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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1607 fasta sequence
[ACTACCCCACCCAACACCATCATCTGATCCATTTCCACAAAGCTTCTGAAAGCCAACACATACCTCACTGCCTTTGCCTTCTTCTCAGCTTCAAGAAGCCTTTTGAGCTTGTGATTTCTACATCATCCATCCATTTCATCACCATGATCCAAGAACTCCTTGGAGGGACAACCATGGACCAGCTCAAGGGCGCCAGCGCTCTGAACCACGCCTCCCTGCCGGTGGTGCTGCAGCCTATCGTGTCCAACCCGTCGCCCACGTCGTCGTCGTCGACGTCGTCGCGCTCGTCGGCGCAGGCGACGCAGCAGAGGTCGTCGTCGGCGACCTCGTCGCCGCACGGGCAGGGGCAGGGTGGCGGCGCGGCGGAGCAGGCGCCGCTGCGGTGCCCGCGGTGCAACTCGTCGAACACCAAGTTCTGCTACTACAACAACTACAACCTCACCCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGGTACTGGACCAAGGGCGGCGCGCTCCGCAACGTCCCCATCGGCGGCGGGTGCCGCAAGCCGCGCCCCATGCCGGCGCCGGTCGCCAAGCCGCCCATGTCTTGCAAGGCCGCGCCGCCGCTCGGCCTCGGCGGCGGGCCAGTGTCCTGGGCCTCCGGGCAGCAGGCCGCCACCGCGCACCTCATGGCGCTGCTCAACAGCGCCAGGGGAGTGCAGGGCCACGGCGGCAGCAATGTCCACCGGCTTCTTGGGCTGGACACCATGGGTCACCTCCAGATCCTGCCAGGCGCTCCCAATGGCGCCGGCGCCGGCACGGCGGCGTCGCTCTGGCCACAGTCCGCGCCGCGGCCGGTCACTCCACCGCCGCCGCACATGGACTCCCAGCTCGGCATGGGGACGCTGGGCCACCACGACGTGCTGTCGAGCCTCGGCCTCAAGCTGCCCTCGTCGGCGTCGTCCTCGCCGGCGGCGAGCTACTACAGCGACCAGCTGCACGCGGTGGTGAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACCGCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCCGCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCGCCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCCACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCATGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTGTGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACTGGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTATTAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCATAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTTACATTCCCTGCAAGCTCGTGGACGTACTTA]
[+] EMBL AK063380 [ACTACCCCACCCAACACCATCATCTGATCCATTTCCACAAAGCTTCTGAAAGCCAACACATACCTCACTGCCTTTGCCTTCTTCTCAGCTTCAAGAAGCCTTTTGAGCTTGTGATTTCTACATCATCCATCCATTTCATCACCATGATCCAAGAACTCCTTGGAGGGACAACCATGGACCAGCTCAAGGGCGCCAGCGCTCTGAACCACGCCTCCCTGCCGGTGGTGCTGCAGCCTATCGTGTCCAACCCGTCGCCCACGTCGTCGTCGTCGACGTCGTCGCGCTCGTCGGCGCAGGCGACGCAGCAGAGGTCGTCGTCGGCGACCTCGTCGCCGCACGGGCAGGGGCAGGGTGGCGGCGCGGCGGAGCAGGCGCCGCTGCGGTGCCCGCGGTGCAACTCGTCGAACACCAAGTTCTGCTACTACAACAACTACAACCTCACCCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGGTACTGGACCAAGGGCGGCGCGCTCCGCAACGTCCCCATCGGCGGCGGGTGCCGCAAGCCGCGCCCCATGCCGGCGCCGGTCGCCAAGCCGCCCATGTCTTGCAAGGCCGCGCCGCCGCTCGGCCTCGGCGGCGGGCCAGTGTCCTGGGCCTCCGGGCAGCAGGCCGCCACCGCGCACCTCATGGCGCTGCTCAACAGCGCCAGGGGAGTGCAGGGCCACGGCGGCAGCAATGTCCACCGGCTTCTTGGGCTGGACACCATGGGTCACCTCCAGATCCTGCCAGGCGCTCCCAATGGCGCCGGCGCCGGCACGGCGGCGTCGCTCTGGCCACAGTCCGCGCCGCGGCCGGTCACTCCACCGCCGCCGCACATGGACTCCCAGCTCGGCATGGGGACGCTGGGCCACCACGACGTGCTGTCGAGCCTCGGCCTCAAGCTGCCCTCGTCGGCGTCGTCCTCGCCGGCGGCGAGCTACTACAGCGACCAGCTGCACGCGGTGGTGAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACCGCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCCGCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCGCCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCCACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCATGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTGTGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACTGGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTATTAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCATAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTTACATTCCCTGCAAGCTCGTGGACGTACTTA]
[+] EMBL C27756 [ GCTACTACAACAACTACAACCTCACCCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGGTACTGGACCAAGGGCGGCGCGCTCCGCAACGTCCCCATCGGCGGCGGGTGCCGCAAGCNGCGCCCCATGCCGGCGCCGGTCGCCAAGCCGCCCATGTTTTGCAAGGCCGCGCCGCCGCTCGGCCTCGGCGGCGGGCCAGTNTCCTGGGCCTCCGGGCAGCAGGCCGCCACCGCGCACCTAATGGCGCTGCTCAACAGCG CAGGGGAGTGCAGGGCCANGG ]
consensusID : consensus_7385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence
[GTCGGGCGTCGTCCTCGCCGGCGGCAAGTTACTACAGCGACCAGCTGCACCCGGTGGTAAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACCGCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCCGCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCGCCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCCACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCATGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTGTGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACTGGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTATTAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCATAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTTACATTCCCTGCAAAAAAAAAAAAAAAA]
[+] EMBL AU081004 [GTCGGGCGTCGTCCTCGCCGGCGGCAAGTTACTACAGCGACCAGCTGCACCCGGTGGTAAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACCGCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCCGCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCGCCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCCACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCATGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTGTGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACTGGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTATTAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCATAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTTACATTCCCTGCAAAAAAAAAAAAAAAA]
[+] EMBL AU081006 [ tnAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCATAAATGGGGTTGTACTATNAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTTACATTCCCTGCAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7385#0 ACTACCCCACCCAACACCATCATCTGATCCATTTCCACAAAGCTTCTGAAAGCCAACACA 60
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 TACCTCACTGCCTTTGCCTTCTTCTCAGCTTCAAGAAGCCTTTTGAGCTTGTGATTTCTA 120
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 CATCATCCATCCATTTCATCACCATGATCCAAGAACTCCTTGGAGGGACAACCATGGACC 180
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 AGCTCAAGGGCGCCAGCGCTCTGAACCACGCCTCCCTGCCGGTGGTGCTGCAGCCTATCG 240
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 TGTCCAACCCGTCGCCCACGTCGTCGTCGTCGACGTCGTCGCGCTCGTCGGCGCAGGCGA 300
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 CGCAGCAGAGGTCGTCGTCGGCGACCTCGTCGCCGCACGGGCAGGGGCAGGGTGGCGGCG 360
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 CGGCGGAGCAGGCGCCGCTGCGGTGCCCGCGGTGCAACTCGTCGAACACCAAGTTCTGCT 420
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 ACTACAACAACTACAACCTCACCCAGCCGCGCCACTTCTGCAAGACGTGCCGCCGGTACT 480
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 GGACCAAGGGCGGCGCGCTCCGCAACGTCCCCATCGGCGGCGGGTGCCGCAAGCCGCGCC 540
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 CCATGCCGGCGCCGGTCGCCAAGCCGCCCATGTCTTGCAAGGCCGCGCCGCCGCTCGGCC 600
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 TCGGCGGCGGGCCAGTGTCCTGGGCCTCCGGGCAGCAGGCCGCCACCGCGCACCTCATGG 660
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 CGCTGCTCAACAGCGCCAGGGGAGTGCAGGGCCACGGCGGCAGCAATGTCCACCGGCTTC 720
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 TTGGGCTGGACACCATGGGTCACCTCCAGATCCTGCCAGGCGCTCCCAATGGCGCCGGCG 780
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 CCGGCACGGCGGCGTCGCTCTGGCCACAGTCCGCGCCGCGGCCGGTCACTCCACCGCCGC 840
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 CGCACATGGACTCCCAGCTCGGCATGGGGACGCTGGGCCACCACGACGTGCTGTCGAGCC 900
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 TCGGCCTCAAGCTGCCCTCGTCGG-CGTCGTCCTCGCCGGCGGCGAGCTACTACAGCGAC 959
consensus_7385#1 -------------------GTCGGGCGTCGTCCTCGCCGGCGGCAAGTTACTACAGCGAC 41
***** ******************* ** ************
consensus_7385#0 CAGCTGCACGCGGTGGTGAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACC 1019
consensus_7385#1 CAGCTGCACCCGGTGGTAAGCAACGCGGGGCGCCCCCAGGCGCCGTACGACGTCGCCACC 101
********* ******* ******************************************
consensus_7385#0 GCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCC 1079
consensus_7385#1 GCGTCCCTCCCTTGCACCACCGCGGTGACCTCACTCCCGTCGGCGCTGTCGAGCGTCTCC 161
************************************************************
consensus_7385#0 GCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCG 1139
consensus_7385#1 GCCGCCGCGCCGACCAGCAACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCG 221
************************************************************
consensus_7385#0 CCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCC 1199
consensus_7385#1 CCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTCGGTGCCGTGGCCGGACTTGCCC 281
************************************************************
consensus_7385#0 ACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCA 1259
consensus_7385#1 ACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAGCA 341
************************************************************
consensus_7385#0 TGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTG 1319
consensus_7385#1 TGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTG 401
************************************************************
consensus_7385#0 TGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACT 1379
consensus_7385#1 TGGTTTCGGTTAATCAGTGTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACT 461
************************************************************
consensus_7385#0 GGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTAT 1439
consensus_7385#1 GGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACCTTTTTTACTGTTTACTTATTAT 521
************************************************************
consensus_7385#0 TAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCA 1499
consensus_7385#1 TAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATGCA 581
************************************************************
consensus_7385#0 TAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCA 1559
consensus_7385#1 TAGATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCA 641
************************************************************
consensus_7385#0 TGTATGGATGTAAGGTTTACATTCCCTGCAAGCTCGTGGACGTACTTA 1607
consensus_7385#1 TGTATGGATGTAAGGTTTACATTCCCTGCAAAAAAAAAAAAAAAA--- 686
******************************* * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||