These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1442 fasta sequence [GTAAAAAGATTTGAGAGCCAGCGGAAGAACCTCCAAAAGGATCCATTTTTGACACCTCGCGTGCAGGATTTCGCCGCAATCTCCCAGCGCTGATTGTTACCGCGCCGCACAAAATAGGAGATAAAAACGCAATAAAAACGGAAGAAAAAAAGAATAAAAAGGCAAAATCACATCTTTTCGGTTCCCCCATCTTGTTTTCCTCTCCATTGCTAGCAGCTAATCCTTCCCCCAATCCAATCCGCCGCCGCCGCCATCGCCATGGAGGCGTTGACGAACGCGGAGAAATGCTTCTCCCCTGCCAGGGCGATGTCCCCGCTGCCGCTGGTGAGGCCGCCGCCATCACCGGGCGCTGCCGGTCAGTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCCAATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCTTGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCCGCAGGTGCCTAATTTTTGCGGGAATGGATTCAATCCATGGACTGGGACGCTCCCAGAGAAAAATGGCTTTCCTCGGGGAACTATGGGTTGGGAAGGTGCAGCACATGACCCATCTTACATTGTGAAGAAGATCGTGCGGCTGGAAGTTCCAACAGATGCTTATCCTCATTTCAATTTTATTGGCCGTCTGCTTGGGCCAAGGGGAAACTCACTGAAGAGAGTTGAAGCCTCAACAGGTTGCCGGGTTTTCATCAGAGGGAAGGGCTCCATAAAAGATCCCATCAAGGAGGAACAATTGAAGGGAAGGCCTGGCTATGAACATTTGAGTGATCCGACACATATCTTGATTGAAGCTGAATTACCTGCTGATGTCATTGACACAAGACTAGCACAAGCTCAAGAAATACTAGAGGACTTGTTGAAACCAGTGGAGGAGTCACAAGACTTTCTCAAGAGGCAACAGCTTAGAGAGCTTGCTGTGCTGAACTCCACATAT-CGAGAGGATAGCCCCCATCAAAATGGCAGTGCCTCTCCCTTCAGCAATGGTAGCACAAAACTCGGGAAGCAATGAC-TTTGTGATTCCAACCCCCTTGATCCCTCCAAAGGCGCTCTAATCAACTTGCTTTCATGACATAGAATCCTGCTTTACATTGCATAGATTTGATGATGATGATGAAGCTTCTGTGAGACTATGATGTTGGAATTTTGCTATTGCTAGCTGCTGAATTTTGATACTCCCCCTTGATGACATTAGCTCGTGGCTGAGGTGACTAGTTGAATCTCCATGGCTGTAAAATGAGAATGTTCATTTGTTTCTTTACCATCGACTGTTAGTTCTGATGACTATGGTGACAGTGCACTGAGTTGCCAAAGTTTTACCTAAGGTAGTAGAAGAATACCAGA] [+] EMBL AK063274 [GTAAAAAGATTTGAGAGCCAGCGGAAGAACCTCCAAAAGGATCCATTTTTGACACCTCGCGTGCAGGATTTCGCCGCAATCTCCCAGCGCTGATTGTTACCGCGCCGCACAAAATAGGAGATAAAAACGCAATAAAAACGGAAGAAAAAAAGAATAAAAAGGCAAAATCACATCTTTTCGGTTCCCCCATCTTGTTTTCCTCTCCATTGCTAGCAGCTAATCCTTCCCCCAATCCAATCCGCCGCCGCCGCCATCGCCATGGAGGCGTTGACGAACGCGGAGAAATGCTTCTCCCCTGCCAGGGCGATGTCCCCGCTGCCGCTGGTGAGGCCGCCGCCATCACCGGGCGCTGCCGGTCAGTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCCAATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCTTGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCCGCAGGTGCCTAATTTTTGCGGGAATGGATTCAATCCATGGACTGGGACGCTCCCAGAGAAAAATGGCTTTCCTCGGGGAACTATGGGTTGGGAAGGTGCAGCACATGACCCATCTTACATTGTGAAGAAGATCGTGCGGCTGGAAGTTCCAACAGATGCTTATCCTCATTTCAATTTTATTGGCCGTCTGCTTGGGCCAAGGGGAAACTCACTGAAGAGAGTTGAAGCCTCAACAGGTTGCCGGGTTTTCATCAGAGGGAAGGGCTCCATAAAAGATCCCATCAAGGAGGAACAATTGAAGGGAAGGCCTGGCTATGAACATTTGAGTGATCCGACACATATCTTGATTGAAGCTGAATTACCTGCTGATGTCATTGACACAAGACTAGCACAAGCTCAAGAAATACTAGAGGACTTGTTGAAACCAGTGGAGGAGTCACAAGACTTTCTCAAGAGGCAACAGCTTAGAGAGCTTGCTGTGCTGAACTCCACATAT CGAGAGGATAGCCCCCATCAAAATGGCAGTGCCTCTCCCTTCAGCAATGGTAGCACAAAACTCGGGAAGCAATGAC TTTGTGATTCCAACCCCCTTGATCCCTCCAAAGGCGCTCTAATCAACTTGCTTTCATGACATAGAATCCTGCTTTACATTGCATAGATTTGATGATGATGATGAAGCTTCTGTGAGACTATGATGTTGGAATTTTGCTATTGCTAGCTGCTGAATTTTGATACTCCCCCTTGATGACATTAGCTCGTGGCTGAGGTGACTAGTTGAATCTCCATGGCTGTAAAATGAGAATGTTCATTTGTTTCTTTACCATCGACTGTTAGTTCTGATGACTATGGTGACAGTGCACTGAGTTGCCAAAGTTTTACCTAAGGTAGTAGAAGAATACCAGA] [+] EMBL OSS11056A [ CTCTCCATTGCTAGCAGCTAATCCTTCCCCCAATCCAATCCGCCGCCGCCGCCATCGCCATGGAGGCGTTGACGAACGCGGAGAAATGCTTCTCCCCTGCCAGGGCGATGTCCCCGCTGCCGCTGGTGAGGCCGCCGCCATCACCGGGCGCTGCCGGTCAGTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCCAATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCTTGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCA ] [+] EMBL BI807197 [ CATATGCGAGAGGATAGCCCCCGTC AAATGGCAGTGCCTCTCCCTNCAGC ATGGTAGCAC AAACTCGGGAAGCAATGACNTTTGTGATTCCAACCCCCTTGATCCCTCCAAAGGCGCTCTAATCAACTTGCTTTCATGACATAGAATCCGGCTTTACCTTGCATAGATTTGATGATGATGATGAAGCTTCTGTGAGACTATGATGTTGGAATTTTGCTATTGCTAGCTGCTGAATTTTGATACTCCCCCTTGATGACATTAGCTCGTGGCTGAGGTGACTAGTTGAATCTCCATGGCTGTAAAATGAGAATGTTCATTTGTTTCTTTACCATCGACTGTTAGTTCTGATGACTAaaaaaaaaa ] consensusID : consensus_7365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [CCAAGATCGAGATGGCCCGTGCACAGCTGGTGTTGGTCGCCCNCGTGGCAGCGGCTCTGCTCCTGGCGGGCCCACACACCACCATGGCCGCCATCAGNTGCGGCCCGGNCAACTGTNCCCGTTNCNGCTTGTGAGGCCTACGGCATCACCGGGCGCTGCCGGTCAGTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCCAATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCTTGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCCGCAGTGC] [+] EMBL OSS11055A [CCAAGATCGAGATGGCCCGTGCACAGCTGGTGTTGGTCGCCCNCGTGGCAGCGGCTCTGCTCCTGGCGGGCCCACACACCACCATGGCCGCCATCAGNTGCGGCCCGGNCAACTGTNCCCGTTNCNGCTTGTGAGGCCTACGGCATCACCGGGCGCTGCCGGTCAGTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCCAATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCTTGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCCGCAGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7365#0 GTAAAAAGATTTGAGAGCCAGCGGAAGAACCTCCAAAAGGATCCATTTTTGACACCTCGC 60 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 GTGCAGGATTTCGCCGCAATCTCCCAGCGCTGATTGTTACCGCGCCGCACAAAATAGGAG 120 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 ATAAAAACGCAATAAAAACGGAAGAAAAAAAGAATAAAAAGGCAAAATCACATCTTTTCG 180 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 GTTCCCCCATCTTGTTTTCCTCTCCATTGCTAGCAGCTAATCCTTCCCCCAATCCAATCC 240 consensus_7365#1 ---CCAAGATCGAGATGGCCCGTGCACAGCTGGT-GTTGGTCGCCCNCGTGG-CAGCGGC 55 ** *** * * ** * ** *** * * * ** * * * * consensus_7365#0 GCCGCCGCCGCCATCGCCATGGAGGCGTTGACGAACGCGGAGAAATGCTTCTCCCCTGCC 300 consensus_7365#1 TCTGCTCCTGGCGGGCCCAC--ACACCACCATGGCCGCCATCAGNTGCG--------GCC 105 * ** * * * *** * * * * *** * *** *** consensus_7365#0 AGGGCGA-TGTCCCCGCTGCCGCTGGTGAGGCCGCCGCCATCACCGGGCGCTGCCGGTCA 359 consensus_7365#1 CGGNCAACTGTNCCCGTTNCNGCTTGTGAGGCCTACGGCATCACCGGGCGCTGCCGGTCA 165 ** * * *** **** * * *** ******** ** ********************** consensus_7365#0 GTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCC 419 consensus_7365#1 GTACCTGGCAGAGTTGCTGCAGGAACAGCAGAAGATTGGTCCCTTTGTGCAGGTGCTCCC 225 ************************************************************ consensus_7365#0 AATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCT 479 consensus_7365#1 AATCTGCGGCAGGCTGTTGAATCAAGAGATAATGAGAATGTCTGCTATTGTTTCGCACCT 285 ************************************************************ consensus_7365#0 TGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCC 539 consensus_7365#1 TGGAGTAAGGGAACATGATAGGCTGCCCATTGCAAGTCCAAACCAGATGCATCCGTTGCC 345 ************************************************************ consensus_7365#0 GCAGGTGCCTAATTTTTGCGGGAATGGATTCAATCCATGGACTGGGACGCTCCCAGAGAA 599 consensus_7365#1 GCAG-TGC---------------------------------------------------- 352 **** *** consensus_7365#0 AAATGGCTTTCCTCGGGGAACTATGGGTTGGGAAGGTGCAGCACATGACCCATCTTACAT 659 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 TGTGAAGAAGATCGTGCGGCTGGAAGTTCCAACAGATGCTTATCCTCATTTCAATTTTAT 719 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 TGGCCGTCTGCTTGGGCCAAGGGGAAACTCACTGAAGAGAGTTGAAGCCTCAACAGGTTG 779 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 CCGGGTTTTCATCAGAGGGAAGGGCTCCATAAAAGATCCCATCAAGGAGGAACAATTGAA 839 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 GGGAAGGCCTGGCTATGAACATTTGAGTGATCCGACACATATCTTGATTGAAGCTGAATT 899 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 ACCTGCTGATGTCATTGACACAAGACTAGCACAAGCTCAAGAAATACTAGAGGACTTGTT 959 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 GAAACCAGTGGAGGAGTCACAAGACTTTCTCAAGAGGCAACAGCTTAGAGAGCTTGCTGT 1019 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 GCTGAACTCCACATATCGAGAGGATAGCCCCCATCAAAATGGCAGTGCCTCTCCCTTCAG 1079 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 CAATGGTAGCACAAAACTCGGGAAGCAATGACTTTGTGATTCCAACCCCCTTGATCCCTC 1139 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 CAAAGGCGCTCTAATCAACTTGCTTTCATGACATAGAATCCTGCTTTACATTGCATAGAT 1199 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 TTGATGATGATGATGAAGCTTCTGTGAGACTATGATGTTGGAATTTTGCTATTGCTAGCT 1259 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 GCTGAATTTTGATACTCCCCCTTGATGACATTAGCTCGTGGCTGAGGTGACTAGTTGAAT 1319 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 CTCCATGGCTGTAAAATGAGAATGTTCATTTGTTTCTTTACCATCGACTGTTAGTTCTGA 1379 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 TGACTATGGTGACAGTGCACTGAGTTGCCAAAGTTTTACCTAAGGTAGTAGAAGAATACC 1439 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 AGA 1442 consensus_7365#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||