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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[GGAAATCTATAAAACTACCAGGAGATGACGAAGAAGAAATTCCTCGCATAAAGGCGGCTGATGACTCTCGTCCTTCCCCCTTAATCAAATGGTGGGACGAGAATTCTCAAGCTGGCGGCATCGTCATAAATCGTCAAAAAGATGAGGAAGTGCGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATGTAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTCAGCAAAACTAAACCGTGAACCATCGTGCAGAGAATCCATCTTCGCAATGAGGTCAAGACCGCAACTTTAGAAAAGCTGGTTGGTCATTTGGGAACTCTTGAAGCAGTTAGGGACCAGCTACATGAGGCCAAGGAGCTCGCCAAAAAGACAGAGAAGGAATTAAGGGACCAAATTGCTCAGCTCCAGGATTCAAACTTCGAGCTGAGTGGTTCATCAAAAGGTAACCTCTAGATCTGTCTCAGCAATTTATGCTGTCATAACTGTATCCTCAACCATTTGGAATTCAAACATCACAAGCCGCCAGGATGGCTCAAATGGAGAAACAAATTGAAGCCCTGGAAAGAGACAAGGTAGAACTGGCTGCGCAAAG]
[+] EMBL CB634120 [GGAAATCTATAAAACTACCAGGAGATGACGAAGAAGAAATTCCTCGCATAAAGGCGGCTGATGACTCTCGTCCTTCCCCCTTAATCAAATGGTGGGACGAGAATTCTCAAGCTGGCGGCATCGTCATAAATCGTCAAAAAGATGAGGAAGTGCGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATGTAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTCAGCAAAACTAAACCGTGAACCATCGTGCAGAGAATCCATCTTCGCAATGAGGTCAAGACCGCAACTTTAGAAAAGCTGGTTGGTCATTTGGGAACTCTTGAAGCAGTTAGGGACCAGCTACATGAGGCCAAGGAGCTCGCCAAAAAGACAGAGAAGGAATTAAGGGACCAAATTGCTCAGCTCCAGGATTCAAACTTCGAGCTGAGTGGTTCATCAAAAGGTAACCTCTAGATCTGTCTCAGCAATTTATGCTGTCATAACTGTATCCTCAACCATTTGGAATTCAAACATCACAAGCCGCCAGGATGGCTCAAATGGAGAAACAAATTGAAGCCCTGGAAAGAGACAAGGTAGAACTGGCTGCGCAAAG]
consensusID : consensus_734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[CAAGAATCACCTCACGCTCAGCCAGGAACATCCTCAGGTAACTCATTTTCTCTTGTGATGCCGATTTAAATAACTTCAGCTTATTCGTCTAATGTCTTGGAAATACATCAGAACCACCAGGCGACGACGAAGAAGAAATTCTCCGCATAAAGGCGGCTGATGACTCTCGTCCTCCTATCTTACTCAAATGGTGGGACGAGAACTCACAAGCTGCCGGCATCGTCATAAATCGTCAAAAAGAAGATGATGAAGTGTGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATGTAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTTAGCAGAACTAAACCATGAACCATCATGCAGAGAATCCATCTTCGCAATGAGGCCAAGACCGCAACTTTAGAAAAGCTGGTTCCTNNNTTGGGAACTCTTGANGCAGTTAGGGANNAGCTACANNNNNNNNNNNNGCTTGCCAAAANNNNNGAAANNNNNT]
[+] EMBL CF197093 [CAAGAATCACCTCACGCTCAGCCAGGAACATCCTCAGGTAACTCATTTTCTCTTGTGATGCCGATTTAAATAACTTCAGCTTATTCGTCTAATGTCTTGGAAATACATCAGAACCACCAGGCGACGACGAAGAAGAAATTCTCCGCATAAAGGCGGCTGATGACTCTCGTCCTCCTATCTTACTCAAATGGTGGGACGAGAACTCACAAGCTGCCGGCATCGTCATAAATCGTCAAAAAGAAGATGATGAAGTGTGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATGTAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTTAGCAGAACTAAACCATGAACCATCATGCAGAGAATCCATCTTCGCAATGAGGCCAAGACCGCAACTTTAGAAAAGCTGGTTCCTNNNTTGGGAACTCTTGANGCAGTTAGGGANNAGCTACANNNNNNNNNNNNGCTTGCCAAAANNNNNGAAANNNNNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_734#0 ------------------------------------------------------------
consensus_734#1 CAAGAATCACCTCACGCTCAGCCAGGAACATCCTCAGGTAACTCATTTTCTCTTGTGATG 60
consensus_734#0 --------------------------------------GGAAATCTAT-AAAACTACCAG 21
consensus_734#1 CCGATTTAAATAACTTCAGCTTATTCGTCTAATGTCTTGGAAATACATCAGAACCACCAG 120
****** ** * *** *****
consensus_734#0 GAGATGACGAAGAAGAAATTCCTCGCATAAAGGCGGCTGATGACTCTCGTCCTTCCCCCT 81
consensus_734#1 GCGACGACGAAGAAGAAATTCTCCGCATAAAGGCGGCTGATGACTCTCGTCCTCCTATCT 180
* ** **************** ****************************** * **
consensus_734#0 TAATCAAATGGTGGGACGAGAATTCTCAAGCTGGCGGCATCGTCATAAATCGTCAAAAAG 141
consensus_734#1 TACTCAAATGGTGGGACGAGAACTCACAAGCTGCCGGCATCGTCATAAATCGTCAAAAAG 240
** ******************* ** ******* **************************
consensus_734#0 A---TGAGGAAGTGCGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATG 198
consensus_734#1 AAGATGATGAAGTGTGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATG 300
* *** ****** *********************************************
consensus_734#0 TAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTCAGCAAAACTAAACCGT 258
consensus_734#1 TAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTTAGCAGAACTAAACCAT 360
******************************************* **** ********* *
consensus_734#0 GAACCATCGTGCAGAGAATCCATCTTCGCAATGAGGTCAAGACCGCAACTTTAGAAAAGC 318
consensus_734#1 GAACCATCATGCAGAGAATCCATCTTCGCAATGAGGCCAAGACCGCAACTTTAGAAAAGC 420
******** *************************** ***********************
consensus_734#0 TGGTTGGTCATTTGGGAACTCTTGAAGCAGTTAGGGACCAGCTACATGAGGCCAAGGAGC 378
consensus_734#1 TGGTTCCTNNNTTGGGAACTCTTGANGCAGTTAGGGANNAGCTACANNNNNNNNNNNNGC 480
***** * ************** *********** ******* **
consensus_734#0 TCGCCAAAAAGACAGAGAAGGAATTAAGGGACCAAATTGCTCAGCTCCAGGATTCAAACT 438
consensus_734#1 TTGCCAAAANNNNNGAAANNNNNT------------------------------------ 504
* ******* ** * *
consensus_734#0 TCGAGCTGAGTGGTTCATCAAAAGGTAACCTCTAGATCTGTCTCAGCAATTTATGCTGTC 498
consensus_734#1 ------------------------------------------------------------
consensus_734#0 ATAACTGTATCCTCAACCATTTGGAATTCAAACATCACAAGCCGCCAGGATGGCTCAAAT 558
consensus_734#1 ------------------------------------------------------------
consensus_734#0 GGAGAAACAAATTGAAGCCCTGGAAAGAGACAAGGTAGAACTGGCTGCGCAAAG 612
consensus_734#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||