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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1580 fasta sequence
[CTGTCCGTGGGTCTCGACTCCATCGGTCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGATGCTTCATCACCAGATTGCACACCTGGATACGTTCCAGCTGCATGTTAATAATGTGTATCGTTGGGGTCAACATGCATCTAGGTGGATTCGTCGCAGCATCAAGTATAACACCAAGGTTCCTGGCATTCCTCGCCCGGGATTGAGCTGCAGTTCTTGGAGCCTCAAAAGACTACATCTTTCTAACATTTGTGTGGATGATCTGTTCGCAAAGCACATTAGCTCAATGTGCTGCTCTCTGGAGGATTTGAATCTCAAAGGATGCAGATTTGCATTCAATGAGATCACGTCCCACTCACTGAAGAGCTTGGTGATCGACAGCTGCGACAGCAAGCTTTGTCCTTCCAAACTGGTTGTCACGGCTCCTGCCATTGCCTCCCTGTGCCTTATTGTGAAATTGTGGTTTTTCCCCGGCGGTCTCATTGTAAATGAAATGCCATTCCTTTCGAAAGCATCCATTCTTGTTTCAGCCACCTACGACGGAAAGAACTTCCAACACAATCAAAGCAAGTTTCTTGGTAGCCTCTGTAATGTGACAACTTTAGAGCTGTCAGGTTTTCAGACAATGATTATACCTGAGGAACCGGTTGAGTTACCAGAATTCAAGAACCTCAAGATCTTATCCCTTGACAAGTGTGATCTTAGTGACAACTTCCAGTTATTGAAGCACTTTCTGCAGAACTCGCCTAATTTGGAGAAGCTCACGTTGCGGCTTTGCGAGCTGCCAAAGGATTCTAAGAAAAGGAAAGGGAAGGCCAAGGCGAAGAAAACACGTTTGGTGGATATCCGGTGTGAGAACCTAAAGCTTACTGAAATCATCTACGATGCTGATGATGTCCTCCAACTGGTCGGGCTTTTGCTGAACGATTCAGCAAATCTTCCTAAGAACAACATAAAACTCAGCAAAGTTGATCGTTAGTATGGTTAGTTCAGGCCCTCTTTTGTGATGACCGATTCTTAGGCCTCTCCTGAATTCACATGTCTTGTCTGTCTTCCGATGCACTGTCAGTTGTGTAGTTGAAATGCACCTATCTTTTGACTTGTCTAATCGGTTTAAGACTGCTCTGTTCTGTTAGCTATTGCATGTGTTCTTGCGCGCTGTGATGCTAGGTTAATGGAGTGATAGCGATTGATACTTATGGCTATGAACAGACCAATTTCTTACTATA]
[+] EMBL CB670635 [CTGTCCGTGGGTCTCGACTCCATCGGTCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGATGCTTCATCACCAGATTGCACACCTGGATACGTTCCAGCTGCATGTTAATAATGTGTATCGTTGGGGTCAACATGCATCTAGGTGGATTCGTCGCAGCATCAAGTATAACACCAAGGTTCCTGGCATTCCTCGCCCGGGATTGAGCTGCAGTTCTTGGAGCCTCAAAAGACTACATCTTTCTAACATTTGTGTGGATGATCTGTTCGCAAAGCACATTAGCTCAATGTGCTGCTCTCTGGAGGATTTGAATCTCAAAGGATGCAGATTTGCATTCAATGAGATCACGTCCCACTCACTGAAGAGCTTGGTGATCGACAGCTGCGACAGCAAGCTTTGTCCTTTCAAACTGGTTGTCACGGCTCCTGCCATT ]
[+] EMBL AK071669 [ GTCTCGACTCCATCGGTCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGATGCTTCATCACCAGATTGCACACCTGGATACGTTCCAGCTGCATGTTAATAATGTGTATCGTTGGGGTCAACATGCATCTAGGTGGATTCGTCGCAGCATCAAGTATAACACCAAGGTTCCTGGCATTCCTCGCCCGGGATTGAGCTGCAGTTCTTGGAGCCTCAAAAGACTACATCTTTCTAACATTTGTGTGGATGATCTGTTCGCAAAGCACATTAGCTCAATGTGCTGCTCTCTGGAGGATTTGAATCTCAAAGGATGCAGATTTGCATTCAATGAGATCACGTCCCACTCACTGAAGAGCTTGGTGATCGACAGCTGCGACAGCAAGCTTTGTCCTTCCAAACTGGTTGTCACGGCTCCTGCCATTGCCTCCCTGTGCCTTATTGTGAAATTGTGGTTTTTCCCCGGCGGTCTCATTGTAAATGAAATGCCATTCCTTTCGAAAGCATCCATTCTTGTTTCAGCCACCTACGACGGAAAGAACTTCCAACACAATCAAAGCAAGTTTCTTGGTAGCCTCTGTAATGTGACAACTTTAGAGCTGTCAGGTTTTCAGACAATGATTATACCTGAGGAACCGGTTGAGTTACCAGAATTCAAGAACCTCAAGATCTTATCCCTTGACAAGTGTGATCTTAGTGACAACTTCCAGTTATTGAAGCACTTTCTGCAGAACTCGCCTAATTTGGAGAAGCTCACGTTGCGGCTTTGCGAGCTGCCAAAGGATTCTAAGAAAAGGAAAGGGAAGGCCAAGGCGAAGAAAACACGTTTGGTGGATATCCGGTGTGAGAACCTAAAGCTTACTGAAATCATCTACGATGCTGATGATGTCCTCCAACTGGTCGGGCTTTTGCTGAACGATTCAGCAAATCTTCCTAAGAACAACATAAAACTCAGCAAAGTTGATCGTTAGTATGGTTAGTTCAGGCCCTCTTTTGTGATGACCGATTCTTAGGCCTCTCCTGAATTCACATGTCTTGTCTGTCTTCCGATGCACTGTCAGTTGTGTAGTTGAAATGCACCTATCTTTTGACTTGTCTAATCGGTTTAAGACTGCTCTGTTCTGTTAGCTATTGCATGTGTTCTTGCGCGCTGTGATGCTAGGTTAATGGAGTGATAGCGATTGATACTTATGGCTATGAACAGACCAATTTCTTACTATA]
[-] EMBL CB632597 [ ATTTGCATTCAATGAGATCACGTCCCACTCACTGAAGAGC TGGTGATCGACAGCTGCGACAGCAAGCTTTGTCCTTCCAAACTGGTTGTCACGGCTCCTGCCATTGCCTCCCTGTGCCTTATTGTGAAATTGTGGTTTTTCCCCGGCGGTCTCATTGTAAATGAAATGCCATTCCTTTCGAAAGCATCCATTCTTGTTTCAGCCACCTACGACGGAAAGAACTTCCAACACAATCAAAGCAAGTTTCTTGGTAGCCTCTGTAATGTGACAACTTTAGAGCTGTCAGGTTTTCAGACAATGATTATACCTGAGGAACCGGTTGAGTTACCAGAATTCAAGAACCTCAAGATCTTATCCCTTGACAAGTGTGATCTTAGTGACAACTTCCAGTTATTGAAGCACTTTCTGCAGAACTCGCCTAATTTGGAGAAGCTCACGTTGCGGCTTTGCGAGCTGCCAAAGGATTCTAAGAAAAGGAAAGGGAAGGCCAAGGCGAAGAAAACACGTTTGGTGGATATCCGGTGTGAGAACCTAAAGCTTACTGAAATCATCTACGATGCTGATGATGTCCTCCAACTGGTCGGGCTTTTGCTGAACGATTCAGCAAATCTTCCTAAGAACAACATAAAACTCAGCAAAGTTGATCGTTAGTATGGTTAGTTCAGGCCCTCTTTTGTGATGACCGATTCTTAGGCCTCTCCTGAATTCACATGTCTTGTCTGTCTTCCGATGCACTGTCAGTTGTGTAGTTGAAATGCACCTATCTTTTGACTTGTCTAATCGGTTTAAGACTGCTCTGTTCTGTTAGCTATTGCATGTGTTCTTGCGCGCTGTGATGCTAGGTTAATGAAGTGATAGCGATTGATACTT ]
consensusID : consensus_7389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 846 fasta sequence
[TCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACGTTAGTCCCCGGCGATCCCATCTCTCCGACGGTTTATTTTTTTTCCTGCATCTCTTCAAACCTCTCTAATGTTTATTTATGTTCGGTCGAGTCCAATGTACTGGAGTAATGCTTTGAGTTTGGTTGGAAAATTCTTGATTCAGTTACTGATGTAGCAAAGGATCTCCCGTTTTTAAGTTTGGTGATTGTGTGGGTTCAGGTAAGAAATGGAAGTGGAGAATTTATAGGGCTTTTGTTCGTCTAATCCCTTATATATCCCGTGGAGATTGGAGGGGATTGGGGATAATAAGCCGTTACCAAGAAAAAAAAAGAGGGTTTTTTATAATTGAAATCCTGCATCAGCCACTATGATCTGCTAGTTGCATCTCCTTTTCAAGCTTAAGCTGATTTTGTGAATTCGCTATATATATGGAAATGGGGATTACTGTGGTTGATGCAATATTTTTGGCACTCTTGTAGACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGA]
[+] EMBL CB632596 [TCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACGTTAGTCCCCGGCGATCCCATCTCTCCGACGGTTTATTTTTTTTCCTGCATCTCTTCAAACCTCTCTAATGTTTATTTATGTTCGGTCGAGTCCAATGTACTGGAGTAATGCTTTGAGTTTGGTTGGAAAATTCTTGATTCAGTTACTGATGTAGCAAAGGATCTCCCGTTTTTAAGTTTGGTGATTGTGTGGGTTCAGGTAAGAAATGGAAGTGGAGAATTTATAGGGCTTTTGTTCGTCTAATCCCTTATATATCCCGTGGAGATTGGAGGGGATTGGGGATAATAAGCCGTTACCAAGAAAAAAAAAGAGGGTTTTTTATAATTGAAATCCTGCATCAGCCACTATGATCTGCTAGTTGCATCTCCTTTTCAAGCTTAAGCTGATTTTGTGAATTCGCTATATATATGGAAATGGGGATTACTGTGGTTGATGCAATATTTTTGGCACTCTTGTAGACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7389#0 CTGTCCGTGGGTCTCGACTCCATCGGTCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCG 60
consensus_7389#1 --------------------------TCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCG 34
**********************************
consensus_7389#0 GCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACACTGCAGTGGAATTGCTCCGAGAG 120
consensus_7389#1 GCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACGTT--------AGTCCCCGGCGAT 86
************************************ * * * * * * **
consensus_7389#0 CAGAGCTCTCCA--GGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGT 178
consensus_7389#1 CCCATCTCTCCGACGGTTTATTTTTTTTCCTGCATCTCTTCAAA----CCTCTCTAATGT 142
* * ****** *** * * * ** * * *** ** * ** **
consensus_7389#0 GGCGTCGCCGTCGATCG-GCTCAGCGCGTTGCCGGACTGCCTCCTCCATG-TCATCATGT 236
consensus_7389#1 TTATTTATGTTCGGTCGAGTCCAATGTACTGGAGTAATGCTTTGAGTTTGGTTGGAAAAT 202
* *** *** * ** * ** * * *** * ** * * *
consensus_7389#0 CCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACC 296
consensus_7389#1 TCTTGATTCAGTT---ACTGATGTAGCAAAGGATC-TCCCGTTTTTAAGTTTGGTG--AT 256
*** ** ** * * ** *** * * * * * ** ** * ** *
consensus_7389#0 TCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAG 356
consensus_7389#1 TGTGTGGGTTCAGGTAAGAAATGGAAGTGGAGAATTTATAGGGCTTTTGTTCGTCTAATC 316
* ** * * * * ** ** ** ** ** * * * * *
consensus_7389#0 CTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGATGC 416
consensus_7389#1 CCTTATATATC------------CCGTGGAGATTGGAGGGGATTGGGGATAA--TAAGCC 362
* * * * * ** ** **** *** *** ** * * *
consensus_7389#0 TTCATCACCAGATTGCACACCTGGATACGTTCCAGCTGCATGTTAATAATGTGTATCGTT 476
consensus_7389#1 GTTACCA--AGAAAAAAAAAGAGGGTTTTTTATAATTGAA-------ATCCTGCATCA-- 411
* * ** *** * * ** * ** * ** * * ** ***
consensus_7389#0 GGGGTCAACATGCATCTAGGTGGATTCGTCGCAGCATCAAGTATAACACCAAGGTTCCTG 536
consensus_7389#1 ---GCCACTATG-ATCT-GCTAGTTGCATCTCCTTTTCAAGCTTAAGCT---GATTTTGT 463
* ** *** **** * * * * * ** * ***** *** * **
consensus_7389#0 GCATTCCTCGCCCGGGATTGAGCTGCAGTTCTTGGAGCCTCAAAAGACTACATCTTTCTA 596
consensus_7389#1 GAATTCGCTATATATATGGAAATGGGGATTACTGTGGTT----GATGCAATATTTTTGGC 519
* **** * * ** ** * * * * ** ***
consensus_7389#0 ACATTTGT-----GTGGATGATCTGTTCGCAAAGCACATTAGCTCAATGTGCTGCTCTCT 651
consensus_7389#1 ACTCTTGTAGACTGCAGTGGAATTGCTCCGAGAGCAG---AGCTC----TCCAGGTCTCC 572
** **** * * ** ** ** * **** ***** * * * ****
consensus_7389#0 GGAGGATTTGAATCTCAAA-GGATGCAGATTTGCATTCAATGAGATCACGTCCCACTCAC 710
consensus_7389#1 AT-GGATCTGGACACCACACGAAAGCGGCCCCGTGAA-AGTGGCGTCGCCGTCGATCGGC 630
**** ** * ** * * * ** * * * ** ** * * * *
consensus_7389#0 TGAAGAGCTTGGTGATCGACAGCTGCGACAGCAAGCTTTGTCCTTCCAAACTGGTTGTCA 770
consensus_7389#1 TCAGCGCGTTGCCGGACTGCCTCCTCCATGTCA--TCATGTCCTTCATGAAGGCCAGGCA 688
* * *** * * * * * * ** ******** * * * **
consensus_7389#0 CG-GCTCCTGCCATTGCCTCCCTGTGCCTTATTGTGAAATTGTGGTTTTTCCCCGGCG-G 828
consensus_7389#1 GGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTG 748
* * * * * * * * * * * * * ** * ** *
consensus_7389#0 TCTCATTGTAAATGAAATGCCATTCCTTTCGAAAGCATCCATTCTTGTTTCAGCCACCTA 888
consensus_7389#1 CCTCGATGTAGATCATCGGGAGTTCC-----AAAGCACA-------GGTGAAGCTGCACA 796
*** **** ** * * **** ****** * * *** * *
consensus_7389#0 CGACGGAAAGAACTTCCAACACAATCAAAGCAAGTTTCTTGGTAGCCTCTGTAATGTGAC 948
consensus_7389#1 GGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGA---------- 846
* ** ** * * ** *** * *** * * ***
consensus_7389#0 AACTTTAGAGCTGTCAGGTTTTCAGACAATGATTATACCTGAGGAACCGGTTGAGTTACC 1008
consensus_7389#1 ------------------------------------------------------------
consensus_7389#0 AGAATTCAAGAACCTCAAGATCTTATCCCTTGACAAGTGTGATCTTAGTGACAACTTCCA 1068
consensus_7389#1 ------------------------------------------------------------
consensus_7389#0 GTTATTGAAGCACTTTCTGCAGAACTCGCCTAATTTGGAGAAGCTCACGTTGCGGCTTTG 1128
consensus_7389#1 ------------------------------------------------------------
consensus_7389#0 CGAGCTGCCAAAGGATTCTAAGAAAAGGAAAGGGAAGGCCAAGGCGAAGAAAACACGTTT 1188
consensus_7389#1 ------------------------------------------------------------
consensus_7389#0 GGTGGATATCCGGTGTGAGAACCTAAAGCTTACTGAAATCATCTACGATGCTGATGATGT 1248
consensus_7389#1 ------------------------------------------------------------
consensus_7389#0 CCTCCAACTGGTCGGGCTTTTGCTGAACGATTCAGCAAATCTTCCTAAGAACAACATAAA 1308
consensus_7389#1 ------------------------------------------------------------
consensus_7389#0 ACTCAGCAAAGTTGATCGTTAGTATGGTTAGTTCAGGCCCTCTTTTGTGATGACCGATTC 1368
consensus_7389#1 ------------------------------------------------------------
consensus_7389#0 TTAGGCCTCTCCTGAATTCACATGTCTTGTCTGTCTTCCGATGCACTGTCAGTTGTGTAG 1428
consensus_7389#1 ------------------------------------------------------------
consensus_7389#0 TTGAAATGCACCTATCTTTTGACTTGTCTAATCGGTTTAAGACTGCTCTGTTCTGTTAGC 1488
consensus_7389#1 ------------------------------------------------------------
consensus_7389#0 TATTGCATGTGTTCTTGCGCGCTGTGATGCTAGGTTAATGGAGTGATAGCGATTGATACT 1548
consensus_7389#1 ------------------------------------------------------------
consensus_7389#0 TATGGCTATGAACAGACCAATTTCTTACTATA 1580
consensus_7389#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||