These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1347 fasta sequence [TAGTTTTTTTTTCTCGCCGGCGACAGTGAGCGCCCTTCTTCTCTCGTCGCCCGTGCAGCGGAGGTCGCCCGCGCCGCCGCAAGTTCCTTCCAGGCGGGGAGGTAACATGCTACACAACACCGCCCCCAAAACATTTTCCCCTGTTGGATGGCGACTTGGGCGCTCCATCGACTACTGGATGGCACCATGCGGTTGAGGCTGCGACACCCCCCACCCCCACACCCCCCCGCCCTGTGGCACCGTCGGCTGCCCCTTTGTCGCCGACATCCATCCCATCGCCGGATCTAGGAGAGCTTCGCCCGAATTCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGAGCAGCGGTACCAACGACATTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGAGGCTGCGGATCAGGGGTCCGATGGGTCGTTCTCCCTCCTCCCTAAAGCGGTGGCGAAGGATGTCAGTAAATTGTTGTTGGCGTTGTGCGCGGCAGGTCAGCGCCGCCAAGGAATACAGGAGGTCCGTGTAGCGGCTGTAGTCAATTGAAATCTATTTCAGGTACAGCTCGTTAGTTCCTATCAACTAAGGCTGTGTTTAGATCCAAAGTTTGGATCCAAACTTCAGTCCTTTTTCATCACATCAACCTGTCATACACACAACTTTTCAATCACATCATCTCCAATTTCAACCAAAATCCAGCCTAAGTAGTAGCGTTATATGGTATCAGTAGTTTTTTTATCAGCCTGTATTGGATTGCACCGTCGTTTTGATTTTGGATGAGCTATGTGCCTGTGTTGGCTGTGGGGATGCGGTTTTGTTAAGATTGGGTAGTAACAACTGATTAATGCCTGCCGACGGAAGGGCATGCATTTCAATTGGCAGCCAACGGGATGAAGTTAATATATGTCAGGAGCACAATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGTGACCTGGGAAACATTGTCGCTAGCGCCGGAGCGGCCATGCTTGATCCTGGGCTGCCCATCCTGATTCCTAATGCTACCGCCACACAGTCCTGTTCTACGCTGGTTGGTTGGCGAGCCAGCCGCCTCCACTACAACATTCGTCCATCAAAGATGGATCCCGCGGTGAAGAGGAGGATATGCTGATCTGAATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAACTTTTTTACTTTTGAGTTTAAGCATATCATTTGTTTATTGTATA--GTGTGTCTGAATGTAACAGAACCCGTGTGTAAAAGAAAATATTG-TCAATAGAGGCTACAATGTTAACTGGTAGCTTGGTTTTCTAGTGAATACAGTTAATTGGTAAAAAAAAAA] [+] EMBL AK106625 [TAGTTTTTTTTTCTCGCCGGCGACAGTGAGCGCCCTTCTTCTCTCGTCGCCCGTGCAGCGGAGGTCGCCCGCGCCGCCGCAAGTTCCTTCCAGGCGGGGAGGTAACATGCTACACAACACCGCCCCCAAAACATTTTCCCCTGTTGGATGGCGACTTGGGCGCTCCATCGACTACTGGATGGCACCATGCGGTTGAGGCTGCGACACCCCCCACCCCCACACCCCCCCGCCCTGTGGCACCGTCGGCTGCCCCTTTGTCGCCGACATCCATCCCATCGCCGGATCTAGGAGAGCTTCGCCCGAATTCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGAGCAGCGGTACCAACGACATTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGAGGCTGCGGATCAGGGGTCCGATGGGTCGTTCTCCCTCCTCCCTAAAGCGGTGGCGAAGGATGTCAGTAAATTGTTGTTGGCGTTGTGCGCGGCAGGTCAGCGCCGCCAAGGAATACAGGAGGTCCGTGTAGCGGCTGTAGTCAATTGAAATCTATTTCAGGTACAGCTCGTTAGTTCCTATCAACTAAGGCTGTGTTTAGATCCAAAGTTTGGATCCAAACTTCAGTCCTTTTTCATCACATCAACCTGTCATACACACAACTTTTCAATCACATCATCTCCAATTTCAACCAAAATCCAGCCTAAGTAGTAGCGTTATATGGTATCAGTAGTTTTTTTATCAGCCTGTATTGGATTGCACCGTCGTTTTGATTTTGGATGAGCTATGTGCCTGTGTTGGCTGTGGGGATGCGGTTTTGTTAAGATTGGGTAGTAACAACTGATTAATGCCTGCCGACGGAAGGGCATGCATTTCAATTGGCAGCCAACGGGATGAAGTTAATATATGTCAGGAGCACAATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGTGACCTGGGAAACATTGTCGCTAGCGCCGGAGCGGCCATGCTTGATCCTGGGCTGCCCATCCTGATTCCTAATGCTACCGCCACACAGTCCTGTTCTACGCTGGTTGGTTGGCGAGCCAGCCGCCTCCACTACAACATTCGTCCATCAAAGATGGATCCCGCGGTGAAGAGGAGGATATGCTGATCTGAATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAACTTTTTTACTTTTGAGTTTAAGCATATCATTTGTTTATTGTATA GTGTGTCTGAATGTAACAGAACCCGTGTGTAAAAGAAAATATTG TCAATAGAGGCTACAATGTTAACTGGTAGCTTGGTTTTC ] [+] EMBL BM420754 [ TGCCAGGAACAC ATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGTGACATGGGAAACATTGTCGCTAGCGCCGGAGC GCCATGCTTGATCCTGGGCTGCCCATCCTGATTCCTAATGCTACCGCCACACAGTCCTGTTCTACGCTGGTTGGTTGGCGAGCCAGCCGCCTCCACTACAACATTCGTCCATCAAAGATGGATCCCGTGGTGAAGAGGAGGATCTGCTGATCTGAATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCC TNGTAATTTTTTTACTTTTGAGTTTAACCATGTAATTTGTTTATTGTATAGTGTGTGTCTGAATGTAAC GAACCCGTGTGTAAAAGAAAATATTGTTAAATAGA GCTACAATGTTAACTGNTAGCTT GTTGTCTAGTGAATACAGTTAATTGGTAAAAAAAAAA] consensusID : consensus_7336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [TCTTCTCTCGCCGCCCGTGCAGCGGGGGTCGCCCGCGCCGCCGCAAGTTCCTTCCAGGCGGGGATAGGCGGCTGCGAGGTAACGTGCTACACAACACCGCCCCAAAACATTTTCCCCTGTTGGACGGCGACTTGGGCGCTCCATCGACTGCTGGATGGCACCATGTGGTTGAGGCCCGTGGCACCGTCGGCTGCCCCTCTGTCGCCGACATCCATCCCATCGCCGGATCTAGGAGAGCTTCGCCCGAATCCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGAGCAGCGGTACCAACGACATTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGGAGGCTACGGATCTGGGGGTCCGATGGGTCGTTCTCCCTCCTCCCTAAAGNGGTGGCGAAGGATGTCAGTAAATTGTCGTTGGCGTCATGCGCGGCAGGTCAGCGCCGCCAAGAAATACAGGAGGTCCGTGTAGCGGTTGTAGTCAATTGAAATCTATTTCAGGAGCACAATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGGTGACCTGGGGAAANATTGTCACTAGCGCCGGGAGCGGGCATGCTTGATCCTGGGNTGCCCATCCTGATTCCTAANTGCTACCGGCACACAGTCCTGTTCTAAACTGGTTGGGTTGGCGAGCAACCGCCTT] [+] EMBL AU031528 [TCTTCTCTCGCCGCCCGTGCAGCGGGGGTCGCCCGCGCCGCCGCAAGTTCCTTCCAGGCGGGGATAGGCGGCTGCGAGGTAACGTGCTACACAACACCGCCCCAAAACATTTTCCCCTGTTGGACGGCGACTTGGGCGCTCCATCGACTGCTGGATGGCACCATGTGGTTGAGGCCCGTGGCACCGTCGGCTGCCCCTCTGTCGCCGACATCCATCCCATCGCCGGATCTAGGAGAGCTTCGCCCGAATCCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGAGCAGCGGTACCAACGACATTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGGAGGCTACGGATCTGGGGGTCCGATGGGTCGTTCTCCCTCCTCCCTAAAGNGGTGGCGAAGGATGTCAGTAAATTGTCGTTGGCGTCATGCGCGGCAGGTCAGCGCCGCCAAGAAATACAGGAGGTCCGTGTAGCGGTTGTAGTCAATTGAAATCTATTTCAGGAGCACAATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGGTGACCTGGGGAAANATTGTCACTAGCGCCGGGAGCGGGCATGCTTGATCCTGGGNTGCCCATCCTGATTCCTAANTGCTACCGGCACACAGTCCTGTTCTAAACTGGTTGGGTTGGCGAGCAACCGCCTT] consensusID : consensus_7336#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [TCAATTGAAATCTATTTCAGGAGCACAATGTACCCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGTGACCTGGGAAANATTGTCACTAGCNCCGGAGCGGCCATGNTTGATCCTGGGCTNCCCATCCTGATNCCTAATGCTACCGCCACACAGTCCTGTTCTAAGCTGGTTGGTTGGCGAGCCAGCCGCCTCCACTACAACATTCGTCCATCAAAGACGATGGATCCCGCGGTGAAGAGGAGGATCTGCTGATCTGAATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAACTTTTTTACTTTTGAGTTTAAGCATGTAATTTGTTTATTGTATAGTGTGTCCAGTGGCGAACCCAGAACAAAAATTACTGGGGTCCAATATATACTAATTATCTAATTATTAACTAATAAAAA] [+] EMBL AU031529 [TCAATTGAAATCTATTTCAGGAGCACAATGTACCCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGTGACCTGGGAAANATTGTCACTAGCNCCGGAGCGGCCATGNTTGATCCTGGGCTNCCCATCCTGATNCCTAATGCTACCGCCACACAGTCCTGTTCTAAGCTGGTTGGTTGGCGAGCCAGCCGCCTCCACTACAACATTCGTCCATCAAAGACGATGGATCCCGCGGTGAAGAGGAGGATCTGCTGATCTGAATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAACTTTTTTACTTTTGAGTTTAAGCATGTAATTTGTTTATTGTATAGTGTGTCCAGTGGCGAACCCAGAACAAAAATTACTGGGGTCCAATATATACTAATTATCTAATTATTAACTAATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7336#0 TAGTTTTTTTTTCTCGCCGGCGACAGTGAGCGCCCTTCTTCTCTCGTCGCCCGTGCAGCG 60 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 GAGGTCGCCCGCGCCGCCGCAAGTTCCTTCCAGGCGGGGAGGTAACATGCTACACAACAC 120 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 CGCCCCCAAAACATTTTCCCCTGTTGGATGGCGACTTGGGCGCTCCATCGACTACTGGAT 180 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 GGCACCATGCGGTTGAGGCTGCGACACCCCCCACCCCCACACCCCCCCGCCCTGTGGCAC 240 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 CGTCGGCTGCCCCTTTGTCGCCGACATCCATCCCATCGCCGGATCTAGGAGAGCTTCGCC 300 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 CGAATTCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGAGCAGCGGTACCAACGACA 360 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 TTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGAGGCTGCGGATCAGGGGTCCGATGGG 420 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 TCGTTCTCCCTCCTCCCTAAAGCGGTGGCGAAGGATGTCAGTAAATTGTTGTTGGCGTTG 480 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 TGCGCGGCAGGTCAGCGCCGCCAAGGAATACAGGAGGTCCGTGTAGCGGCTGTAGTCAAT 540 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 TGAAATCTATTTCAGGTACAGCTCGTTAGTTCCTATCAACTAAGGCTGTGTTTAGATCCA 600 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 AAGTTTGGATCCAAACTTCAGTCCTTTTTCATCACATCAACCTGTCATACACACAACTTT 660 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 TCAATCACATCATCTCCAATTTCAACCAAAATCCAGCCTAAGTAGTAGCGTTATATGGTA 720 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 TCAGTAGTTTTTTTATCAGCCTGTATTGGATTGCACCGTCGTTTTGATTTTGGATGAGCT 780 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 ------------------------------------------------------------ consensus_7336#0 ATGTGCCTGTGTTGGCTGTGGGGATGCGGTTTTGTTAAGATTGGGTAGTAACAACTGATT 840 consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 -------TCTTCTCTCGCCGCCCGTGCAGCGGGGGTCGCCCGCGCCGCCGCAAGTTCCTT 53 consensus_7336#0 AATGCCTGCCGACGGAAGGGCATGCATTTCAATTGGCAGCCAACGGGATGAAGTTAA-TA 899 consensus_7336#2 ------------------------------------------------TCAATTGAAATC 12 consensus_7336#1 CCAGGCGGGGATAGGCGGCTGCGAGGTAACGTGCTACACAACACCGCCCCAA--AACATT 111 ** * * consensus_7336#0 TATGTCAGGAGCACAATGTAACCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGT- 958 consensus_7336#2 TATTTCAGGAGCACAATGTACCCCGGTGGACTCGAAGATGATGAAATGCATCATGCGGT- 71 consensus_7336#1 TTCCCCTGTTGGACGGCG-ACTTGGGCGCTCCATCGACTGCTGGATGGCACCATGTGGTT 170 * * * * ** * * ** * * ** ** * *** **** *** consensus_7336#0 GACCTGGGAAACATTGTCGCTAGCGCCGGAGCGGCCATGCTTGATCCTGGGCTGCCCATC 1018 consensus_7336#2 GACCTGGGAAANATTGTCACTAGCNCCGGAGCGGCCATGNTTGATCCTGGGCTNCCCATC 131 consensus_7336#1 GAGGCCCGTGGCACCGTCGGCTGCCCCTCTGTCGCCGACATCCATCCCA--TCGCCGGAT 228 ** * * *** ** ** * *** * **** ** consensus_7336#0 CTGATTCCTAATGCTACCGCCACACAGTCCTGTTCTACGCTGGTTGGT--TGGCGAGCCA 1076 consensus_7336#2 CTGATNCCTAATGCTACCGCCACACAGTCCTGTTCTAAGCTGGTTGGT--TGGCGAGCCA 189 consensus_7336#1 CTAGGAG--AGCTTCGCCCGAATCCTCTTCTGATTCTTGCGTGTCGGTGGTGGGTGGAGA 286 ** * ** * * * *** * ** ** *** *** * * consensus_7336#0 GCCGCCTCCACTACAACATTCGTCCATCAAAGA-----TGGATCCCGCGGTGAAGAGGA- 1130 consensus_7336#2 GCCGCCTCCACTACAACATTCGTCCATCAAAGAC--GATGGATCCCGCGGTGAAGAGGA- 246 consensus_7336#1 GCAGCGGTACCAACGACATTTGAAGCACAGAGGGTGGCAGGATTCGGAGAGGGAGGCTAC 346 ** ** * ** ***** * ** ** **** * * * * ** * consensus_7336#0 GGATATGCTGATCTGA-ATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAA 1189 consensus_7336#2 GGATCTGCTGATCTGA-ATTTCTTTGATGATTTTTGTTGGAGTGTTTATATCCTTTGTAA 305 consensus_7336#1 GGATCTGGGGGTCCGATGGGTCGTTCTCCCTCCTCCCTAAAGNGGTGGCGAAGGATGTCA 406 **** ** * ** ** ** ** * * * ** * * *** * consensus_7336#0 CTTTTTTACTTTTGAGTTTAAGCATATCATTTGTTTATTG--------TATAGTGTGTCT 1241 consensus_7336#2 CTTTTTTACTTTTGAGTTTAAGCATGTAATTTGTTTATTG--------TATAGTGTGTCC 357 consensus_7336#1 GTAAATTGTCGTTGGCGTCATGCGCGGCAGGTCAGCGCCGCCAAGAAATACAGGAGGTCC 466 * ** *** * * ** * * * ** ** *** consensus_7336#0 GAATGTAACAGAACCCGTGTGTAAAAGAAAATATTGTCAATAGAGGCTACAATGTTAACT 1301 consensus_7336#2 A---GTGGCGAACCCAG-----AACAAAAATTACTG--------GGGTCCAATATATACT 401 consensus_7336#1 G--TGTAGCGGTTGTAGTC--AATTGAAATCTATTTC-----AGGAGCACAATGTAACCC 517 ** * * * ** ** * * **** * * consensus_7336#0 GGTAGCTT----GGTTTTCTAGTGAATACAGTTAATTGGTAAAAAAAAAA---------- 1347 consensus_7336#2 AATTATCT----AATTAT-TAACTAATAAAAA---------------------------- 428 consensus_7336#1 GGTGGACTCGAAGATGATGAAATGCATCATGCGGGTGACCTGGGGAAANATTGTCACTAG 577 * * * * * ** consensus_7336#0 ------------------------------------------------------------ consensus_7336#2 ------------------------------------------------------------ consensus_7336#1 CGCCGGGAGCGGGCATGCTTGATCCTGGGNTGCCCATCCTGATTCCTAANTGCTACCGGC 637 consensus_7336#0 --------------------------------------------- consensus_7336#2 --------------------------------------------- consensus_7336#1 ACACAGTCCTGTTCTAAACTGGTTGGGTTGGCGAGCAACCGCCTT 682 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||