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Oryza sativa
cluster # 7399 cluster # 7399       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7399#0 length = 1581 sequences # 3  
consensus_7399#1 length = 481 sequences # 1  

consensusID : consensus_7399#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1581
fasta sequence
                              [ACTGCAGATCATTCTGTTCCTATAGGAGTGAGATTGCTCAAATTGCAGTTATCAACCATTGAGGCTTCTATTCCACCAGAAGCAATTCAACCATTTTGGACTGATGGTTATCGAAAATCTTGGGGTGTGAAGTTGCACTCTACAACTTCGTTGGAGGAAATATTTCAGATGTTGACACTGCTGGAAGCCGCAATAAAACGGGACCACCTATCTTCAGAATTTGAAACAACATCTGAGTTGCTTAACTTGAACACACAAGATAATCCATCCCAGAATCATGTTGGATTGTCTGGATCTGCTGCTGTACTTCCATGGGTTCCTGACACTACTGCTGCGATTGCACTACGAATGTTAGACCTAGACTCAGCAGTATCATACATGCAAAATCAAAAGATGGAGAGAAATGGTGGAGATTTCATGAAGCCTCCATCAAGGTTTGTGGCTGTTAAGAATGCACAAGAATTAGATCCACTGGAAACAACCGGTTTAGACCTTTTTGATGGAAGGTGGGCTACTGGTAGTGGCCGTAGGGGTCGTGGACGAGGAAGTAGAGGGGGTAGCAGGGGAGGCAGAGGCCGAAGTCGAGGTGGAAGGGTCCCAAGAGGTATTAGCATCTCATCTAGGATTGGATTTAAGGATGAAAATGAAGCCTCAAGGAAGAACACTCGTCGAGGGCGTACTCGTGGCCGTGGTCGTGGGCGAGGACGTCGAACTGTTAGGTCACGGCAACCATCTGAGGGCAAAGGCAGATCAATTCCCAAGGAAAATTTGTTGGGGAGCTTTAGCATGCTTAGCAATGCAAAGGCTGCCACTGTTGAGGAGTCTCCAAGGAGCTCAGGTGCTGATGAATGGGGCTTGGAGAACAGAAGGCCATATATTGATGGTGATGAGAACAGTTCTGGATCTCAGTTAGATCAATCAGAAGATAATGAGGAAAATGGCCAACCCATGGATGAGGAATATGATGAGCAGGTTCCAGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGCATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAGATGTGGAGGGCGATGATGATGGGGAGGAAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGATGATATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGACTAAGATTGGCCAGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTACTGTTAGTGGGCATTACTT-ACCCTTGTGGTTAAA-ATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTT-TT-GATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTT-TGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCA-AAGTACCAAGTTTACCAGCGGGGTTGCCTTTACATATTGTTACAAAAAAAAAA]

[+] EMBL AK107129             [ACTGCAGATCATTCTGTTCCTATAGGAGTGAGATTGCTCAAATTGCAGTTATCAACCATTGAGGCTTCTATTCCACCAGAAGCAATTCAACCATTTTGGACTGATGGTTATCGAAAATCTTGGGGTGTGAAGTTGCACTCTACAACTTCGTTGGAGGAAATATTTCAGATGTTGACACTGCTGGAAGCCGCAATAAAACGGGACCACCTATCTTCAGAATTTGAAACAACATCTGAGTTGCTTAACTTGAACACACAAGATAATCCATCCCAGAATCATGTTGGATTGTCTGGATCTGCTGCTGTACTTCCATGGGTTCCTGACACTACTGCTGCGATTGCACTACGAATGTTAGACCTAGACTCAGCAGTATCATACATGCAAAATCAAAAGATGGAGAGAAATGGTGGAGATTTCATGAAGCCTCCATCAAGGTTTGTGGCTGTTAAGAATGCACAAGAATTAGATCCACTGGAAACAACCGGTTTAGACCTTTTTGATGGAAGGTGGGCTACTGGTAGTGGCCGTAGGGGTCGTGGACGAGGAAGTAGAGGGGGTAGCAGGGGAGGCAGAGGCCGAAGTCGAGGTGGAAGGGTCCCAAGAGGTATTAGCATCTCATCTAGGATTGGATTTAAGGATGAAAATGAAGCCTCAAGGAAGAACACTCGTCGAGGGCGTACTCGTGGCCGTGGTCGTGGGCGAGGACGTCGAACTGTTAGGTCACGGCAACCATCTGAGGGCAAAGGCAGATCAATTCCCAAGGAAAATTTGTTGGGGAGCTTTAGCATGCTTAGCAATGCAAAGGCTGCCACTGTTGAGGAGTCTCCAAGGAGCTCAGGTGCTGATGAATGGGGCTTGGAGAACAGAAGGCCATATATTGATGGTGATGAGAACAGTTCTGGATCTCAGTTAGATCAATCAGAAGATAATGAGGAAAATGGCCAACCCATGGATGAGGAATATGATGAGCAGGTTCCAGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGCATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAGATGTGGAGGGCGATGATGATGGGGAGGAAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGATGATATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGACTAAGATTGGCCAGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTACTGTTAGTGGGCATTACTT ACCCTTGTGGTTAAA ATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTT TT GATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTT TGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCA AAGTACCA                                             ]
[+] EMBL AU225531             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gccgctGCGTCCTATGCCGTAATCCCTAAATTTCCAATAGATGTCTGAATCAAGTACTGTTAGTGGGCATTACTTGACCCTCGTGGTTAAAGATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTTATTCGATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTTGAGCTGGTCTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCAGAAGTACCAAGTTTACCAGCGG                                ]
[+] EMBL BI800572             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gGTCTGAATCAAGTACTGTTAGTGGGCATTACTT GCCCTTGTGGTTAAA ATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTT TT GATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTT TGCTGGTTTAAGGTGTTGGGATTGATGCGTAC ATGTGCCAAGGCA AAGTACCAAGTTTACCTGAATGGTTGCCTTTACATATTGTTACAAAAAAAAAA]


>consensus_7399#0 ACTGCAGATCATTCTGTTCCTATAGGAGTGAGATTGCTCAAATTGCAGTTATCAACCATT GAGGCTTCTATTCCACCAGAAGCAATTCAACCATTTTGGACTGATGGTTATCGAAAATCT TGGGGTGTGAAGTTGCACTCTACAACTTCGTTGGAGGAAATATTTCAGATGTTGACACTG CTGGAAGCCGCAATAAAACGGGACCACCTATCTTCAGAATTTGAAACAACATCTGAGTTG CTTAACTTGAACACACAAGATAATCCATCCCAGAATCATGTTGGATTGTCTGGATCTGCT GCTGTACTTCCATGGGTTCCTGACACTACTGCTGCGATTGCACTACGAATGTTAGACCTA GACTCAGCAGTATCATACATGCAAAATCAAAAGATGGAGAGAAATGGTGGAGATTTCATG AAGCCTCCATCAAGGTTTGTGGCTGTTAAGAATGCACAAGAATTAGATCCACTGGAAACA ACCGGTTTAGACCTTTTTGATGGAAGGTGGGCTACTGGTAGTGGCCGTAGGGGTCGTGGA CGAGGAAGTAGAGGGGGTAGCAGGGGAGGCAGAGGCCGAAGTCGAGGTGGAAGGGTCCCA AGAGGTATTAGCATCTCATCTAGGATTGGATTTAAGGATGAAAATGAAGCCTCAAGGAAG AACACTCGTCGAGGGCGTACTCGTGGCCGTGGTCGTGGGCGAGGACGTCGAACTGTTAGG TCACGGCAACCATCTGAGGGCAAAGGCAGATCAATTCCCAAGGAAAATTTGTTGGGGAGC TTTAGCATGCTTAGCAATGCAAAGGCTGCCACTGTTGAGGAGTCTCCAAGGAGCTCAGGT GCTGATGAATGGGGCTTGGAGAACAGAAGGCCATATATTGATGGTGATGAGAACAGTTCT GGATCTCAGTTAGATCAATCAGAAGATAATGAGGAAAATGGCCAACCCATGGATGAGGAA TATGATGAGCAGGTTCCAGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGC ATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAGATGTGGAGGGCGATGATGATGGG GAGGAAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGAT GATATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCT GATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGACTAAGATTGGCCAGTA GAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTAC TGTTAGTGGGCATTACTTACCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTCTGTG TGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTTTTGATTTTCGGCGT AGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTTTGCTGGTTTAAGGTGTTG GGATTGATGCGTACAATGTGCCAAGGCAAAGTACCAAGTTTACCAGCGGGGTTGCCTTTA CATATTGTTACAAAAAAAAAA



consensusID : consensus_7399#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence
                              [AGAGGACGAGACAAGGGGAGGAAGATGATGCGGACGCTGAGATGGACGAGGATGATGAAATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTTGTATTTATTGGAGTTCAGCGACTAAGATTGGCCCGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCCATAGATGTTTGAATCAAGTACTGTTAGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTTTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTTCTGCATGCTTTTTTTGATTTTTGGGGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAACTGTACTTTGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCAAAGTTCCCAGTTTTCCTGAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760518             [AGAGGACGAGACAAGGGGAGGAAGATGATGCGGACGCTGAGATGGACGAGGATGATGAAATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTTGTATTTATTGGAGTTCAGCGACTAAGATTGGCCCGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCCATAGATGTTTGAATCAAGTACTGTTAGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTTTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTTCTGCATGCTTTTTTTGATTTTTGGGGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAACTGTACTTTGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCAAAGTTCCCAGTTTTCCTGAAAAAAAAAAAAAAAAAAA]


>consensus_7399#1 AGAGGACGAGACAAGGGGAGGAAGATGATGCGGACGCTGAGATGGACGAGGATGATGAAA TAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATG AAGATGAAGGCGGTTCCTTGTATTTATTGGAGTTCAGCGACTAAGATTGGCCCGTAGAGG CCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCCATAGATGTTTGAATCAAGTACTGTT AGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTTTGTGTGAT AGATAGGCATGTAGTACTGATGTTCAGTTCTGCATGCTTTTTTTGATTTTTGGGGTAGCC GAGCTGCCCAAACAACCGGGTAGTGTGAAACTGTACTTTGCTGGTTTAAGGTGTTGGGAT TGATGCGTACAATGTGCCAAGGCAAAGTTCCCAGTTTTCCTGAAAAAAAAAAAAAAAAAA A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7399#0      ACTGCAGATCATTCTGTTCCTATAGGAGTGAGATTGCTCAAATTGCAGTTATCAACCATT 60
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      GAGGCTTCTATTCCACCAGAAGCAATTCAACCATTTTGGACTGATGGTTATCGAAAATCT 120
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      TGGGGTGTGAAGTTGCACTCTACAACTTCGTTGGAGGAAATATTTCAGATGTTGACACTG 180
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      CTGGAAGCCGCAATAAAACGGGACCACCTATCTTCAGAATTTGAAACAACATCTGAGTTG 240
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      CTTAACTTGAACACACAAGATAATCCATCCCAGAATCATGTTGGATTGTCTGGATCTGCT 300
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      GCTGTACTTCCATGGGTTCCTGACACTACTGCTGCGATTGCACTACGAATGTTAGACCTA 360
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      GACTCAGCAGTATCATACATGCAAAATCAAAAGATGGAGAGAAATGGTGGAGATTTCATG 420
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      AAGCCTCCATCAAGGTTTGTGGCTGTTAAGAATGCACAAGAATTAGATCCACTGGAAACA 480
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      ACCGGTTTAGACCTTTTTGATGGAAGGTGGGCTACTGGTAGTGGCCGTAGGGGTCGTGGA 540
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      CGAGGAAGTAGAGGGGGTAGCAGGGGAGGCAGAGGCCGAAGTCGAGGTGGAAGGGTCCCA 600
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      AGAGGTATTAGCATCTCATCTAGGATTGGATTTAAGGATGAAAATGAAGCCTCAAGGAAG 660
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      AACACTCGTCGAGGGCGTACTCGTGGCCGTGGTCGTGGGCGAGGACGTCGAACTGTTAGG 720
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      TCACGGCAACCATCTGAGGGCAAAGGCAGATCAATTCCCAAGGAAAATTTGTTGGGGAGC 780
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      TTTAGCATGCTTAGCAATGCAAAGGCTGCCACTGTTGAGGAGTCTCCAAGGAGCTCAGGT 840
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      GCTGATGAATGGGGCTTGGAGAACAGAAGGCCATATATTGATGGTGATGAGAACAGTTCT 900
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      GGATCTCAGTTAGATCAATCAGAAGATAATGAGGAAAATGGCCAACCCATGGATGAGGAA 960
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      TATGATGAGCAGGTTCCAGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGC 1020
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      ATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAGATGTGGAGGGCGATGATGATGGG 1080
consensus_7399#1      ------------------------------------------------------------
                                                                                  

consensus_7399#0      GAGGAAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGAT 1140
consensus_7399#1      --AGAGGACGAGACAAGGGGAGGAA--GATGATGCGGACGCTGAGATGGACGAGGATGAT 56
                         ** ** **  *     * * *   *******  ** *********************

consensus_7399#0      GATATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCT 1200
consensus_7399#1      GAAATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCT 116
                      ** *********************************************************

consensus_7399#0      GATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGACTAAGATTGGCCAGTA 1260
consensus_7399#1      GATGAAGATGAAGGCGGTTCCTTGTATTTATTGGAGTTCAGCGACTAAGATTGGCCCGTA 176
                      ********************** ***** ** ***** ****************** ***

consensus_7399#0      GAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTAC 1320
consensus_7399#1      GAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCCATAGATGTTTGAATCAAGTAC 236
                      ************************************** ******** ************

consensus_7399#0      TGTTAGTGGGCATTACTTACCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTCTGTG 1380
consensus_7399#1      TGTTAGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTTTGTG 296
                      ****************** ************************************ ****

consensus_7399#0      TGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTTTTGATTTTCGGCGT 1440
consensus_7399#1      TGATAGATAGGCATGTAGTACTGATGTTCAGTTCTGCATGCTTTTTTTGATTTTTGGGGT 356
                      ******************************** ********** ********** ** **

consensus_7399#0      AGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTTTGCTGGTTTAAGGTGTTG 1500
consensus_7399#1      AGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAACTGTACTTTGCTGGTTTAAGGTGTTG 416
                      ********************************* **************************

consensus_7399#0      GGATTGATGCGTACAATGTGCCAAGGCAAAGTACCAAGTTTACCAGCGGGGTTGCCTTTA 1560
consensus_7399#1      GGATTGATGCGTACAATGTGCCAAGGCAAAGTTCCCAGTTTTCCTGAAAAAAA------- 469
                      ******************************** ** ***** ** *              

consensus_7399#0      CATATTGTTACAAAAAAAAAA 1581
consensus_7399#1      ---------AAAAAAAAAAAA 481
                               * **********




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)