|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1219 fasta sequence
[CCCCACCTCCTCGCCTCCCACACATCGCTCCCGCGCATTCCCACCGCCCGCCTCCCTCCCTCCATCTGCCGCCGAGGAGTTCCCCGATCGCGCGCGCGCGTAGCGTAGCGTAGCCTAGGCGGCGGCGGCCGGGGCCGGAGGGGGGGACATGGCGCCGCAGAAGAGGACGACGCTGGTCTACAGCTTCGTGGCGCGCGGCGCCGTCGTGCTGGCCGACCACGCCGAGGTCTCCGGCAACTTCGCCTCCGTCGCCGCGCAGTGCCTCCAGAAGCTCCCCTCCACCAACAACCGCCACAGCTACAACTGCGACGGCCACACCTTCAACTACCATGTCCACGACGGATTCACATACTGTGTTGTTGCTACCGAGTCTGCTGGTCGGCAACTTCCAGTTGGCTTCATTGAGAGAGTAAAGGAAGATTTTTCCAAGAAATATAGTGGAGGAAAAGCAAAGAATGCTACCGCGAATAGCCTCAAGCGAGAATATGGGCCTAAACTTAAAGAACACATGAAGTACTGTGATGCGCACCCTGAGGAGATTGACAAGCTTGCCAAAGTGAAGGCTCAGGTTACAGAGGTCAAAGGAGTTATGATGCAAAACATTGAAAAGGTTTTAGATCGTGGTGAGAAAATTGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGAAAGATGTGGTGGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATTGATCCTCGTCATCATCTTGACGGTTTGCCGTGACTTGAACTGCTGGTAACACACAACACATATACGGCTCACCTCACCTAATATTTGCTATAGCCTTCAGTTCTGATAATGCTGAAGAAAGGGCACACATAAAAAAGGAGAAAGGGCGTGTTAGAGGGTTATTGTTTTGAAACAAAACTGTCACATAGGGAGTGCGAAATCACCATGAATCTATCAGCTTGATTGATGGTGTTGCTAGCTCATCAACTTTTATTTAGTTATTTCTGGACCCAAAGGCTCACAATATATAATAGAGCCCTCTCCTGTGCTTGTACAGGGATGTCCATATTCTTTCTACAATGTAATATTACTAGTATTCTTGTAATTCAGAAGAGGTAATTTTGCATGTTTGCTTCAATATATTTCGTACAGAGCTAATAANAAAAAAAAAAAAAAAAAAAAAAAAANA]
[+] EMBL AK069165 [CCCCACCTCCTCGCCTCCCACACATCGCTCCCGCGCATTCCCACCGCCCGCCTCCCTCCCTCCATCTGCCGCCGAGGAGTTCCCCGATCGCGCGCGCGCGTAGCGTAGCGTAGCCTAGGCGGCGGCGGCCGGGGCCGGAGGGGGGGACATGGCGCCGCAGAAGAGGACGACGCTGGTCTACAGCTTCGTGGCGCGCGGCGCCGTCGTGCTGGCCGACCACGCCGAGGTCTCCGGCAACTTCGCCTCCGTCGCCGCGCAGTGCCTCCAGAAGCTCCCCTCCACCAACAACCGCCACAGCTACAACTGCGACGGCCACACCTTCAACTACCATGTCCACGACGGATTCACATACTGTGTTGTTGCTACCGAGTCTGCTGGTCGGCAACTTCCAGTTGGCTTCATTGAGAGAGTAAAGGAAGATTTTTCCAAGAAATATAGTGGAGGAAAAGCAAAGAATGCTACCGCGAATAGCCTCAAGCGAGAATATGGGCCTAAACTTAAAGAACACATGAAGTACTGTGATGCGCACCCTGAGGAGATTGACAAGCTTGCCAAAGTGAAGGCTCAGGTTACAGAGGTCAAAGGAGTTATGATGCAAAACATTGAAAAGGTTTTAGATCGTGGTGAGAAAATTGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGAAAGATGTGGTGGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATTGATCCTCGTCATCATCTTGACGGTTTGCCGTGACTTGAACTGCTGGTAACACACAACACATATACGGCTCACCTCACCTAATATTTGCTATAGCCTTCAGTTCTGATAATGCTGAAGAAAGGGCACACATAAAAAAGGAGAAAGGGCGTGTTAGAGGGTTATTGTTTTGAAACAAAACTGTCACATAGGGAGTGCGAAATCACCATGAATCTATCAGCTTGATTGATGGTGTTGCTAGCTCATCAACTTTTATTTAGTTATTTCTGGACCCAAAGGCTCACAATATATAATAGAGCCCTCTCCTGTGCTTGTACAGGGATGTCCATATTCTTTCTACAATGTAATATTACTAGTATTCTTGTAATTCAGAAGAGGTAATTTTGCATGTTTGCTTCAATATATTTCGTACAGAGCTAAT ]
[+] EMBL C99511 [ GATCCTCGACATCATCTTGACGGTTTNCCGTGACTTGAACTGCTGGTAACNCACAACACATNTACGGCTCACCTCACCTAATATTTGCTATANCCTTCAGTTCTGATAATGCTGAAGAANGGGCACACNTAAAAAAGGAGAAAGGGCGTGTTAGAGGGTTATTGTTTTGAAACAAAACTGTCACATAGGGAGTGCGAAATCACCATGAATCTATCAGCTTGATTGATGGTGTTGCTAGCTCATCAACTTTTATTTAGTTATTTCTGGACCCAAAGGCTCACAATATATAATAGAGCCCTCTCCTGTGCTTGTACAGGGATGTCCATATTCTTTCTACAATGTAATATTACTAGTATTCTTGTAATTCAGAAGAGGTAATTTTGCATGTTTGCTTCAATATATTTCGTACAGAGCTAAAAANAAAAAAAAAAAAAAAAAAAAAAAAANA]
consensusID : consensus_7378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 425 fasta sequence
[TCATCTGTTGCATCAGGTTTTAGATCGTGGTGAGAAAATTGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGTTTCATCATTTGCTCTCACATTGAATCATAATCTTATTTCCTCTTAATTGCACAATATGTGGTCTATTGGACATGATGATATTCATTCTTTCATTTATAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGAAAGATGTGGTGGGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATTGNTCCTCGTCATCATCTTGACGGGTTTGCCGTGACTTGAACCTGCTGGNAACACACAACACATATACGGGCT-CACCTCACC-TAATATTTTGCTATAGGCCTTCAGGTCTGATAATGCTGAAGGAAGGGGCNCACATAAATNTGGGG]
[+] EMBL AU164139 [TCATCTGTTGCATCAGGTTTTAGATCGTGGTGAGAAAATTGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGTTTCATCATTTGCTCTCACATTGAATCATAATCTTATTTCCTCTTAATTGCACAATATGTGGTCTATTGGACATGATGATATTCATTCTTTCATTTATAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGAAAGATGTGGTGGGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATTGNTCCTCGTCATCATCTTGACGGGTTTGCCGTGACTTGAACCTGCTGGNAACACACAACACATATACGGGCT CACCTCACC TAATATTTTGCTATAGGCCTTCAGGTCTGATAATGCTGAAGGAAGGGGCNCACATAAATNTGGGG]
[+] EMBL C73843 [TCATCTGTTGCATCAGGTTTTAGATCGTGGTGAGAAAATTGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGTTTCATCATTTGCTCTCACATTGAATCATAATCTTATTTCCTCTTAATTGCACAATATGTGGTCTATTGGACATGATGATATTCATTCTTTCATTTATAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGAAAGATGTGGT GGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATTGATCCNCGTCATCATCTTGAC GGTTTGCCGTGACTTGAACCTGCTGGTAACACACAACACATATACGGGGTNAACCTCACCNAAATAATTTGCTATAGGCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7378#0 CCCCACCTCCTCGCCTCCCACACATCGCTCCCGCGCATTCCCACCGCCCGCCTCCCTCCC 60
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 TCCATCTGCCGCCGAGGAGTTCCCCGATCGCGCGCGCGCGTAGCGTAGCGTAGCCTAGGC 120
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 GGCGGCGGCCGGGGCCGGAGGGGGGGACATGGCGCCGCAGAAGAGGACGACGCTGGTCTA 180
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 CAGCTTCGTGGCGCGCGGCGCCGTCGTGCTGGCCGACCACGCCGAGGTCTCCGGCAACTT 240
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 CGCCTCCGTCGCCGCGCAGTGCCTCCAGAAGCTCCCCTCCACCAACAACCGCCACAGCTA 300
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 CAACTGCGACGGCCACACCTTCAACTACCATGTCCACGACGGATTCACATACTGTGTTGT 360
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 TGCTACCGAGTCTGCTGGTCGGCAACTTCCAGTTGGCTTCATTGAGAGAGTAAAGGAAGA 420
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 TTTTTCCAAGAAATATAGTGGAGGAAAAGCAAAGAATGCTACCGCGAATAGCCTCAAGCG 480
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 AGAATATGGGCCTAAACTTAAAGAACACATGAAGTACTGTGATGCGCACCCTGAGGAGAT 540
consensus_7378#1 -----------------TCATCTGTTGCATCAGGTTTTAGATCGTGG----TGAGAAAAT 39
* * *** * ** * * * **** * **
consensus_7378#0 TGACAAGCTTGCC---AAAGTGAAGGCTCAGGTTACAGAGGTCAAAGGAGTTATGAT-GC 596
consensus_7378#1 TGAGCTGCTTGTCGACAAGACAGAGGATCTCCGCTCACAGGTTTCATCATTTGCTCTCAC 99
*** ***** * ** *** ** ** **** * * ** * *
consensus_7378#0 AAAACATTGAAAAGGTTTTAGATCGTGGTGAGAAAAT---TGAGCTGCTTGTCGACAAGA 653
consensus_7378#1 ATTGAATCATAATCTTATTTCCTCTTAATTGCACAATATGTGGTCTATTGGACATGATGA 159
* ** ** * ** ** * * * *** ** ** * * * * **
consensus_7378#0 CAGAGGATCTC-CGCTCACAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGA 712
consensus_7378#1 TATTCATTCTTTCATTTATAGGCACAAGACTTTAGAAAAGCGGGAACAAAGATTCGGCGA 219
* *** * * * *****************************************
consensus_7378#0 AAGATGTGGTGGG-AGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATT 771
consensus_7378#1 AAGATGTGGTGGGGAGAATATGAAGATGAAGCTCATTGTTTTCGGCATTGTAGTTGCATT 279
************* **********************************************
consensus_7378#0 GATCCTCGTCATCATCTTGACGG-TTTGCCGTGACTTGAAC-TGCTGGTAACACACAACA 829
consensus_7378#1 GNTCCTCGTCATCATCTTGACGGGTTTGCCGTGACTTGAACCTGCTGGNAACACACAACA 339
* ********************* ***************** ****** ***********
consensus_7378#0 CATATACGG-CTCACCTCACCTAATATTT-GCTATAG-CCTTCAGTTCTGATAATGCTGA 886
consensus_7378#1 CATATACGGGCTCACCTCACCTAATATTTTGCTATAGGCCTTCAGGTCTGATAATGCTGA 399
********* ******************* ******* ******* **************
consensus_7378#0 AGAAAGGG-CACACATAAAAAAGGAGAAAGGGCGTGTTAGAGGGTTATTGTTTTGAAACA 945
consensus_7378#1 AGGAAGGGGCNCACATAAATNTGGGG---------------------------------- 425
** ***** * ******** ** *
consensus_7378#0 AAACTGTCACATAGGGAGTGCGAAATCACCATGAATCTATCAGCTTGATTGATGGTGTTG 1005
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 CTAGCTCATCAACTTTTATTTAGTTATTTCTGGACCCAAAGGCTCACAATATATAATAGA 1065
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 GCCCTCTCCTGTGCTTGTACAGGGATGTCCATATTCTTTCTACAATGTAATATTACTAGT 1125
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 ATTCTTGTAATTCAGAAGAGGTAATTTTGCATGTTTGCTTCAATATATTTCGTACAGAGC 1185
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 TAATAANAAAAAAAAAAAAAAAAAAAAAAAAANA 1219
consensus_7378#1 ----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||