These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [GGAAATCTATAAAACTACCAGGAGATGACGAAGAAGAAATTCCTCGCATAAAGGCGGCTGATGACTCTCGTCCTTCCCCCTTAATCAAATGGTGGGACGAGAATTCTCAAGCTGGCGGCATCGTCATAAATCGTCAAAAAGATGAGGAAGTGCGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATGTAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTCAGCAAAACTAAACCGTGAACCATCGTGCAGAGAATCCATCTTCGCAATGAGGTCAAGACCGCAACTTTAGAAAAGCTGGTTGGTCATTTGGGAACTCTTGAAGCAGTTAGGGACCAGCTACATGAGGCCAAGGAGCTCGCCAAAAAGACAGAGAAGGAATTAAGGGACCAAATTGCTCAGCTCCAGGATTCAAACTTCGAGCTGAGTGGTTCATCAAAAGGTAACCTCTAGATCTGTCTCAGCAATTTATGCTGTCATAACTGTATCCTCAACCATTTGGAATTCAAACATCACAAGCCGCCAGGATGGCTCAAATGGAGAAACAAATTGAAGCCCTGGAAAGAGACAAGGTAGAACTGGCTGCGCAAAG] [+] EMBL CB634120 [GGAAATCTATAAAACTACCAGGAGATGACGAAGAAGAAATTCCTCGCATAAAGGCGGCTGATGACTCTCGTCCTTCCCCCTTAATCAAATGGTGGGACGAGAATTCTCAAGCTGGCGGCATCGTCATAAATCGTCAAAAAGATGAGGAAGTGCGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATGTAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTCAGCAAAACTAAACCGTGAACCATCGTGCAGAGAATCCATCTTCGCAATGAGGTCAAGACCGCAACTTTAGAAAAGCTGGTTGGTCATTTGGGAACTCTTGAAGCAGTTAGGGACCAGCTACATGAGGCCAAGGAGCTCGCCAAAAAGACAGAGAAGGAATTAAGGGACCAAATTGCTCAGCTCCAGGATTCAAACTTCGAGCTGAGTGGTTCATCAAAAGGTAACCTCTAGATCTGTCTCAGCAATTTATGCTGTCATAACTGTATCCTCAACCATTTGGAATTCAAACATCACAAGCCGCCAGGATGGCTCAAATGGAGAAACAAATTGAAGCCCTGGAAAGAGACAAGGTAGAACTGGCTGCGCAAAG] consensusID : consensus_734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [CAAGAATCACCTCACGCTCAGCCAGGAACATCCTCAGGTAACTCATTTTCTCTTGTGATGCCGATTTAAATAACTTCAGCTTATTCGTCTAATGTCTTGGAAATACATCAGAACCACCAGGCGACGACGAAGAAGAAATTCTCCGCATAAAGGCGGCTGATGACTCTCGTCCTCCTATCTTACTCAAATGGTGGGACGAGAACTCACAAGCTGCCGGCATCGTCATAAATCGTCAAAAAGAAGATGATGAAGTGTGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATGTAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTTAGCAGAACTAAACCATGAACCATCATGCAGAGAATCCATCTTCGCAATGAGGCCAAGACCGCAACTTTAGAAAAGCTGGTTCCTNNNTTGGGAACTCTTGANGCAGTTAGGGANNAGCTACANNNNNNNNNNNNGCTTGCCAAAANNNNNGAAANNNNNT] [+] EMBL CF197093 [CAAGAATCACCTCACGCTCAGCCAGGAACATCCTCAGGTAACTCATTTTCTCTTGTGATGCCGATTTAAATAACTTCAGCTTATTCGTCTAATGTCTTGGAAATACATCAGAACCACCAGGCGACGACGAAGAAGAAATTCTCCGCATAAAGGCGGCTGATGACTCTCGTCCTCCTATCTTACTCAAATGGTGGGACGAGAACTCACAAGCTGCCGGCATCGTCATAAATCGTCAAAAAGAAGATGATGAAGTGTGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATGTAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTTAGCAGAACTAAACCATGAACCATCATGCAGAGAATCCATCTTCGCAATGAGGCCAAGACCGCAACTTTAGAAAAGCTGGTTCCTNNNTTGGGAACTCTTGANGCAGTTAGGGANNAGCTACANNNNNNNNNNNNGCTTGCCAAAANNNNNGAAANNNNNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_734#0 ------------------------------------------------------------ consensus_734#1 CAAGAATCACCTCACGCTCAGCCAGGAACATCCTCAGGTAACTCATTTTCTCTTGTGATG 60 consensus_734#0 --------------------------------------GGAAATCTAT-AAAACTACCAG 21 consensus_734#1 CCGATTTAAATAACTTCAGCTTATTCGTCTAATGTCTTGGAAATACATCAGAACCACCAG 120 ****** ** * *** ***** consensus_734#0 GAGATGACGAAGAAGAAATTCCTCGCATAAAGGCGGCTGATGACTCTCGTCCTTCCCCCT 81 consensus_734#1 GCGACGACGAAGAAGAAATTCTCCGCATAAAGGCGGCTGATGACTCTCGTCCTCCTATCT 180 * ** **************** ****************************** * ** consensus_734#0 TAATCAAATGGTGGGACGAGAATTCTCAAGCTGGCGGCATCGTCATAAATCGTCAAAAAG 141 consensus_734#1 TACTCAAATGGTGGGACGAGAACTCACAAGCTGCCGGCATCGTCATAAATCGTCAAAAAG 240 ** ******************* ** ******* ************************** consensus_734#0 A---TGAGGAAGTGCGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATG 198 consensus_734#1 AAGATGATGAAGTGTGCCAGCTGAAGAAGGCACTTGGAGAAGCCACTCGCATTGTGAATG 300 * *** ****** ********************************************* consensus_734#0 TAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTCAGCAAAACTAAACCGT 258 consensus_734#1 TAAATCTTCCGGGTGACTGCCTTTGATGACTTTGTTTTCTCTTTAGCAGAACTAAACCAT 360 ******************************************* **** ********* * consensus_734#0 GAACCATCGTGCAGAGAATCCATCTTCGCAATGAGGTCAAGACCGCAACTTTAGAAAAGC 318 consensus_734#1 GAACCATCATGCAGAGAATCCATCTTCGCAATGAGGCCAAGACCGCAACTTTAGAAAAGC 420 ******** *************************** *********************** consensus_734#0 TGGTTGGTCATTTGGGAACTCTTGAAGCAGTTAGGGACCAGCTACATGAGGCCAAGGAGC 378 consensus_734#1 TGGTTCCTNNNTTGGGAACTCTTGANGCAGTTAGGGANNAGCTACANNNNNNNNNNNNGC 480 ***** * ************** *********** ******* ** consensus_734#0 TCGCCAAAAAGACAGAGAAGGAATTAAGGGACCAAATTGCTCAGCTCCAGGATTCAAACT 438 consensus_734#1 TTGCCAAAANNNNNGAAANNNNNT------------------------------------ 504 * ******* ** * * consensus_734#0 TCGAGCTGAGTGGTTCATCAAAAGGTAACCTCTAGATCTGTCTCAGCAATTTATGCTGTC 498 consensus_734#1 ------------------------------------------------------------ consensus_734#0 ATAACTGTATCCTCAACCATTTGGAATTCAAACATCACAAGCCGCCAGGATGGCTCAAAT 558 consensus_734#1 ------------------------------------------------------------ consensus_734#0 GGAGAAACAAATTGAAGCCCTGGAAAGAGACAAGGTAGAACTGGCTGCGCAAAG 612 consensus_734#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||