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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1612 fasta sequence
[GGCTGTAACTACCTTTTTTTATTTACTTTATTTGTTTCCTGCTCTATGTAGTGACATGCTGTGTTATATTGCTGAATTATAATACCATCAAATAGTTTGGAGAAAGTACTTTATTTTTTCTGCTGGCATGTTTGAACATTCACAATACTATATCGTGCATATGTACCTCTCTGTTTTGGTCTTGTCAGTTAAAAACGAACGGAGATTTCTTGTGCTCTCTTTTTTTTAGTAATTTCTGGAGCTTAGGTTTCTTTAGCGTTTGAAAGGAATGAGGAATTGATAATGATCGAGATGTCGTGTTATCAACTTTTCTTTCTTAAACAATATACTAGTCATACTCCTTTTCCTGTATTTACAGTGTCAAATCTCTGTCAGAGGATGAATGGATACTTGACCCGGTTATCATTGCTGATATATATGAGCAACAGGTATATATCTTCACTTCCATCAATACACTAGAAACTATGCACATTATGATCTTATTAAAAGAGCTTTTGTGTATCAATGGCGTTACACTTTCCACTGTATTGATCTTTTAAAGAGTGTCATTTGTTGTTTTCTTATAAAGAATTATAGGTGATATTGTTATTAGTACATGCTGACCCGTTATTGTAGATTTCATAGTTATCATCTACTAGGCTTTTTATACAAGTTGTCTCTATGATCTGCTCTGCAGCTCTGGCTTGTATGGTAGTAACTGAAGCAAAAAGTCCTGACTTACAAAACAATTGTGGGTGTGACTCTGTTAGTTGCAGTTGCTGGCTATTTTCACATGAAGCTATTTTTTACTAAATATGATTGATGTAATTATATGTAAAAAGGTAAAAATTGTAACGAACTGCTTGGAATGTCTAGTAAAACTATCATAGCGTCCATTCTGCGTTACTTTGATGTGCAGTTGTGTACCCATTCCTGGGTCATGCTGAAACACAAATTGGCGTGATACGCTTCATTAATTGGTGATTCCATTTTCAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGTATGCATTTTCATTAATGGACTAAAGTTATCCTACCATATGACTATACTATCAAGCAAAAGGAAATTTCTCATTCTATCCCCTGACATTTGGCAAATGATATGTACTGCATTTAAACACACCGTTATGTATTATCTCGTAATGCTTATCTATTTCATATTTGTGACCTATTTCGTTGACTTATGATTGGCATAATTAGCTAATACTGGATGCTTCAACTGCATTTTATGCGGTTTGTATAAATGCACAGAGGCCCTTATGTCTTCCTTTTCCTGCTTTAGGGCCCTAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTCTTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATATGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTC]
[+] EMBL AK071204 [GGCTGTAACTACCTTTTTTTATTTACTTTATTTGTTTCCTGCTCTATGTAGTGACATGCTGTGTTATATTGCTGAATTATAATACCATCAAATAGTTTGGAGAAAGTACTTTATTTTTTCTGCTGGCATGTTTGAACATTCACAATACTATATCGTGCATATGTACCTCTCTGTTTTGGTCTTGTCAGTTAAAAACGAACGGAGATTTCTTGTGCTCTCTTTTTTTTAGTAATTTCTGGAGCTTAGGTTTCTTTAGCGTTTGAAAGGAATGAGGAATTGATAATGATCGAGATGTCGTGTTATCAACTTTTCTTTCTTAAACAATATACTAGTCATACTCCTTTTCCTGTATTTACAGTGTCAAATCTCTGTCAGAGGATGAATGGATACTTGACCCGGTTATCATTGCTGATATATATGAGCAACAGGTATATATCTTCACTTCCATCAATACACTAGAAACTATGCACATTATGATCTTATTAAAAGAGCTTTTGTGTATCAATGGCGTTACACTTTCCACTGTATTGATCTTTTAAAGAGTGTCATTTGTTGTTTTCTTATAAAGAATTATAGGTGATATTGTTATTAGTACATGCTGACCCGTTATTGTAGATTTCATAGTTATCATCTACTAGGCTTTTTATACAAGTTGTCTCTATGATCTGCTCTGCAGCTCTGGCTTGTATGGTAGTAACTGAAGCAAAAAGTCCTGACTTACAAAACAATTGTGGGTGTGACTCTGTTAGTTGCAGTTGCTGGCTATTTTCACATGAAGCTATTTTTTACTAAATATGATTGATGTAATTATATGTAAAAAGGTAAAAATTGTAACGAACTGCTTGGAATGTCTAGTAAAACTATCATAGCGTCCATTCTGCGTTACTTTGATGTGCAGTTGTGTACCCATTCCTGGGTCATGCTGAAACACAAATTGGCGTGATACGCTTCATTAATTGGTGATTCCATTTTCAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGTATGCATTTTCATTAATGGACTAAAGTTATCCTACCATATGACTATACTATCAAGCAAAAGGAAATTTCTCATTCTATCCCCTGACATTTGGCAAATGATATGTACTGCATTTAAACACACCGTTATGTATTATCTCGTAATGCTTATCTATTTCATATTTGTGACCTATTTCGTTGACTTATGATTGGCATAATTAGCTAATACTGGATGCTTCAACTGCATTTTATGCGGTTTGTATAAATGCACAGAGGCCCTTATGTCTTCCTTTTCCTGCTTTAGGGCCCTAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTCTTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATATGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTC]
consensusID : consensus_7359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 433 fasta sequence
[AGAGGACGAGACAAGGGGGCTGATATATATGAGCAACAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGGCCCTAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTCTTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATAAGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTCACTGAGCCTCAATTTTTCGTTTTGTCAAAAAAAAAAAA]
[-] EMBL CA758988 [AGAGGACGAGACAAGGGGGCTGATATATATGAGCAACAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTTGTCAGGGAAAGGGCCCTAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTCTTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATAAGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTCACTGAGCCTCAATTTTTCGTTTTGTCAAAAAAAAAAAA]
[+] EMBL CA767609 [ ATATGAGCAACAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGGCCCTAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTCTTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATAAGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTCACTGAGCCTCAATTTTTC ]
[-] EMBL D43011 [ GTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGGCCCTAAGCTAGATTGNATGGTAACGGAAGATNAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGNCACTCTTCGGCTGNCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGATCCTGGTCTTTTGACNCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATATGCCAGGGAATGTAACCAGGAATCGACATAGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7359#0 GGCTGTAACTACCTTTTTTTATTTACTTTATTTGTTTCCTGCTCTATGTAGTGACATGCT 60
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 GTGTTATATTGCTGAATTATAATACCATCAAATAGTTTGGAGAAAGTACTTTATTTTTTC 120
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 TGCTGGCATGTTTGAACATTCACAATACTATATCGTGCATATGTACCTCTCTGTTTTGGT 180
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 CTTGTCAGTTAAAAACGAACGGAGATTTCTTGTGCTCTCTTTTTTTTAGTAATTTCTGGA 240
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 GCTTAGGTTTCTTTAGCGTTTGAAAGGAATGAGGAATTGATAATGATCGAGATGTCGTGT 300
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 TATCAACTTTTCTTTCTTAAACAATATACTAGTCATACTCCTTTTCCTGTATTTACAGTG 360
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 TCAAATCTCTGTCAGAGGATGAATGGATACTTGACCCGGTTATCATTGCTGATATATATG 420
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 AGCAACAGGTATATATCTTCACTTCCATCAATACACTAGAAACTATGCACATTATGATCT 480
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 TATTAAAAGAGCTTTTGTGTATCAATGGCGTTACACTTTCCACTGTATTGATCTTTTAAA 540
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 GAGTGTCATTTGTTGTTTTCTTATAAAGAATTATAGGTGATATTGTTATTAGTACATGCT 600
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 GACCCGTTATTGTAGATTTCATAGTTATCATCTACTAGGCTTTTTATACAAGTTGTCTCT 660
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 ATGATCTGCTCTGCAGCTCTGGCTTGTATGGTAGTAACTGAAGCAAAAAGTCCTGACTTA 720
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 CAAAACAATTGTGGGTGTGACTCTGTTAGTTGCAGTTGCTGGCTATTTTCACATGAAGCT 780
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 ATTTTTTACTAAATATGATTGATGTAATTATATGTAAAAAGGTAAAAATTGTAACGAACT 840
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 GCTTGGAATGTCTAGTAAAACTATCATAGCGTCCATTCTGCGTTACTTTGATGTGCAGTT 900
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 GTGTACCCATTCCTGGGTCATGCTGAAACACAAATTGGCGTGATACGCTTCATTAATTGG 960
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 TGATTCCATTTTCAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCG 1020
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 TCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGTATGC 1080
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 ATTTTCATTAATGGACTAAAGTTATCCTACCATATGACTATACTATCAAGCAAAAGGAAA 1140
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 TTTCTCATTCTATCCCCTGACATTTGGCAAATGATATGTACTGCATTTAAACACACCGTT 1200
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 ATGTATTATCTCGTAATGCTTATCTATTTCATATTTGTGACCTATTTCGTTGACTTATGA 1260
consensus_7359#1 --AGAGGACGAGACAAGGG--GGCTGATATATATGAGCAAC--AGGGCCTTGATTTC--A 52
* * ** * ** * **** * ** * * **** ** *
consensus_7359#0 TTGGCATAATTAGCTAATACTGGATGCTTCAACTGCATTTTATGCGGTTTGTATAAATGC 1320
consensus_7359#1 TTGTCG--ATGGA--GGTACTAGAATTGCTGACC-CGTCTACTGTGGTTGATATGACGG- 106
*** * ** **** ** ** * * * ** **** *** * *
consensus_7359#0 ACAGAGGCCCTTATGTCTTCCTTTTCCTGCTTTAGGGCCCTAAGCTAGATTGGATGGTAG 1380
consensus_7359#1 ---GAAGCTACCCTACCATCATTCGTCAGGGAAAGGGCCCTAAGCTAGATTGGATGGTAG 163
** ** * * ** ** * * ***************************
consensus_7359#0 CGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTC 1440
consensus_7359#1 CGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTC 223
************************************************************
consensus_7359#0 TTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTT 1500
consensus_7359#1 TTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTT 283
************************************************************
consensus_7359#0 TTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATAT 1560
consensus_7359#1 TTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATAA 343
***********************************************************
consensus_7359#0 GCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTC-------- 1612
consensus_7359#1 GCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTCACTGAGCC 403
****************************************************
consensus_7359#0 ------------------------------
consensus_7359#1 TCAATTTTTCGTTTTGTCAAAAAAAAAAAA 433
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||