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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1492 fasta sequence
[TCTTTTTTTTTTTTTTTTTTGGAAGCAACTAAGCACTAAGTCTAATAAACCATCAAGAATGCAAAATCAATAAGTTACAACACAC-GTCTTAAATAATTAAATATGGTCATGTCATATGGCAGGGCGAGGTGTTCCCATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAAATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTATCTTTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGCCACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTTTCTTCATCAGATGGAGGGGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGACCGAAAAACTTCTCTTTCTTGAGCATAGCAGTGCATGATGATCGACGTAGCCATACTGAATACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATGCATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTGCTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGAGTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAGTACACTGAGAGGAACAGGCTTGATCTCGCTGTTCCTAGAAGACTCTTCCCTATTATTGGGTAAGGCCTTTTCAATAAATCCTGTCGATGAACTACAAGTGCAGGTACTAAATAGACCGGAACATAGACAGGTACTGCTCTTCCATATGCTTGAAACAAGAATGTAATAAAATGCCCTGCACATGATTGATTTCCATGCACAATCGAGCAAGGGACTTTCATATTTGGATCTAACTTTAGGTCAACACCCACAGACTTGTAGTACTTCTCAATACCCGCTAGGTTAGAGAAAGCAGTGTGATTGACTACTTCTTTCACACCTTGCAGAATAGTAAGATCCTTCCCACCATGCTTATTTAGAAATGCTTTATAAGTTGATGGCAAACTTTCTTGACTTAAAATATAGGCAGATAAAATTTGTGCAGATGAAAGGCACATAAGGAAGATGTCACCATGCGACCAAGTCAAAGGCTTGCAAATATTTCCAAATCTTTTGCTCTTTATTCCACAACGGGATGCAAGGACAGCTGCACGCATAAGAATGTATATTGCCAAGCTAGTATGTTGTGTGCCTGGCCCTGTCAAGAGCATCGAAGGACCAGCAATTAACCCAGCCAATAATGATCTCCACCTTGCTGTTCTCTTACGGCCCCAGATGCCGGCGATGCACTCGTCGACGGAGACGTAGCTTCCGGCGAAGGTCCCCAGGAACAAGCCGTACCTCACCGTCTCCTTCAGCGCTAGCACCACCGCCTCCTCGTTGGTCATGGCGC]
[+] EMBL CB621776 [TCTTTTTTTTTTTTTTTTTTGGAAGCAACTAAGCACTAAGTCTAATAAACCATCAAGAATGCAAAATCAATAAGTTACAACACAC GTCTTAAATAATTAAATATGGTCATGTCATATGGCAGGGCGAGGTGTTCCCATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAAATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTATCTTTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGCCACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTTTCTTCATCAGATGGAGGGGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGACCGAAAAACTTCTCTTTCTTGAGCATAGCAGTGCATGATGATCGACGTAGCCATACTGAATACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATGCATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTGCTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGAGTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAGTACACTGAGAGGAACAGGCTTGATCTCGCTGTTCCTAGAAGACTCTTCC ]
[+] EMBL CB631944 [ CACACNGTCTTAAATAATTAAACATGGTCATGTCATATGGCAGGGCGAGGTGTTCCGATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAAATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTATCTTTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGCCACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTTTCTTCATCAGATGGAGGTGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGACCGAAAAACTTCTCTTTCTTGAGCATAGCAGTGCATGATGATCGACGTAGCCATACTGAATACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATGCATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTGCTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGAGTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAGTACACTGAGAGGAACAGGCTTGATCTCGCTGTTCCTAGAAGACTCTTCCCTATTATTGGGTAAGGCCTTTTCAATAAATCCTGTCGATGAACTACAAGTGCAGGTACTAAATAGACCGGAACATAGACAGGTACTGCTCTTCCATATGCTTGAAACAAGAATGTAATAAAATGCC ]
[-] EMBL CB631943 [ GCTTGATCTCGCTGTTCCTAGAAGACTCTTCCCTATTATTGGGTAAGGCCTTTTCAATAAATCCTGTCGATGAACTACAAGTGCAGGTACTAAATAGACCGGAACATAGACAGGTACTGCTCTTCCATATGCTTGAAACAAGAATGTAATAAAATGCCCTGCACATGATTGATTTCCATGCACAATCGAGCAAGGGACTTTCATATTTGGATCTAACTTTAGGTCAACACCCACAGACTTGTAGTACTTCTCAATACCCGCTAGGTTAGAGAAAGCAGTGTGATTGACTACTTCTTTCACACCTTGCAGAATAGTAAGATCCTTCCCACCATGCTTATTTAGAAATGCTTTATAAGTTGATGGCAAACTTTCTTGACTTAAAATATAGGCAGATAAAATTTGTGCAGATGAAAGGCACATAAGGAAGATGTCACCATGCGACCAAGTCAAAGGCTTGCAAATATTTCCAAATCTTTTGCTCTTTATTCCACAACGGGATGCAAGGACAGCTGCACGCATAAGAATGTATATTGCCAAGCTAGTATGTTGTGTGCCTGGCCCTGTCAAGAGCATCGAAGGACCAGCAATTAACCCAGCCAATAATGATCTCCACCTTGCTGTTCTCTTACGGCCCCAGATGCCGGCGATGCACTCGTCGACGGAGACGTAGCTTCCGGCGAAGGTCCCCAGGAACAAGCCGTACCTCACCGTCTCCTTCAGCGCTAGCACCACCGCCTCCTCGTTGGTCATGGCGC]
consensusID : consensus_7361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[TTTTTTTTTTTAAGTTACAACACACGTCTTAAATAATTAAATATGGTCATGTCATATGGCAGGGCGAGGTGTTCCGATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAAATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTATCATTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGCCACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTTTCTTCATCAGATGGAGGTGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGACCGAAAAACTTCTCTTTCTTGAGCATAGCANTGCATGATGATCGACGTAGCCATACTGAATACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATGCATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTGCTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGAGTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAGTACACTGAGAGGAACAGGCTTGAT]
[+] EMBL CA758976 [TTTTTTTTTTTAAGTTACAACACACGTCTTAAATAATTAAATATGGTCATGTCATATGGCAGGGCGAGGTGTTCCGATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAAATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTATCATTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGCCACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTTTCTTCATCAGATGGAGGTGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGACCGAAAAACTTCTCTTTCTTGAGCATAGCANTGCATGATGATCGACGTAGCCATACTGAATACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATGCATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTGCTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGAGTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAGTACACTGAGAGGAACAGGCTTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7361#0 TCTTTTTTTTTTTTTTTTTTGGAAGCAACTAAGCACTAAGTCTAATAAACCATCAAGAAT 60
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 GCAAAATCAATAAGTTACAACACACGTCTTAAATAATTAAATATGGTCATGTCATATGGC 120
consensus_7361#1 TTTTTTTTTTTAAGTTACAACACACGTCTTAAATAATTAAATATGGTCATGTCATATGGC 60
* **************************************************
consensus_7361#0 AGGGCGAGGTGTTCCCATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAA 180
consensus_7361#1 AGGGCGAGGTGTTCCGATAAATCAATTGAATAAATCTATATACTCTGATGTACCCACTAA 120
*************** ********************************************
consensus_7361#0 ATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTAT 240
consensus_7361#1 ATTCCGCTTGTTGGGATAAACCTACTGTTCAATGCTCATCCTTCTAATGTGCCTATCTAT 180
************************************************************
consensus_7361#0 CTTTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGC 300
consensus_7361#1 CATTGACTAAGATCACAATTTCACTTTAACACTGGAACATCTACATAACTCTCTACAGGC 240
* **********************************************************
consensus_7361#0 CACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTT 360
consensus_7361#1 CACCATGCTACTCAACAAATTTTCTTGGTTCCATCATCGGATGGAAAATCTTTATTGCTT 300
************************************************************
consensus_7361#0 TCTTCATCAGATGGAGGGGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGAC 420
consensus_7361#1 TCTTCATCAGATGGAGGTGGCACACCAAATACCCAGTCAAGGACATTCAGGTACTTGGAC 360
***************** ******************************************
consensus_7361#0 CGAAAAACTTCTCTTTCTTGAGCATAGCAGTGCATGATGATCGACGTAGCCATACTGAAT 480
consensus_7361#1 CGAAAAACTTCTCTTTCTTGAGCATAGCANTGCATGATGATCGACGTAGCCATACTGAAT 420
***************************** ******************************
consensus_7361#0 ACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATG 540
consensus_7361#1 ACCACCACGTCGGCTCGTTTTATCTGCAGAATTGGAGGGCAAAGTCCTGCATCGGTCATG 480
************************************************************
consensus_7361#0 CATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTG 600
consensus_7361#1 CATGTGAAAAAACTCTCAATAGCTCTCGCGAAGCAGTACAGGGCTATCTCGATTCGCCTG 540
************************************************************
consensus_7361#0 CTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGA 660
consensus_7361#1 CTCTTCTTCTCAATTAGCAGTGCCAGACCTGTGGGAAACGTGGCAAGTACAACGAGTGGA 600
************************************************************
consensus_7361#0 GTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAG 720
consensus_7361#1 GTATTGCAGCTCTGGAAGATTCTGAAAAGCAGGCACGTCCATGCCCATGCAGAGGCACAG 660
************************************************************
consensus_7361#0 TACACTGAGAGGAACAGGCTTGATCTCGCTGTTCCTAGAAGACTCTTCCCTATTATTGGG 780
consensus_7361#1 TACACTGAGAGGAACAGGCTTGAT------------------------------------ 684
************************
consensus_7361#0 TAAGGCCTTTTCAATAAATCCTGTCGATGAACTACAAGTGCAGGTACTAAATAGACCGGA 840
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 ACATAGACAGGTACTGCTCTTCCATATGCTTGAAACAAGAATGTAATAAAATGCCCTGCA 900
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 CATGATTGATTTCCATGCACAATCGAGCAAGGGACTTTCATATTTGGATCTAACTTTAGG 960
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 TCAACACCCACAGACTTGTAGTACTTCTCAATACCCGCTAGGTTAGAGAAAGCAGTGTGA 1020
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 TTGACTACTTCTTTCACACCTTGCAGAATAGTAAGATCCTTCCCACCATGCTTATTTAGA 1080
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 AATGCTTTATAAGTTGATGGCAAACTTTCTTGACTTAAAATATAGGCAGATAAAATTTGT 1140
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 GCAGATGAAAGGCACATAAGGAAGATGTCACCATGCGACCAAGTCAAAGGCTTGCAAATA 1200
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 TTTCCAAATCTTTTGCTCTTTATTCCACAACGGGATGCAAGGACAGCTGCACGCATAAGA 1260
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 ATGTATATTGCCAAGCTAGTATGTTGTGTGCCTGGCCCTGTCAAGAGCATCGAAGGACCA 1320
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 GCAATTAACCCAGCCAATAATGATCTCCACCTTGCTGTTCTCTTACGGCCCCAGATGCCG 1380
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 GCGATGCACTCGTCGACGGAGACGTAGCTTCCGGCGAAGGTCCCCAGGAACAAGCCGTAC 1440
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 CTCACCGTCTCCTTCAGCGCTAGCACCACCGCCTCCTCGTTGGTCATGGCGC 1492
consensus_7361#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||