These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1612 fasta sequence [GGCTGTAACTACCTTTTTTTATTTACTTTATTTGTTTCCTGCTCTATGTAGTGACATGCTGTGTTATATTGCTGAATTATAATACCATCAAATAGTTTGGAGAAAGTACTTTATTTTTTCTGCTGGCATGTTTGAACATTCACAATACTATATCGTGCATATGTACCTCTCTGTTTTGGTCTTGTCAGTTAAAAACGAACGGAGATTTCTTGTGCTCTCTTTTTTTTAGTAATTTCTGGAGCTTAGGTTTCTTTAGCGTTTGAAAGGAATGAGGAATTGATAATGATCGAGATGTCGTGTTATCAACTTTTCTTTCTTAAACAATATACTAGTCATACTCCTTTTCCTGTATTTACAGTGTCAAATCTCTGTCAGAGGATGAATGGATACTTGACCCGGTTATCATTGCTGATATATATGAGCAACAGGTATATATCTTCACTTCCATCAATACACTAGAAACTATGCACATTATGATCTTATTAAAAGAGCTTTTGTGTATCAATGGCGTTACACTTTCCACTGTATTGATCTTTTAAAGAGTGTCATTTGTTGTTTTCTTATAAAGAATTATAGGTGATATTGTTATTAGTACATGCTGACCCGTTATTGTAGATTTCATAGTTATCATCTACTAGGCTTTTTATACAAGTTGTCTCTATGATCTGCTCTGCAGCTCTGGCTTGTATGGTAGTAACTGAAGCAAAAAGTCCTGACTTACAAAACAATTGTGGGTGTGACTCTGTTAGTTGCAGTTGCTGGCTATTTTCACATGAAGCTATTTTTTACTAAATATGATTGATGTAATTATATGTAAAAAGGTAAAAATTGTAACGAACTGCTTGGAATGTCTAGTAAAACTATCATAGCGTCCATTCTGCGTTACTTTGATGTGCAGTTGTGTACCCATTCCTGGGTCATGCTGAAACACAAATTGGCGTGATACGCTTCATTAATTGGTGATTCCATTTTCAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGTATGCATTTTCATTAATGGACTAAAGTTATCCTACCATATGACTATACTATCAAGCAAAAGGAAATTTCTCATTCTATCCCCTGACATTTGGCAAATGATATGTACTGCATTTAAACACACCGTTATGTATTATCTCGTAATGCTTATCTATTTCATATTTGTGACCTATTTCGTTGACTTATGATTGGCATAATTAGCTAATACTGGATGCTTCAACTGCATTTTATGCGGTTTGTATAAATGCACAGAGGCCCTTATGTCTTCCTTTTCCTGCTTTAGGGCCCTAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTCTTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATATGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTC] [+] EMBL AK071204 [GGCTGTAACTACCTTTTTTTATTTACTTTATTTGTTTCCTGCTCTATGTAGTGACATGCTGTGTTATATTGCTGAATTATAATACCATCAAATAGTTTGGAGAAAGTACTTTATTTTTTCTGCTGGCATGTTTGAACATTCACAATACTATATCGTGCATATGTACCTCTCTGTTTTGGTCTTGTCAGTTAAAAACGAACGGAGATTTCTTGTGCTCTCTTTTTTTTAGTAATTTCTGGAGCTTAGGTTTCTTTAGCGTTTGAAAGGAATGAGGAATTGATAATGATCGAGATGTCGTGTTATCAACTTTTCTTTCTTAAACAATATACTAGTCATACTCCTTTTCCTGTATTTACAGTGTCAAATCTCTGTCAGAGGATGAATGGATACTTGACCCGGTTATCATTGCTGATATATATGAGCAACAGGTATATATCTTCACTTCCATCAATACACTAGAAACTATGCACATTATGATCTTATTAAAAGAGCTTTTGTGTATCAATGGCGTTACACTTTCCACTGTATTGATCTTTTAAAGAGTGTCATTTGTTGTTTTCTTATAAAGAATTATAGGTGATATTGTTATTAGTACATGCTGACCCGTTATTGTAGATTTCATAGTTATCATCTACTAGGCTTTTTATACAAGTTGTCTCTATGATCTGCTCTGCAGCTCTGGCTTGTATGGTAGTAACTGAAGCAAAAAGTCCTGACTTACAAAACAATTGTGGGTGTGACTCTGTTAGTTGCAGTTGCTGGCTATTTTCACATGAAGCTATTTTTTACTAAATATGATTGATGTAATTATATGTAAAAAGGTAAAAATTGTAACGAACTGCTTGGAATGTCTAGTAAAACTATCATAGCGTCCATTCTGCGTTACTTTGATGTGCAGTTGTGTACCCATTCCTGGGTCATGCTGAAACACAAATTGGCGTGATACGCTTCATTAATTGGTGATTCCATTTTCAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGTATGCATTTTCATTAATGGACTAAAGTTATCCTACCATATGACTATACTATCAAGCAAAAGGAAATTTCTCATTCTATCCCCTGACATTTGGCAAATGATATGTACTGCATTTAAACACACCGTTATGTATTATCTCGTAATGCTTATCTATTTCATATTTGTGACCTATTTCGTTGACTTATGATTGGCATAATTAGCTAATACTGGATGCTTCAACTGCATTTTATGCGGTTTGTATAAATGCACAGAGGCCCTTATGTCTTCCTTTTCCTGCTTTAGGGCCCTAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTCTTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATATGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTC] consensusID : consensus_7359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 433 fasta sequence [AGAGGACGAGACAAGGGGGCTGATATATATGAGCAACAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGGCCCTAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTCTTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATAAGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTCACTGAGCCTCAATTTTTCGTTTTGTCAAAAAAAAAAAA] [-] EMBL CA758988 [AGAGGACGAGACAAGGGGGCTGATATATATGAGCAACAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTTGTCAGGGAAAGGGCCCTAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTCTTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATAAGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTCACTGAGCCTCAATTTTTCGTTTTGTCAAAAAAAAAAAA] [+] EMBL CA767609 [ ATATGAGCAACAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCGTCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGGCCCTAAGCTAGATTGGATGGTAGCGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTCTTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTTTTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATAAGCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTCACTGAGCCTCAATTTTTC ] [-] EMBL D43011 [ GTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGGCCCTAAGCTAGATTGNATGGTAACGGAAGATNAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGNCACTCTTCGGCTGNCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGATCCTGGTCTTTTGACNCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATATGCCAGGGAATGTAACCAGGAATCGACATAGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7359#0 GGCTGTAACTACCTTTTTTTATTTACTTTATTTGTTTCCTGCTCTATGTAGTGACATGCT 60 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 GTGTTATATTGCTGAATTATAATACCATCAAATAGTTTGGAGAAAGTACTTTATTTTTTC 120 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 TGCTGGCATGTTTGAACATTCACAATACTATATCGTGCATATGTACCTCTCTGTTTTGGT 180 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 CTTGTCAGTTAAAAACGAACGGAGATTTCTTGTGCTCTCTTTTTTTTAGTAATTTCTGGA 240 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 GCTTAGGTTTCTTTAGCGTTTGAAAGGAATGAGGAATTGATAATGATCGAGATGTCGTGT 300 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 TATCAACTTTTCTTTCTTAAACAATATACTAGTCATACTCCTTTTCCTGTATTTACAGTG 360 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 TCAAATCTCTGTCAGAGGATGAATGGATACTTGACCCGGTTATCATTGCTGATATATATG 420 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 AGCAACAGGTATATATCTTCACTTCCATCAATACACTAGAAACTATGCACATTATGATCT 480 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 TATTAAAAGAGCTTTTGTGTATCAATGGCGTTACACTTTCCACTGTATTGATCTTTTAAA 540 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 GAGTGTCATTTGTTGTTTTCTTATAAAGAATTATAGGTGATATTGTTATTAGTACATGCT 600 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 GACCCGTTATTGTAGATTTCATAGTTATCATCTACTAGGCTTTTTATACAAGTTGTCTCT 660 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 ATGATCTGCTCTGCAGCTCTGGCTTGTATGGTAGTAACTGAAGCAAAAAGTCCTGACTTA 720 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 CAAAACAATTGTGGGTGTGACTCTGTTAGTTGCAGTTGCTGGCTATTTTCACATGAAGCT 780 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 ATTTTTTACTAAATATGATTGATGTAATTATATGTAAAAAGGTAAAAATTGTAACGAACT 840 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 GCTTGGAATGTCTAGTAAAACTATCATAGCGTCCATTCTGCGTTACTTTGATGTGCAGTT 900 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 GTGTACCCATTCCTGGGTCATGCTGAAACACAAATTGGCGTGATACGCTTCATTAATTGG 960 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 TGATTCCATTTTCAGGGCCTTGATTTCATTGTCGATGGAGGTACTAGAATTGCTGACCCG 1020 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 TCTACTGTGGTTGATATGACGGGAAGCTACCCTACCATCATTCGTCAGGGAAAGGTATGC 1080 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 ATTTTCATTAATGGACTAAAGTTATCCTACCATATGACTATACTATCAAGCAAAAGGAAA 1140 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 TTTCTCATTCTATCCCCTGACATTTGGCAAATGATATGTACTGCATTTAAACACACCGTT 1200 consensus_7359#1 ------------------------------------------------------------ consensus_7359#0 ATGTATTATCTCGTAATGCTTATCTATTTCATATTTGTGACCTATTTCGTTGACTTATGA 1260 consensus_7359#1 --AGAGGACGAGACAAGGG--GGCTGATATATATGAGCAAC--AGGGCCTTGATTTC--A 52 * * ** * ** * **** * ** * * **** ** * consensus_7359#0 TTGGCATAATTAGCTAATACTGGATGCTTCAACTGCATTTTATGCGGTTTGTATAAATGC 1320 consensus_7359#1 TTGTCG--ATGGA--GGTACTAGAATTGCTGACC-CGTCTACTGTGGTTGATATGACGG- 106 *** * ** **** ** ** * * * ** **** *** * * consensus_7359#0 ACAGAGGCCCTTATGTCTTCCTTTTCCTGCTTTAGGGCCCTAAGCTAGATTGGATGGTAG 1380 consensus_7359#1 ---GAAGCTACCCTACCATCATTCGTCAGGGAAAGGGCCCTAAGCTAGATTGGATGGTAG 163 ** ** * * ** ** * * *************************** consensus_7359#0 CGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTC 1440 consensus_7359#1 CGGAAGATGAGGAACAAGAGTCGCGACCAACATTTGCGTATAAAGCAGCTTGAGTCACTC 223 ************************************************************ consensus_7359#0 TTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTT 1500 consensus_7359#1 TTCGGCTGTCCTATCATAGGAGGTTGTAAACTTGTAATTACTTCACCAGAGCCTGGTCTT 283 ************************************************************ consensus_7359#0 TTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATAT 1560 consensus_7359#1 TTGACTCCTGAATCTGCTACTCTCAGCTAGACCAGTATATATACTACATGTTGTAAATAA 343 *********************************************************** consensus_7359#0 GCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTC-------- 1612 consensus_7359#1 GCCAGGGAATGTAACCAGGAATCGACATAGTTCACCAGATTATTTTCAGTTCACTGAGCC 403 **************************************************** consensus_7359#0 ------------------------------ consensus_7359#1 TCAATTTTTCGTTTTGTCAAAAAAAAAAAA 433 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||