These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 443 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAACTCCTCCCGGGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTTTTGCAACAAAAGTTTTTGATCCCCGAAAAATTGGACCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTTGCTTACGGGGGATGTCCAATCGGATTTTCACCCCCCCCCAAAAGCAAATCAGTTCTTGTAGCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTTGCCGAACACAAAATCCCCCTGGTTTGTCCCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGG-ATAGAAGGCCTTTTGCCCCTTCACCACGTTTTCCGTTTTGCCCCCCCAGGCCTTGAACGTGCTTTGTTGGAAAACCCGGCCAAAGGAAAAGGACAAAACCCACGGT] [+] EMBL CF317064 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAACTCCTCCCGGGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTTTTGCAACAAAAGTTTTTGATCCCCGAAAAATTGGACCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTTGCTTACGGGGGATGTCCAATCGGATTTTCACCCCCCCCCAAAAGCAAATCAGTCCTTGTAGCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTTGCCAAACACAAAATCCCCCTGGTTTGTACCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGG ATAGAAGGCCTTTTGCCCCTTAACCACGTTTTCCGTTTTGCCCCCCCAGGCCTTGAACGTGCTTTGTTGGAAAACCCGGCCAAAGGAAAAGGACAAAACCCACGGT] [+] EMBL CF337068 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAACTACTCCCGGTGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTTTTGCAACAAAAGTTTTTGATCCCCGTAAAATTGGACCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTTGCTTACGGGGGATGTCCAATCGGATTTTCACCCCCCCCCAAAACCAAATCAGTTCTTGTAGCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTCGCCGAACACAAAATCACCCTGGTTTGTCCCAAGGGTACCCTCAAAGTTGGCCTT CCCCTGGGGAATA AAGGCCTTTTGCCCCTTCACCACTTTTTCCGTTTTGCC ] [+] EMBL CF313363 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAACTCCTCCCGGGGACGGGGTTTAATTTTTAAAAAGCCCGGGTTCAAATTTTTGGGACAAAAGTTTTTGATCCCCGAAAAATGGGCCCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTTGCCTCCGGGGGGTGTCCAATGGGTTTTTCCCCCCCCCCCAAAAACAAATCAGTTCTTGGAGCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTTGCCGAACACAAAATCCCCCTGGTTTGTCCCAAGGGGACCCCCAAAGTTGGCCTTGCCCCTGGGG AATGAAGGCCTTTTGCCCCTTCACCACGTTTTCCGTTTTGCCCCCCCAGGCCTTGAGCGTGCTTTGTTGG ] consensusID : consensus_7398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTCCCGAGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTATTGGGAAAAAAGTTTTTGATCCCCGTAAAATTGGACCCTTGATACCCAAACCACCCTCAAAACCCTAAATTTGCTTACGGGGGATGTCCAATGGGATTTTCACCCCCCCCCAAAAGCAAATCAGTCCTTGTAGCCCTTGACGGGAAGGCTTTAAAAGGCCCCCTTGCCGAACACAAAATCACCCTGGTTTGTACCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGGATAAAGGCCTTTTGGGCCTTAACCACGTTTTCCGTTTTGCCGCCCCAGGCCTT] [+] EMBL CF317197 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTCCCGAGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTATTGGGAAAAAAGTTTTTGATCCCCGTAAAATTGGACCCTTGATACCCAAACCACCCTCAAAACCCTAAATTTGCTTACGGGGGATGTCCAATGGGATTTTCACCCCCCCCCAAAAGCAAATCAGTCCTTGTAGCCCTTGACGGGAAGGCTTTAAAAGGCCCCCTTGCCGAACACAAAATCACCCTGGTTTGTACCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGGATAAAGGCCTTTTGGGCCTTAACCACGTTTTCCGTTTTGCCGCCCCAGGCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7398#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAAAAAAC 60 consensus_7398#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC-------- 52 **************************************************** consensus_7398#0 TCCTCCCGGGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTTTTGCAACAAAAG 120 consensus_7398#1 ---TCCCGAGGACGGGTTTTAATTTTTAAAAAGCCCAGGTTCAAATTATTGGGAAAAAAG 109 ***** ************************************** *** * ***** consensus_7398#0 TTTTTGATCCCCGAAAAATTGGACCCTTGATACCCAAACCCCCCTCAAAACCCTAAATTT 180 consensus_7398#1 TTTTTGATCCCCGTAAAATTGGACCCTTGATACCCAAACCACCCTCAAAACCCTAAATTT 169 ************* ************************** ******************* consensus_7398#0 GCTTACGGGGGATGTCCAATCGGATTTTCACCCCCCCCCAAAAGCAAATCAGTTCTTGTA 240 consensus_7398#1 GCTTACGGGGGATGTCCAATGGGATTTTCACCCCCCCCCAAAAGCAAATCAGTCCTTGTA 229 ******************** ******************************** ****** consensus_7398#0 GCCCTTGACGGGAAGGGTTTAAAAGGCCCCCTTGCCGAACACAAAATCCCCCTGGTTTGT 300 consensus_7398#1 GCCCTTGACGGGAAGGCTTTAAAAGGCCCCCTTGCCGAACACAAAATCACCCTGGTTTGT 289 **************** ******************************* *********** consensus_7398#0 CCCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGGATAGAAGGCCTTTTGCCCCTTCA 360 consensus_7398#1 ACCAAGGGTACCCTCAAAGTTGGCCTTGCCCCTGGGGATA-AAGGCCTTTTGGGCCTTAA 348 *************************************** *********** **** * consensus_7398#0 CCACGTTTTCCGTTTTGCCCCCCCAGGCCTTGAACGTGCTTTGTTGGAAAACCCGGCCAA 420 consensus_7398#1 CCACGTTTTCCGTTTTGCCGCCCCAGGCCTT----------------------------- 379 ******************* *********** consensus_7398#0 AGGAAAAGGACAAAACCCACGGT 443 consensus_7398#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||