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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2368 fasta sequence
[TTTTTGTTTGGCAGAAAGTTGCTGATCTTCTTGTTTTCTGATATGAAGATCCCAGAATTAACGTTCACTTTACCAGTAGTAGAATATACAGGCATAGAGAATATGACGACGGCATGCTCTCTCCTCCGAGCTGGAAGTGTATATGTGAAACAACAAACAGTACATACAGTAAAATCCAGTAGAAATATTGTGAGCTATGGTTATAGCTCATTTGCAGCACACATCTGCTTCTGTTCCTCCTCAGCTTTTCTCCACGCAACCTTGTCCTTCTCAATTTTCGAGAGATGAGGCTTCATGGAGTTCCCTAGACCCACTCCTCCCCATGCATCCATAAGTTCCTTCTCACGTGCCCTTCTGCGCTCTTGGACTGGATTAAAGCTGCCTGTCAGTGTTTCTTCAGCAGCAGAAGAAGCCAGCTTGGCTTGCTCAAGCTTCATGGAACGCTTGACAAGGATGTCAGACAGATCTGCTTCTTCATTTGTGCATTTTGAGTCATTCTTCTTTAGAAAGATCATATCACCGCTCTTTCCATGCTCCATCTTCTCCTTTTCAAGTCTGGAGA-CATGCTT-AACTAAGATCTGATCTAAACTAT-CAG-ATGCT-ATGTTAGTGTT-ACT-GTGCCTTTCCTGATGGTTCTGTTCACTGGTTCTTTCTCCCAATGTATTCCTCTTTGCATATTCAACTTTCTCCCTTTCCAAACGACTGACATGCTTAACTAGGACTTGATCCAAACTCTCCGATGCTGTAGCATTGTTATCATGCTTTCGCTGATCATGTGCCACATTGGTCAGTACTTCCTCCAGTGCATTCCTCTTTTCATAATCAATTTTCTCCCTTTCTAGCCTTGACACATGCTTCACTAAGACTTGATCCAAACTCTCAGATGCTGTAGCATTGTTACCATGCTTTCGCTGATCATGTGGCACATTGGTCAGTCCTTCCCCCAGTGCATTCCTCCTTTCATAATCGATTTTCTCCCTTTCTAGCCTTGACACATGCTTCACTAAGATCTCATCTAAACTCCCTGTCACAATTGTGCGGTCAACATTCTTCTGTGGATCTTTCTGCACATTGGTTTGTCCATGTTCGAGTGCTTTCTTCTTTTCCCTCTCCAATCTATGGATTGGCCTGATTAAGATCTTATCAAGGCCAACATCAAATGCATTGCCATCTTTAGTACAGCATTTAAGCCAGAAGTGGCAACAATAACTGCCAGAGAAGCAAGTTCATCTTCATGAAGAGCTTTTAGCCTTTCCAGCATAATGTTCACAAGATCATTGGATTGCTGAACGTTAGTATTGTCAAAGTCAGATGGAAAGATGCCTGTTCCCAAGGTTTCTTTATTGAATTTCAAATTCCTTTTGTCTTCACTGTTACAGTCCCCCTGATGCTGCTCATCTTCAGAATTTGCATCAATCTCAGTTACATCAGGATTTTGGCTAATTTTCCATAAAAGCTCCTTAAACTCTTCTTTGTTTGATGAAATAGAAGAATTCGCAAGTTGAATAAATGCCTTCTTAACTGCAGCGGCAACCTCCATATCAACCTCAAAACCAGTCTGAAAGGAAGCAGTGACCTTATGAGTTGATCGTCCCCCAGTCTGTGACGATGATTCCACCTCATACTGCTGACTTGAACAATCTGGTCTGTCGTACATCATTACGCCTATTACTCTAGCTTCTTCAAATGCTTCAGTTGCCCGAAACTTGGCCTTTTCCATAACTTCTTCAGCGTCCTTCTTTTGGATCCTGTTGAAAAGTAGAATAAAAATCAGAACAAATGAGTGTATCAAGGAAAATACACACAAGGCTGGACATGATGGAATAAGATAACCATGATTTTCACCTTGCTGCATGAAGAATTCTGCACCACGATGCTTCAACCATGGCAGCTTTGCGAGCTTCCATTGCCTTTCTGGCTGCTTCTCTAGCTGCAATTTTCTCCCTTGCCATTCGCGTGTAGTGAGGATTGGCACTTCCCAAAGTCTCATCAAGAGATGCAGTCATGCCATTGCTCTCCTAAAATACACAAAAAGAAACAACTTCAATTCTGATGCTACAATAATTTTCAATGGTAATTTCCCTCTTCTTATCAAGAGAACAAAATCGAGGCAGCAATAAATTTGATACTGAAAGTTCAGATCTATTCAATGCTCAGAGGGCACGATCATTATTTAAAAATTCCATGCTGAAATAGTTCTTGGAAGAGTGTTGGCACATTTGTTACAATTCATGAAGTACCTGAAGACGCTTTATCTTTCTCTTCAAGTATGGTTCAGTCTTCTTCCGAGGGAACCAATCTATAGGGGAACCACTTTTACGATTAATTGACTTCTTGAATTGGGATGCTGATTTATTTACAGAATTCAAAA]
[-] EMBL AU093930 [TTTTTGTTTGGCAGAAAGTTGCTGATCTTCTTGTTTTCTGATATGAAGATCCCAGAATTAACGTTCACTTTACCAGTAGTAGAATATACAGGCATAGAGAATATGACGACGGCATGCTCTCTCCTCCGAGCTGGAAGTGTATATGTGAAACAACAAACAGTACATACAGTAAAATCCAGTAGAAATATTGTGAGCTATGGTTATAGCTCATTTGCAGCACACATCTGCTTCTGTTCCTCCTCAGCTTTTCTCCACGCAACCTTGTCCTTCTCAATTTTCGAGAGATGAGGCTTCATGGAGTTCCCTAGACCCACTCCTCCCCATGCATCCATAAGTTCCTTCTCACGTGCCCTTCTGCGCTCTTGGACTGGATTAAAGCTGCCTGTCAGTGTTTCTTCAGCAGCAGAAGAAGCCAGCTTGGCTTGCTCAAGCTTCATGGAACGCTTGACAAGGATGTCAGACAGATCTGCTTCTTCATTTGTGCATTTTGAGTCATTCTTCTTTAGAAAGATCATATCACCGCTCTTTCCATGCTCCATCTTCTCCTTTTCAAGTCTGGAGA CATGCTT AACTAAGATCTGATCTAAACTAT CAG ATGCT ATGTTAGTGTT ACTGGGGCCTTTCCTGATGG TCTGTTCACTGGGTCTTTC ]
[+] EMBL AK064243 [ TCATTCTTCTTTAGAAAGATCATATCACCGCTCTTTCCATGCTCCATCTTCTCCTTTTCAAGTCTGGAGA CATGCTT AACTAAGATCTGATCTAAACTAT CAG ATGCT ATGTTAGTGTT ACT GTGCCTTTCCTGATGGTTCTGTTCACTGGTTCTTTCTCCCAATGTATTCCTCTTTGCATATTCAACTTTCTCCCTTTCCAAACGACTGACATGCTTAACTAGGACTTGATCCAAACTCTCCGATGCTGTAGCATTGTTATCATGCTTTCGCTGATCATGTGCCACATTGGTCAGTACTTCCTCCAGTGCATTCCTCTTTTCATAATCAATTTTCTCCCTTTCTAGCCTTGACACATGCTTCACTAAGACTTGATCCAAACTCTCAGATGCTGTAGCATTGTTACCATGCTTTCGCTGATCATGTGGCACATTGGTCAGTCCTTCCCCCAGTGCATTCCTCCTTTCATAATCGATTTTCTCCCTTTCTAGCCTTGACACATGCTTCACTAAGATCTCATCTAAACTCCCTGTCACAATTGTGCGGTCAACATTCTTCTGTGGATCTTTCTGCACATTGGTTTGTCCATGTTCGAGTGCTTTCTTCTTTTCCCTCTCCAATCTATGGATTGGCCTGATTAAGATCTTATCAAGGCCAACATCAAATGCATTGCCATCTTTAGTACAGCATTTAAGCCAGAAGTGGCAACAATAACTGCCAGAGAAGCAAGTTCATCTTCATGAAGAGCTTTTAGCCTTTCCAGCATAATGTTCACAAGATCATTGGATTGCTGAACGTTAGTATTGTCAAAGTCAGATGGAAAGATGCCTGTTCCCAAGGTTTCTTTATTGAATTTCAAATTCCTTTTGTCTTCACTGTTACAGTCCCCCTGATGCTGCTCATCTTCAGAATTTGCATCAATCTCAGTTACATCAGGATTTTGGCTAATTTTCCATAAAAGCTCCTTAAACTCTTCTTTGTTTGATGAAATAGAAGAATTCGCAAGTTGAATAAATGCCTTCTTAACTGCAGCGGCAACCTCCATATCAACCTCAAAACCAGTCTGAAAGGAAGCAGTGACCTTATGAGTTGATCGTCCCCCAGTCTGTGACGATGATTCCACCTCATACTGCTGACTTGAACAATCTGGTCTGTCGTACATCATTACGCCTATTACTCTAGCTTCTTCAAATGCTTCAGTTGCCCGAAACTTGGCCTTTTCCATAACTTCTTCAGCGTCCTTCTTTTGGATCCTGTTGAAAAGTAGAATAAAAATCAGAACAAATGAGTGTATCAAGGAAAATACACACAAGGCTGGACATGATGGAATAAGATAACCATGATTTTCACCTTGCTGCATGAAGAATTCTGCACCACGATGCTTCAACCATGGCAGCTTTGCGAGCTTCCATTGCCTTTCTGGCTGCTTCTCTAGCTGCAATTTTCTCCCTTGCCATTCGCGTGTAGTGAGGATTGGCACTTCCCAAAGTCTCATCAAGAGATGCAGTCATGCCATTGCTCTCCTAAAATACACAAAAAGAAACAACTTCAATTCTGATGCTACAATAATTTTCAATGGTAATTTCCCTCTTCTTATCAAGAGAACAAAATCGAGGCAGCAATAAATTTGATACTGAAAGTTCAGATCTATTCAATGCTCAGAGGGCACGATCATTATTTAAAAATTCCATGCTGAAATAGTTCTTGGAAGAGTGTTGGCACATTTGTTACAATTCATGAAGTACCTGAAGACGCTTTATCTTTCTCTTCAAGTATGGTTCAGTCTTCTTCCGAGGGAACCAATCTATAGGGGAACCACTTTTACGATTAATTGACTTCTTGAATTGGGATGCTGATTTATTTACAGAATTCAAAA]
[-] EMBL C74915 [ gtTCTGGAGATCATGCTTAAACTAAGATCTGATCTAAACTATCCAGNATGCTAATGTTAGTGTTNACT GTGCCTTTCCTGATGGTTCTGTTCACTGGTTCTTTCTCCCAATGTATTCCTCTTTGCATATTCAACTTTCTCCCTTTCCAAACGACTGACATGCTTAACTAGGACTTGATCCAAACTCTCCGATGCTGTAGCATTGTTATCATGCTTTCGCTGATCATGTGCCACATTGGTCAGTACTTCCTCCAGTGCATTCCTCTTTTCATAATCAATTTTCTCCCTTTCTAGCCTTGACACATGCTTCACTAAGACTTGATCCAAACTCTCAGATGCTGTA ]
consensusID : consensus_7326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[CCTTGTCACTTTGAAGTACAGCATTTAACCNAGAAGTGGCAACAATAACTGCCAGAGAAGCAAGTTCATCCTCATGAAAGAGCTTTTAGCCTTTCCAGCATAATGTTCACAAGATCATTGGATTGCTGAACGTTAGTATTGTCAAAGTCAGATGGAAAGATGCCTGTTCCCAAGGTTTCTTTATTGAATTTCAAATTCTCTTGAGCTTGAACTCTTGCGGGCCTTCCGCCGCTGCGGTTGGGGGAGCCCTTCTGCGGAGGGAGGGCGTCGGCGAGGCGCAGCTTCGGGCCTCCACGCCGTCGCCGACCTGCTCCGGCGGAGTAGGATGAGGAGGAGGAGGCGAGGCCACCATGGCGAGCCGCGTGGAGAGGGGCGAGGTGGTGGCNAGGAGGAGNNGGAGGAGGAGGACGGCGTGTGGATTCGAACGGAATTGGAGGGGGGAGAGA]
[-] EMBL C72271 [CCTTGTCACTTTGAAGTACAGCATTTAACCNAGAAGTGGCAACAATAACTGCCAGAGAAGCAAGTTCATCCTCATGAAAGAGCTTTTAGCCTTTCCAGCATAATGTTCACAAGATCATTGGATTGCTGAACGTTAGTATTGTCAAAGTCAGATGGAAAGATGCCTGTTCCCAAGGTTTCTTTATTGAATTTCAAATTCTCTTGAGCTTGAACTCTTGCGGGCCTTCCGCCGCTGCGGTTGGGGGAGCCCTTCTGCGGAGGGAGGGCGTCGGCGAGGCGCAGCTTCGGGCCTCCACGCCGTCGCCGACCTGCTCCGGCGGAGTAGGATGAGGAGGAGGAGGCGAGGCCACCATGGCGAGCCGCGTGGAGAGGGGCGAGGTGGTGGCNAGGAGGAGNNGGAGGAGGAGGACGGCGTGTGGATTCGAACGGAATTGGAGGGGGGAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7326#0 TTTTTGTTTGGCAGAAAGTTGCTGATCTTCTTGTTTTCTGATATGAAGATCCCAGAATTA 60
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 ACGTTCACTTTACCAGTAGTAGAATATACAGGCATAGAGAATATGACGACGGCATGCTCT 120
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 CTCCTCCGAGCTGGAAGTGTATATGTGAAACAACAAACAGTACATACAGTAAAATCCAGT 180
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 AGAAATATTGTGAGCTATGGTTATAGCTCATTTGCAGCACACATCTGCTTCTGTTCCTCC 240
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TCAGCTTTTCTCCACGCAACCTTGTCCTTCTCAATTTTCGAGAGATGAGGCTTCATGGAG 300
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TTCCCTAGACCCACTCCTCCCCATGCATCCATAAGTTCCTTCTCACGTGCCCTTCTGCGC 360
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TCTTGGACTGGATTAAAGCTGCCTGTCAGTGTTTCTTCAGCAGCAGAAGAAGCCAGCTTG 420
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 GCTTGCTCAAGCTTCATGGAACGCTTGACAAGGATGTCAGACAGATCTGCTTCTTCATTT 480
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 GTGCATTTTGAGTCATTCTTCTTTAGAAAGATCATATCACCGCTCTTTCCATGCTCCATC 540
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TTCTCCTTTTCAAGTCTGGAGACATGCTTAACTAAGATCTGATCTAAACTATCAGATGCT 600
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 ATGTTAGTGTTACTGTGCCTTTCCTGATGGTTCTGTTCACTGGTTCTTTCTCCCAATGTA 660
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TTCCTCTTTGCATATTCAACTTTCTCCCTTTCCAAACGACTGACATGCTTAACTAGGACT 720
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TGATCCAAACTCTCCGATGCTGTAGCATTGTTATCATGCTTTCGCTGATCATGTGCCACA 780
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TTGGTCAGTACTTCCTCCAGTGCATTCCTCTTTTCATAATCAATTTTCTCCCTTTCTAGC 840
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 CTTGACACATGCTTCACTAAGACTTGATCCAAACTCTCAGATGCTGTAGCATTGTTACCA 900
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TGCTTTCGCTGATCATGTGGCACATTGGTCAGTCCTTCCCCCAGTGCATTCCTCCTTTCA 960
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TAATCGATTTTCTCCCTTTCTAGCCTTGACACATGCTTCACTAAGATCTCATCTAAACTC 1020
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 CCTGTCACAATTGTGCGGTCAACATTCTTCTGTGGATCTTTCTGCACATTGGTTTGTCCA 1080
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TGTTCGAGTGCTTTCTTCTTTTCCCTCTCCAATCTATGGATTGGCCTGATTAAGATCTTA 1140
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TCAAGGCCAACATCAAATGCATTGCCATCTTTA-GTACAGCATTTAAGCCAGAAGTGGCA 1199
consensus_7326#1 -------------------CCTTGTCACTTTGAAGTACAGCATTTAACCNAGAAGTGGCA 41
* *** ** ** * ************* * **********
consensus_7326#0 ACAATAACTGCCAGAGAAGCAAGTTCATCTTCATGAA-GAGCTTTTAGCCTTTCCAGCAT 1258
consensus_7326#1 ACAATAACTGCCAGAGAAGCAAGTTCATCCTCATGAAAGAGCTTTTAGCCTTTCCAGCAT 101
***************************** ******* **********************
consensus_7326#0 AATGTTCACAAGATCATTGGATTGCTGAACGTTAGTATTGTCAAAGTCAGATGGAAAGAT 1318
consensus_7326#1 AATGTTCACAAGATCATTGGATTGCTGAACGTTAGTATTGTCAAAGTCAGATGGAAAGAT 161
************************************************************
consensus_7326#0 GCCTGTTCCCAAGGTTTCTTTATTGAATTTCAAATTCCTTTTGTCTTCA-CTGTTACAGT 1377
consensus_7326#1 GCCTGTTCCCAAGGTTTCTTTATTGAATTTCAAATTCTCTTGAGCTTGAACTCTTGCGGG 221
************************************* ** *** * ** ** * *
consensus_7326#0 CCCCCTGATGCTGCTCATCTTCAGAATTTGCATCAATCTCAGTTACATCAGGATTTTGGC 1437
consensus_7326#1 CCTTCCGCCGCTGCG-GTTGGGGGAGCCC--------TTCTGCGGAGGGAGGGCGTCGGC 272
** * * ***** * ** ** * *** * ***
consensus_7326#0 TAATTTTC-CATAAAAGCTCCTTAAACTCTTCTTTGTTTGATGAAATAGAAGAATTCGCA 1496
consensus_7326#1 GAGGCGCAGCTTCGGGCCTCCACGCCGTCGCCGACCTGCTCCGGCGGAGTAGGATGAGGA 332
* * * **** ** * * * ** ** ** * *
consensus_7326#0 AGTTGAATAAATGCCTTCTTAACTGCAGCGGCAACCTCCATATCAACCTCAAAACCAGTC 1556
consensus_7326#1 GGAGGAGGCGAGGCCACCATGGC--GAGCCGCGTGGAGAGGGGCGAGGTGGTGGCNAGGA 390
* ** * *** * * * *** ** * * * * **
consensus_7326#0 TGAAAGGAAGCAGTGACCTTATGAGTTGATCGTCCCCCAGTCTGTGACGATGATTCCACC 1616
consensus_7326#1 GGAGNNGGAGGAGGAGGACGGCGTGTGGATTCGAACGGAATTGGAGGGGGGAGAGA---- 446
** * ** ** * ** *** * * * * * *
consensus_7326#0 TCATACTGCTGACTTGAACAATCTGGTCTGTCGTACATCATTACGCCTATTACTCTAGCT 1676
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TCTTCAAATGCTTCAGTTGCCCGAAACTTGGCCTTTTCCATAACTTCTTCAGCGTCCTTC 1736
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TTTTGGATCCTGTTGAAAAGTAGAATAAAAATCAGAACAAATGAGTGTATCAAGGAAAAT 1796
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 ACACACAAGGCTGGACATGATGGAATAAGATAACCATGATTTTCACCTTGCTGCATGAAG 1856
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 AATTCTGCACCACGATGCTTCAACCATGGCAGCTTTGCGAGCTTCCATTGCCTTTCTGGC 1916
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TGCTTCTCTAGCTGCAATTTTCTCCCTTGCCATTCGCGTGTAGTGAGGATTGGCACTTCC 1976
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 CAAAGTCTCATCAAGAGATGCAGTCATGCCATTGCTCTCCTAAAATACACAAAAAGAAAC 2036
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 AACTTCAATTCTGATGCTACAATAATTTTCAATGGTAATTTCCCTCTTCTTATCAAGAGA 2096
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 ACAAAATCGAGGCAGCAATAAATTTGATACTGAAAGTTCAGATCTATTCAATGCTCAGAG 2156
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 GGCACGATCATTATTTAAAAATTCCATGCTGAAATAGTTCTTGGAAGAGTGTTGGCACAT 2216
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TTGTTACAATTCATGAAGTACCTGAAGACGCTTTATCTTTCTCTTCAAGTATGGTTCAGT 2276
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 CTTCTTCCGAGGGAACCAATCTATAGGGGAACCACTTTTACGATTAATTGACTTCTTGAA 2336
consensus_7326#1 ------------------------------------------------------------
consensus_7326#0 TTGGGATGCTGATTTATTTACAGAATTCAAAA 2368
consensus_7326#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||