320#1 AAAAATTTTTTTTCCGGAAACCCCCCCAATTTTCCCCCCCAAAAAA------GGGGG--- 142 consensus_7320#2 GGGGCAAAAAAA--AAAAATTTTTACCCC-----------------------------C- 130 ** * consensus_7320#0 AAATAAACAAGGGATTTTTTGGAATTTTACCCCCTTAACCCCTGGGAAGGGCCCAGGGGG 223 consensus_7320#3 GGGCAAA--------------AATTTTTACCCCCTTAAACCCTGGGAAGGGCCCAAGGGG 191 consensus_7320#1 -------------------------TTTCCCCCCCCCCCCCCCGGCAAGGGCCCAGGGGG 177 consensus_7320#2 ------------------------------CCCCTTAAACCCTGGGAAGGGCCCAGGGGG 160 **** *** ** ********* **** consensus_7320#0 AAATTTTTTAAACCCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGA 283 consensus_7320#3 AAATTCTTTAAAACCGGCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGA 251 consensus_7320#1 AAATTTTTTAAACCCCCCGGAACAATCCCCTTTAGGGGGGGGAAATTTGAACCTGGGGGA 237 consensus_7320#2 AAATTTTTTAAACCCCCGGGAACAATCCCCTTTAGGGGGGGGAAATTTTAACCTGGGGGA 220 ***** ****** ** ****************************** *********** consensus_7320#0 AACAAGGGGAAAAACGGTTCCCGGGGGAAAAAGGTATTCCCTCACAAATTCCCACAAAAA 343 consensus_7320#3 AACAAGGGCAAAAACGGGTCCCGGGGGAAAAAGGTATTCCCCCCCAAATCCCCACAAAAA 311 consensus_7320#1 AACAAGGGCAAAACCGGTTCCCGGGGGAAAAAGGTATCCCCCCCCAAATCCCCCCAAAAA 297 consensus_7320#2 AACAAGGGCAAAACCGGTTCCCGGGGGAAAATGGTTTTCCCCCCCAAATTCCCCCAAAAT 280 ******** **** *** ************* *** * *** * ***** *** ***** consensus_7320#0 AAAAACCCGGAACCTAAAAGGGAAAACCCGGGGGGGCCCAAGAGGGGGCCCACCCCCATT 403 consensus_7320#3 AACAACCCGAAACCAAAAAGGGAAAACCCGG----------------------------- 342 consensus_7320#1 AAAAACCCGAAACCAAAAAGGGAAAACCCGGGGGGCCCCAAGAGGGGGCCCACCCCCCTT 357 consensus_7320#2 AAAAACCCGAAACATAAAAGGGAAAACCCGGGGGGCCCAAAAAGGGGGCCCACCCCCCTT 340 ** ****** *** **************** consensus_7320#0 AATTGGGGTGGGCCCACC 421 consensus_7320#3 ------------------ consensus_7320#1 TATTGGGGGGGCCCCC-- 373 consensus_7320#2 TATTGGGGGGGGCCCCCC 358 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||