cluster # 7340

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Oryza sativa
cluster # 7340 cluster # 7340 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7340#0 length = 913 sequences # 2

consensus_7340#1 length = 388 sequences # 1
consensus_7340#2 length = 167 sequences # 1

consensusID : consensus_7340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 913
fasta sequence

                              [ACTCACTAAAAATTAGATAAAGCGATCGGATTGCATGATCTTTATACAATATCGCTCATAAGAAATGCCTCTACGAGAAGCGACATCACGGCCACATCAGCCACGCAGCCAAGGTGACCAAAGAATGTAGTTGTCTCCCTGTAACCCCTAACCCTTTCACTATACACAGAAGAAAAACAATGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAAATCTTAAAAATTTACGAAGAATCAAACGATCCACAAATAAAACCTTGTGGTCGTGACTAAAAACAGAGAAGGAATAACAAGAGCCAGCCAATCACTTGGGCAACAGCCATTCTGTGTAGAACAGTTCTGCAGTTCTGTAATGAGGCAAAAATACCACAATCGTTACATCTTTTAATCACACGTATTGTCTATATAATAAAAAAAATATAGTTACAGAATTACAAATCGTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTTGCGGGCACGAATTAGTGGTGGTAGCAAATGAAGGTTGTGTATATGAACCTCGTAGCAGTCCAATTGCAATGGCCTTGTATGCAGCTTCTGATGGATGGAAGCCATCCCATGACCCAAACTTTTGTGGGTCATCGCAAACCTTGTATTCACCATATCCACATCTTGCAGTTCCAGATACACCATACGGTCCTCCTCCACCACAACAAGCTGTCAAAGGATCTTTGATTCCAAATTGTTCAGGGGAAAGGAAAACTTCCATGGCAGCTCCATAGTAATCAGCATAGATGATGGCCACATCAGGATGAAGCTTGCGTAACTTTTCCAATTCATCTATAAGAAGTTTGTTGTGGTATTGCGAGAACTCGTTCATCCACCTGAGGCAACCTGTCTCTGGCTCATAATCTTCCTTCTTAC]

[+] EMBL CB659054             [ACTCACTAAAAATTAGATAAAGCGATCGGATTGCATGATCTTTATACAATATCGCTCATAAGAAATGCCTCTACGAGAAGCGACATCACGGCCACATCAGCCACGCAGCCAAGGTGACCAAAGAATGTAGTTGTCTCCCTGTAACCCCTAACCCTTTCACTATACACAGAAGAAAAACAATGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAAATCTTAAAAATTTACGAAGAATCAAACGATCCACAAATAAAACCTTGTGGTCGTGACTAAAAACAGAGAAGGAATAACAAGAGCCAGCCAATCACTTGGGCAACAGCCATTCTGTGTAGAACAGTTCTGCAGTTCTGTAATGAGGCAAAAATACCACAATCGTTACATCTTTTAATCACACGTATTGTCTATATAATAAAAAAAATATAGTTACAGAATTACAAATCGTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTTGCGGGCACGAATTAGTGGTGGTAGCAAATGAAGGTTGTGTATATGAACCTCGTAGCAGTCCAATTGCAATGGCCTTGTATGCAGCTTCTGATGGATGGAAGCCATCCCATGACCCAAACTTTTGTGGGTCATCGCAAACCTTGTATTCACCATATCCACATCTTGCAGTTCCAGATACACCATACGGTCCTCCTCCACCACAACAAGCTGTCAAAGGATCTTTGATTCCAAATTGTTCAGGGGAAAGGAAAACTTCCATGGCAGCTCCATAG                                                                                                                                              ]
[-] EMBL AK105142             [                                                                                                                                                                                                                                                                                                                                                                                                      TTACATCTTTTAATCACACGTATTGTCTATATAATAAAAAAAATATAGTTACAGAATTACAAATCGTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTTGCGGGCACGAATTAGTGGTGGTAGCAAATGAAGGTTGTGTATATGAACCTCGTAGCAGTCCAATTGCAATGGCCTTGTATGCAGCTTCTGATGGATGGAAGCCATCCCATGACCCAAACTTTTGTGGGTCATCGCAAACCTTGTATTCACCATATCCACATCTTGCAGTTCCAGATACACCATACGGTCCTCCTCCACCACAACAAGCTGTCAAAGGATCTTTGATTCCAAATTGTTCAGGGGAAAGGAAAACTTCCATGGCAGCTCCATAGTAATCAGCATAGATGATGGCCACATCAGGATGAAGCTTGCGTAACTTTTCCAATTCATCTATAAGAAGTTTGTTGTGGTATTGCGAGAACTCGTTCATCCACCTGAGGCAACCTGTCTCTGGCTCATAATCTTCCTTCTTAC]




>consensus_7340#0
ACTCACTAAAAATTAGATAAAGCGATCGGATTGCATGATCTTTATACAATATCGCTCATA
AGAAATGCCTCTACGAGAAGCGACATCACGGCCACATCAGCCACGCAGCCAAGGTGACCA
AAGAATGTAGTTGTCTCCCTGTAACCCCTAACCCTTTCACTATACACAGAAGAAAAACAA
TGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAAATCTTAAAAATT
TACGAAGAATCAAACGATCCACAAATAAAACCTTGTGGTCGTGACTAAAAACAGAGAAGG
AATAACAAGAGCCAGCCAATCACTTGGGCAACAGCCATTCTGTGTAGAACAGTTCTGCAG
TTCTGTAATGAGGCAAAAATACCACAATCGTTACATCTTTTAATCACACGTATTGTCTAT
ATAATAAAAAAAATATAGTTACAGAATTACAAATCGTAGAGGACCTTGTATTCAACAGAA
GAACTGAGCTCAGTAATTTGCGGGCACGAATTAGTGGTGGTAGCAAATGAAGGTTGTGTA
TATGAACCTCGTAGCAGTCCAATTGCAATGGCCTTGTATGCAGCTTCTGATGGATGGAAG
CCATCCCATGACCCAAACTTTTGTGGGTCATCGCAAACCTTGTATTCACCATATCCACAT
CTTGCAGTTCCAGATACACCATACGGTCCTCCTCCACCACAACAAGCTGTCAAAGGATCT
TTGATTCCAAATTGTTCAGGGGAAAGGAAAACTTCCATGGCAGCTCCATAGTAATCAGCA
TAGATGATGGCCACATCAGGATGAAGCTTGCGTAACTTTTCCAATTCATCTATAAGAAGT
TTGTTGTGGTATTGCGAGAACTCGTTCATCCACCTGAGGCAACCTGTCTCTGGCTCATAA
TCTTCCTTCTTAC

consensusID : consensus_7340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [GAGAGCCATTCGTGTAGAACAGGTCTGGAGTTCTGGANGAGGGANAATACCACAATCGTTACATCTTTTAATCCCACGTATGGCTATATAATAAAAAACATATAGTTCACAGAATGGACAAATCGTTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTGGGGGCCCGAATTAGNGGGGGTAGCCAATGACGGTGGNGTATATGAACCTCGTAGCAGTCCAATGCAAGGGCCTTGTATGCAGTTCTGATGGATGGAAGCCATCCCATGACCAAACTTTGGTGGGGTCATCGCAAACCTTGTATTCACCATATCCACATCTNGGCAGTTCCAGATACACCATAGGGTCCTCCTCCACCACAACAAGCTGTCACAAGGATC]

[-] EMBL BM420470             [GAGAGCCATTCGTGTAGAACAGGTCTGGAGTTCTGGANGAGGGANAATACCACAATCGTTACATCTTTTAATCCCACGTATGGCTATATAATAAAAAACATATAGTTCACAGAATGGACAAATCGTTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTGGGGGCCCGAATTAGNGGGGGTAGCCAATGACGGTGGNGTATATGAACCTCGTAGCAGTCCAATGCAAGGGCCTTGTATGCAGTTCTGATGGATGGAAGCCATCCCATGACCAAACTTTGGTGGGGTCATCGCAAACCTTGTATTCACCATATCCACATCTNGGCAGTTCCAGATACACCATAGGGTCCTCCTCCACCACAACAAGCTGTCACAAGGATC]




>consensus_7340#1
GAGAGCCATTCGTGTAGAACAGGTCTGGAGTTCTGGANGAGGGANAATACCACAATCGTT
ACATCTTTTAATCCCACGTATGGCTATATAATAAAAAACATATAGTTCACAGAATGGACA
AATCGTTAGAGGACCTTGTATTCAACAGAAGAACTGAGCTCAGTAATTGGGGGCCCGAAT
TAGNGGGGGTAGCCAATGACGGTGGNGTATATGAACCTCGTAGCAGTCCAATGCAAGGGC
CTTGTATGCAGTTCTGATGGATGGAAGCCATCCCATGACCAAACTTTGGTGGGGTCATCG
CAAACCTTGTATTCACCATATCCACATCTNGGCAGTTCCAGATACACCATAGGGTCCTCC
TCCACCACAACAAGCTGTCACAAGGATC

consensusID : consensus_7340#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence

                              [TTTTTTTTTTCTTCCCGGTAATCCCCTAACCCTTTCANTATACACAGAAGAAAAACAAGGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAATATCTTAAACAATTTACGAAGAATCAAAGCGATCCACAAATAAAACCTGTGGTGGTCGNGA]

[-] EMBL BQ907236             [TTTTTTTTTTCTTCCCGGTAATCCCCTAACCCTTTCANTATACACAGAAGAAAAACAAGGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAATATCTTAAACAATTTACGAAGAATCAAAGCGATCCACAAATAAAACCTGTGGTGGTCGNGA]




>consensus_7340#2
TTTTTTTTTTCTTCCCGGTAATCCCCTAACCCTTTCANTATACACAGAAGAAAAACAAGG
GAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAATATCTTAAACAATT
TACGAAGAATCAAAGCGATCCACAAATAAAACCTGTGGTGGTCGNGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7340#0      ACTCACTAAAAATTAGATAAAGCGATCGGATTGCATGATCTTTATACAATATCGCTCATA 60
consensus_7340#1      ------------------------------------------------------------
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      AGAAATGCCTCTACGAGAAGCGACATCACGGCCACATCAGCCACGCAGCCAAGGTGACCA 120
consensus_7340#1      ------------------------------------------------------------
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      AAGAATGTAGTTGTCTCCCTGTAACCCCTAACCCTTTCACTATACACAGAAGAAAAACAA 180
consensus_7340#1      ------------------------------------------------------------
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      TGGAGCTAAATTATAATAATACTACACATACCCTATAAGAAATAATAAATCTTAAAAATT 240
consensus_7340#1      ------------------------------------------------------------
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      TACGAAGAATCAAACGATCCACAAATAAAACCTTGTGGTCGTGACTAAAAACAGAGAAGG 300
consensus_7340#1      ------------------------------------------------------------
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      AATAACAAGAGCCAGCCAATCACTTGGGCAACAGCCATTCTGTGTAGAACAGTTCTGCAG 360
consensus_7340#1      -----------------------------GAGAGCCATTC-GTGTAGAACAGGTCTGGAG 30
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      TTCTGTAATGAGGCAAAAATACCACAATCGTTACATCTTTTAATCACACGTATTGTCTAT 420
consensus_7340#1      TTCTG-GANGAGG-GANAATACCACAATCGTTACATCTTTTAATCCCACGTAT-GGCTAT 87
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      ATAATAAAAAAAATATAGTT-ACAGAATT-ACAAATCGT-AGAGGACCTTGTATTCAACA 477
consensus_7340#1      ATAATAAAAAACATATAGTTCACAGAATGGACAAATCGTTAGAGGACCTTGTATTCAACA 147
consensus_7340#2      ------------------------------------------TTTTTTTTTTCTTCCCGG 18
                                                                      ** * ***    

consensus_7340#0      GAAGAACTGAGCTCAGTAATTTGCGGGCACGAATTAGTGGTGGTAGCAAATGAAGGTTGT 537
consensus_7340#1      GAAGAACTGAGCTCAGTAATT-GGGGGCCCGAATTAGNGGGGGTAGCCAATGACGGTGGN 206
consensus_7340#2      TAATCCCCTAACCCTTTCANTATACACAGAAGAAAAACAAGGGAGCTAAATTATAATAAT 78
                       **   *  * * *  * * *           *  *     **     *** *   *   

consensus_7340#0      G-TATATGAACCTCGTAGCAGTCCAATTGCAATGGCCTTGTATGCAGCTTCTGATGGATG 596
consensus_7340#1      G-TATATGAACCTCGTAGCAGTCCAAT-GCAAGGGCCTTGTATGCAG-TTCTGATGGATG 263
consensus_7340#2      ACTACACATACCCTATAAGA----AAT---AATAATATCTTAAACAATTTACGAAGAATC 131
                        ** *   ***   **  *    ***   **     *  **  **  **  ** * ** 

consensus_7340#0      GAAGCCATCCCATGACCCAAACTTTTGTGGG-TCATCGCAAACCTTGTATTCACCATATC 655
consensus_7340#1      GAAGCCATCCCATGACC-AAACTTTGGTGGGGTCATCGCAAACCTTGTATTCACCATATC 322
consensus_7340#2      AAAGCGATCCACAAATAAAACCTGTGGTGG-----TCGNGA------------------- 167
                       **** ****    *   ** ** * ****     ***  *                   

consensus_7340#0      CACATCTTG-CAGTTCCAGATACACCATACGGTCCTCCTCCACCACAACAAGCTGTCA-A 713
consensus_7340#1      CACATCTNGGCAGTTCCAGATACACCATAGGGTCCTCCTCCACCACAACAAGCTGTCACA 382
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      AGGATCTTTGATTCCAAATTGTTCAGGGGAAAGGAAAACTTCCATGGCAGCTCCATAGTA 773
consensus_7340#1      AGGATC------------------------------------------------------ 388
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      ATCAGCATAGATGATGGCCACATCAGGATGAAGCTTGCGTAACTTTTCCAATTCATCTAT 833
consensus_7340#1      ------------------------------------------------------------
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      AAGAAGTTTGTTGTGGTATTGCGAGAACTCGTTCATCCACCTGAGGCAACCTGTCTCTGG 893
consensus_7340#1      ------------------------------------------------------------
consensus_7340#2      ------------------------------------------------------------
                                                                                  

consensus_7340#0      CTCATAATCTTCCTTCTTAC 913
consensus_7340#1      --------------------
consensus_7340#2      --------------------