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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1793 fasta sequence
[AGATGGATCCGCCCATGGCGCCAGCGCCGCCGCCCTCCACCCACTCCACCGCACCCTTCGCAACTCCGGAGGTGCGTTCTGTCGCCGCCAGACGCCCGCGGCCTGCGGCGGCGAGCATCTCCGCGCGCCTACGCGACGTGGCGAGGAGGAGGAAGGATAGGCCTCGTCGCTGCCGGGCACAGGTGGCTCCCCGCGGCGGCGACCGCATCAGCGCCCTCTCCGACGATGTGCTCCTCCTCATCCTGCGGCGGCTCGCCACCCGCGCCGCGCTCGCCACCGCTATGCTCTCCAAGCGCTGGGCCCGGCTCCTGCGCTGGCTTGACACCCTCGATTTCATGGTCGGTGAAATACTCCCGCCGCGCTACCGTAGGTGCATCCAACTCCACCAAGCGGCTGGTTTTGCTGCGTATCCCGTTGATGTCAAGGTTCTCGTTGCAAGTATCAAGCGACACGAGCGCCTTGCCATGCGAAACATAGCGGCCTCCATCAATAGCTTGTTAGACGCGGATGGCAGTGATGAATGTGCTGGCCAAGCTCGACGGAGGGCCCGTGTGCTGCGGGTGGAGTTCTTTGCGACTCACTACACCGATCTTATGAACCGATTGATCACCAAGGCATTGGATGCTTGGGAAGTCGAGGATCTTGAAGTTTTTGCTAAGCCTGCATATTGGTCTGAGTGGTCTCTGCCGCCGATTGTCCACAGATTTCCTCACCATGGTCTCTGCATTGAGCCCCACAAGTCCCGGCTGAGAAGCTTGAAGCTAGGTGGTTGTATCATTCCGCCATTGCAGGGGTTCCACGCTCTCACCAAAATGACCTTGCAAGACTTGCGAAACTCCGTGGCCAAAGCATCCTATGAAGATGTGTTTAAGTCATGCCCCCAGTTGCAAGTGCTACACCTCAAGTCATGCAGGTGGGCGGACCGGGGCATTCTGGTTATCGATTTCCCAAAGTCAGGGATTAAGCAGCTTATTGTGGAGTTTTGCAGCGCCATTGCACTACACTCTCTTGGGATGCTTGAGAGCATAGCTATAAGGGAGACTTGGGTCAGGTATAAGCATTGCTCCTTCTCGCATCTTATGCACATGAACCTTAACTTACGCCATGGTTACCGTAATCGTCTGCGTGACTTATGTATTGGTTGGGACTTGAACATCCAGCAGTTTCTTGGATTCACCAAGAACATAACCAACCTGGTTCTACGATTCACTGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCGTTGTTGCTGGCTAATCTCAGAAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGCCTCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATGACGATTCTTTTGATGAAATCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAGAGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACAGATTTACTTTGTTAACTTTGTGATGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAGAAATGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAGCCCAAATTCTGAACCAGTTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAGTTGTAGAGTGATCTGTTATGTTAATGTTTTACTTGTATACAAGGCTTTAAGTTATAAAGCATGCATCTGTTATGTTACTTGTATACAAGGC-TTTAAGTTATAAAGCAT-GCATC]
[+] EMBL AK072324 [AGATGGATCCGCCCATGGCGCCAGCGCCGCCGCCCTCCACCCACTCCACCGCACCCTTCGCAACTCCGGAGGTGCGTTCTGTCGCCGCCAGACGCCCGCGGCCTGCGGCGGCGAGCATCTCCGCGCGCCTACGCGACGTGGCGAGGAGGAGGAAGGATAGGCCTCGTCGCTGCCGGGCACAGGTGGCTCCCCGCGGCGGCGACCGCATCAGCGCCCTCTCCGACGATGTGCTCCTCCTCATCCTGCGGCGGCTCGCCACCCGCGCCGCGCTCGCCACCGCTATGCTCTCCAAGCGCTGGGCCCGGCTCCTGCGCTGGCTTGACACCCTCGATTTCATGGTCGGTGAAATACTCCCGCCGCGCTACCGTAGGTGCATCCAACTCCACCAAGCGGCTGGTTTTGCTGCGTATCCCGTTGATGTCAAGGTTCTCGTTGCAAGTATCAAGCGACACGAGCGCCTTGCCATGCGAAACATAGCGGCCTCCATCAATAGCTTGTTAGACGCGGATGGCAGTGATGAATGTGCTGGCCAAGCTCGACGGAGGGCCCGTGTGCTGCGGGTGGAGTTCTTTGCGACTCACTACACCGATCTTATGAACCGATTGATCACCAAGGCATTGGATGCTTGGGAAGTCGAGGATCTTGAAGTTTTTGCTAAGCCTGCATATTGGTCTGAGTGGTCTCTGCCGCCGATTGTCCACAGATTTCCTCACCATGGTCTCTGCATTGAGCCCCACAAGTCCCGGCTGAGAAGCTTGAAGCTAGGTGGTTGTATCATTCCGCCATTGCAGGGGTTCCACGCTCTCACCAAAATGACCTTGCAAGACTTGCGAAACTCCGTGGCCAAAGCATCCTATGAAGATGTGTTTAAGTCATGCCCCCAGTTGCAAGTGCTACACCTCAAGTCATGCAGGTGGGCGGACCGGGGCATTCTGGTTATCGATTTCCCAAAGTCAGGGATTAAGCAGCTTATTGTGGAGTTTTGCAGCGCCATTGCACTACACTCTCTTGGGATGCTTGAGAGCATAGCTATAAGGGAGACTTGGGTCAGGTATAAGCATTGCTCCTTCTCGCATCTTATGCACATGAACCTTAACTTACGCCATGGTTACCGTAATCGTCTGCGTGACTTATGTATTGGTTGGGACTTGAACATCCAGCAGTTTCTTGGATTCACCAAGAACATAACCAACCTGGTTCTACGATTCACTGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCGTTGTTGCTGGCTAATCTCAGAAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGCCTCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATGACGATTCTTTTGATGAAATCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAGAGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACAGATTTACTTTGTTAACTTTGTGATGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAGAAATGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAGCCCAAATTCTGAACCAGTTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAGTTGTAGAGTGATCTGTTATGTTAATGTTTTACTTGTATACAAGGCTTTAAGTTATAAAGCATGCATCTGTTATGTTACTTGTATACAAGGC TTTAAGTTATAAAGCAT GCAT ]
[+] EMBL AK099110 [AGATGGATCCGCCCATGGCGCCAGCGCCGCCGCCCTCCACCCACTCCACCGCACCCTTCGCAACTCCGGAGGTGCGTTCTGTCGCCGCCAGACGCCCGCGGCCTGCGGCGGCGAGCATCTCCGCGCGCCTACGCGACGTGGCGAGGAGGAGGAAGGATAGGCCTCGTCGCTGCCGGGCACAGGTGGCTCCCCGCGGCGGCGACCGCATCAGCGCCCTCTCCGACGATGTGCTCCTCCTCATCCTGCGGCGGCTCGCCACCCGCGCCGCGCTCGCCACCGCTATGCTCTCCAAGCGCTGGGCCCGGCTCCTGCGCTGGCTTGACACCCTCGATTTCATGGTCGGTGAAATACTCCCGCCGCGCTACCGTAGGTGCATCCAACTCCACCAAGCGGCTGGTTTTGCTGCGTATCCCGTTGATGTCAAGGTTCTCGTTGCAAGTATCAAGCGACACGAGCGCCTTGCCATGCGAAACATAGCGGCCTCCATCAATAGCTTGTTAGACGCGGATGGCAGTGATGAATGTGCTGGCCAAGCTCGACGGAGGGCCCGTGTGCTGCGGGTGGAGTTCTTTGCGACTCACTACACCGATCTTATGAACCGATTGATCACCAAGGCATTGGATGCTTGGGAAGTCGAGGATCTTGAAGTTTTTGCTAAGCCTGCATATTGGTCTGAGTGGTCTCTGCCGCCGATTGTCCACAGATTTCCTCACCATGGTCTCTGCATTGAGCCCCACAAGTCCCGGCTGAGAAGCTTGAAGCTAGGTGGTTGTATCATTCCGCCATTGCAGGGGTTCCACGCTCTCACCAAAATGACCTTGCAAGACTTGCGAAACTCCGTGGCCAAAGCATCCTATGAAGATGTGTTTAAGTCATGCCCCCAGTTGCAAGTGCTACACCTCAAGTCATGCAGGTGGGCGGACCGGGGCATTCTGGTTATCGATTTCCCAAAGTCAGGGATTAAGCAGCTTATTGTGGAGTTTTGCAGCGCCATTGCACTACACTCTCTTGGGATGCTTGAGAGCATAGCTATAAGGGAGACTTGGGTCAGGTATAAGCATTGCTCCTTCTCGCATCTTATGCACATGAACCTTAACTTACGCCATGGTTACCGTAATCGTCTGCGTGACTTATGTATTGGTTGGGACTTGAACATCCAGCAGTTTCTTGGATTCACCAAGAACATAACCAACCTGGTTCTACGATTCACTGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCGTTGTTGCTGGCTAATCTCAGAAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGCCTCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATGACGATTCTTTTGATGAAATCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAGAGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACAGATTTACTTTGTTAACTTTGTGATGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAGAAATGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAGCCCAAATTCTGAACCAGTTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAGTTGTAGAGTGATCTGTTATGTTAATGTTTTACTTGTATACAAGGCTTTAAGTTATAAAGCATGCATCTGTTATGTTACTTGTATACAAGGC TTTAAGTTATAAAGCAT GCAT ]
[+] EMBL CB096237 [ CAGGTATAAGCATTGCTCCTTCTCGCATCTTATGCACATGAACCTTAACTTACGCCATGGTTACCGTAATCGTCTGCGTGACTTATGTATTGGTTGGGACTTGAACATCCAGCAGTTTCTTGGATTCACCAAGAACATAACCAACCTGGTTCTACGATTCACTGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCGTTGTTGCTGGCTAATCTCAGAAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGCCTCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATGACGATTCTTTTGATGAAACCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAGAGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACAGATTTACTTTGTTAACTTTGTGATGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAGAAATGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAGCCCAAATTCTGAACCAGTTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAGTTGNAGAGNGATCTGGTATGGTAATGGTTTACTTGNATACAAGGCTTTAAGNTATNAAGCATGCATCTGGTATGGTACTTGNATACAAGGCTTTTAAGNTATNAAGCATGGCATC]
consensusID : consensus_7339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[GAGAGCATAGCTATAGGGAGACTTGGTCAGTTTCTTGATTCCCCAAGAACATAACCAACCTGGTTCTACGATTCACCGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCGTTGTTGCTGGCTAATCTCAGAAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGCCTCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATGACGATTCTTTTGATGAAATCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAGAGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACAGATTTACTTTGTTAACTTTGTGATGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAGAAATGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAGCCCAAATTTTGAACCAGTTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAGTTGTAGAGTGATCTGTTATGTTAATGTTTTACTTGTATACAAGGCTTTAAGTTATAAAGCATGCATCTGTTATGTTACTTGTATACAAGGCTTTAAGTTATAAAGCATGCATTTGATATGTCAAAAAAAAAA]
[-] EMBL CA759313 [GAGAGCATAGCTATAGGGAGACTTGGTCAGTTTCTTGATTCCCCAAGAACATAACCAACCTGGTTCTACGATTCACCGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCGTTGTTGCTGGCTAATCTCAGAAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGCCTCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATGACGATTCTTTTGATGAAATCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAGAGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACAGATTTACTTTGTTAACTTTGTGATGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAGAAATGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAGCCCAAATTTTGAACCAGTTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAGTTGTAGAGTGATCTGTTATGTTAATGTTTTACTTGTATACAAGGCTTTAAGTTATAAAGCATGCATCTGTTATGTTACTTGTATACAAGGCTTTAAGTTATAAAGCATGCATTTGATATGTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7339#0 AGATGGATCCGCCCATGGCGCCAGCGCCGCCGCCCTCCACCCACTCCACCGCACCCTTCG 60
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 CAACTCCGGAGGTGCGTTCTGTCGCCGCCAGACGCCCGCGGCCTGCGGCGGCGAGCATCT 120
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 CCGCGCGCCTACGCGACGTGGCGAGGAGGAGGAAGGATAGGCCTCGTCGCTGCCGGGCAC 180
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 AGGTGGCTCCCCGCGGCGGCGACCGCATCAGCGCCCTCTCCGACGATGTGCTCCTCCTCA 240
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 TCCTGCGGCGGCTCGCCACCCGCGCCGCGCTCGCCACCGCTATGCTCTCCAAGCGCTGGG 300
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 CCCGGCTCCTGCGCTGGCTTGACACCCTCGATTTCATGGTCGGTGAAATACTCCCGCCGC 360
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 GCTACCGTAGGTGCATCCAACTCCACCAAGCGGCTGGTTTTGCTGCGTATCCCGTTGATG 420
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 TCAAGGTTCTCGTTGCAAGTATCAAGCGACACGAGCGCCTTGCCATGCGAAACATAGCGG 480
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 CCTCCATCAATAGCTTGTTAGACGCGGATGGCAGTGATGAATGTGCTGGCCAAGCTCGAC 540
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 GGAGGGCCCGTGTGCTGCGGGTGGAGTTCTTTGCGACTCACTACACCGATCTTATGAACC 600
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 GATTGATCACCAAGGCATTGGATGCTTGGGAAGTCGAGGATCTTGAAGTTTTTGCTAAGC 660
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 CTGCATATTGGTCTGAGTGGTCTCTGCCGCCGATTGTCCACAGATTTCCTCACCATGGTC 720
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 TCTGCATTGAGCCCCACAAGTCCCGGCTGAGAAGCTTGAAGCTAGGTGGTTGTATCATTC 780
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 CGCCATTGCAGGGGTTCCACGCTCTCACCAAAATGACCTTGCAAGACTTGCGAAACTCCG 840
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 TGGCCAAAGCATCCTATGAAGATGTGTTTAAGTCATGCCCCCAGTTGCAAGTGCTACACC 900
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 TCAAGTCATGCAGGTGGGCGGACCGGGGCATTCTGGTTATCGATTTCCCAAAGTCAGGGA 960
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 TTAAGCAGCTTATTGTGGAGTTTTGCAGCGCCATTGCACTACACTCTCTTGGGATGCTTG 1020
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 AGAGCATAGCTATAAGGGAGACTTGGGTCAGGTATAAGCATTGCTCCTTCTCGCATCTTA 1080
consensus_7339#1 ------------------------------------------------------------
consensus_7339#0 TGCACATGAACCTTAACTTACGCCATGGTTACCGTAATCGTCTGCGTGACTTATGTATTG 1140
consensus_7339#1 --------------------------------------------GAGAGCATAGCTATAG 16
* ** *** *
consensus_7339#0 GTTGGGACTTGAACATCCAGCAGTTTCTTGGATTCACCAAGAACATAACCAACCTGGTTC 1200
consensus_7339#1 G--GAGACTTGGTCA-------GTTTCTTG-ATTCCCCAAGAACATAACCAACCTGGTTC 66
* * ****** ** ******** **** ************************
consensus_7339#0 TACGATTCACTGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCGTTGTTGCTGGCTA 1260
consensus_7339#1 TACGATTCACCGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCGTTGTTGCTGGCTA 126
********** *************************************************
consensus_7339#0 ATCTCAGAAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGCC 1320
consensus_7339#1 ATCTCAGAAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGCC 186
************************************************************
consensus_7339#0 TCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATG 1380
consensus_7339#1 TCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATG 246
************************************************************
consensus_7339#0 ACGATTCTTTTGATGAAATCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAG 1440
consensus_7339#1 ACGATTCTTTTGATGAAATCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAG 306
************************************************************
consensus_7339#0 AGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACAGATTTACTTTGTTAACTTTGTGA 1500
consensus_7339#1 AGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACAGATTTACTTTGTTAACTTTGTGA 366
************************************************************
consensus_7339#0 TGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAGAAA 1560
consensus_7339#1 TGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAGAAA 426
************************************************************
consensus_7339#0 TGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAG 1620
consensus_7339#1 TGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAG 486
************************************************************
consensus_7339#0 CCCAAATTCTGAACCAGTTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAG 1680
consensus_7339#1 CCCAAATTTTGAACCAGTTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAG 546
******** ***************************************************
consensus_7339#0 TTGTAGAGTGATCTGTTATGTTAATGTTTTACTTGTATACAAGGCTTTAAGTTATAAAGC 1740
consensus_7339#1 TTGTAGAGTGATCTGTTATGTTAATGTTTTACTTGTATACAAGGCTTTAAGTTATAAAGC 606
************************************************************
consensus_7339#0 ATGCATCTGTTATGTTACTTGTATACAAGGCTTTAAGTTATAAAGCATGCATC------- 1793
consensus_7339#1 ATGCATCTGTTATGTTACTTGTATACAAGGCTTTAAGTTATAAAGCATGCATTTGATATG 666
****************************************************
consensus_7339#0 ------------
consensus_7339#1 TCAAAAAAAAAA 678
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||