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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1581 fasta sequence
[ACTGCAGATCATTCTGTTCCTATAGGAGTGAGATTGCTCAAATTGCAGTTATCAACCATTGAGGCTTCTATTCCACCAGAAGCAATTCAACCATTTTGGACTGATGGTTATCGAAAATCTTGGGGTGTGAAGTTGCACTCTACAACTTCGTTGGAGGAAATATTTCAGATGTTGACACTGCTGGAAGCCGCAATAAAACGGGACCACCTATCTTCAGAATTTGAAACAACATCTGAGTTGCTTAACTTGAACACACAAGATAATCCATCCCAGAATCATGTTGGATTGTCTGGATCTGCTGCTGTACTTCCATGGGTTCCTGACACTACTGCTGCGATTGCACTACGAATGTTAGACCTAGACTCAGCAGTATCATACATGCAAAATCAAAAGATGGAGAGAAATGGTGGAGATTTCATGAAGCCTCCATCAAGGTTTGTGGCTGTTAAGAATGCACAAGAATTAGATCCACTGGAAACAACCGGTTTAGACCTTTTTGATGGAAGGTGGGCTACTGGTAGTGGCCGTAGGGGTCGTGGACGAGGAAGTAGAGGGGGTAGCAGGGGAGGCAGAGGCCGAAGTCGAGGTGGAAGGGTCCCAAGAGGTATTAGCATCTCATCTAGGATTGGATTTAAGGATGAAAATGAAGCCTCAAGGAAGAACACTCGTCGAGGGCGTACTCGTGGCCGTGGTCGTGGGCGAGGACGTCGAACTGTTAGGTCACGGCAACCATCTGAGGGCAAAGGCAGATCAATTCCCAAGGAAAATTTGTTGGGGAGCTTTAGCATGCTTAGCAATGCAAAGGCTGCCACTGTTGAGGAGTCTCCAAGGAGCTCAGGTGCTGATGAATGGGGCTTGGAGAACAGAAGGCCATATATTGATGGTGATGAGAACAGTTCTGGATCTCAGTTAGATCAATCAGAAGATAATGAGGAAAATGGCCAACCCATGGATGAGGAATATGATGAGCAGGTTCCAGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGCATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAGATGTGGAGGGCGATGATGATGGGGAGGAAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGATGATATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGACTAAGATTGGCCAGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTACTGTTAGTGGGCATTACTT-ACCCTTGTGGTTAAA-ATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTT-TT-GATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTT-TGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCA-AAGTACCAAGTTTACCAGCGGGGTTGCCTTTACATATTGTTACAAAAAAAAAA]
[+] EMBL AK107129 [ACTGCAGATCATTCTGTTCCTATAGGAGTGAGATTGCTCAAATTGCAGTTATCAACCATTGAGGCTTCTATTCCACCAGAAGCAATTCAACCATTTTGGACTGATGGTTATCGAAAATCTTGGGGTGTGAAGTTGCACTCTACAACTTCGTTGGAGGAAATATTTCAGATGTTGACACTGCTGGAAGCCGCAATAAAACGGGACCACCTATCTTCAGAATTTGAAACAACATCTGAGTTGCTTAACTTGAACACACAAGATAATCCATCCCAGAATCATGTTGGATTGTCTGGATCTGCTGCTGTACTTCCATGGGTTCCTGACACTACTGCTGCGATTGCACTACGAATGTTAGACCTAGACTCAGCAGTATCATACATGCAAAATCAAAAGATGGAGAGAAATGGTGGAGATTTCATGAAGCCTCCATCAAGGTTTGTGGCTGTTAAGAATGCACAAGAATTAGATCCACTGGAAACAACCGGTTTAGACCTTTTTGATGGAAGGTGGGCTACTGGTAGTGGCCGTAGGGGTCGTGGACGAGGAAGTAGAGGGGGTAGCAGGGGAGGCAGAGGCCGAAGTCGAGGTGGAAGGGTCCCAAGAGGTATTAGCATCTCATCTAGGATTGGATTTAAGGATGAAAATGAAGCCTCAAGGAAGAACACTCGTCGAGGGCGTACTCGTGGCCGTGGTCGTGGGCGAGGACGTCGAACTGTTAGGTCACGGCAACCATCTGAGGGCAAAGGCAGATCAATTCCCAAGGAAAATTTGTTGGGGAGCTTTAGCATGCTTAGCAATGCAAAGGCTGCCACTGTTGAGGAGTCTCCAAGGAGCTCAGGTGCTGATGAATGGGGCTTGGAGAACAGAAGGCCATATATTGATGGTGATGAGAACAGTTCTGGATCTCAGTTAGATCAATCAGAAGATAATGAGGAAAATGGCCAACCCATGGATGAGGAATATGATGAGCAGGTTCCAGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGCATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAGATGTGGAGGGCGATGATGATGGGGAGGAAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGATGATATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGACTAAGATTGGCCAGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTACTGTTAGTGGGCATTACTT ACCCTTGTGGTTAAA ATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTT TT GATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTT TGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCA AAGTACCA ]
[+] EMBL AU225531 [ gccgctGCGTCCTATGCCGTAATCCCTAAATTTCCAATAGATGTCTGAATCAAGTACTGTTAGTGGGCATTACTTGACCCTCGTGGTTAAAGATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTTATTCGATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTTGAGCTGGTCTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCAGAAGTACCAAGTTTACCAGCGG ]
[+] EMBL BI800572 [ gGTCTGAATCAAGTACTGTTAGTGGGCATTACTT GCCCTTGTGGTTAAA ATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTT TT GATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTT TGCTGGTTTAAGGTGTTGGGATTGATGCGTAC ATGTGCCAAGGCA AAGTACCAAGTTTACCTGAATGGTTGCCTTTACATATTGTTACAAAAAAAAAA]
consensusID : consensus_7399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[AGAGGACGAGACAAGGGGAGGAAGATGATGCGGACGCTGAGATGGACGAGGATGATGAAATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTTGTATTTATTGGAGTTCAGCGACTAAGATTGGCCCGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCCATAGATGTTTGAATCAAGTACTGTTAGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTTTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTTCTGCATGCTTTTTTTGATTTTTGGGGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAACTGTACTTTGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCAAAGTTCCCAGTTTTCCTGAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760518 [AGAGGACGAGACAAGGGGAGGAAGATGATGCGGACGCTGAGATGGACGAGGATGATGAAATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTTGTATTTATTGGAGTTCAGCGACTAAGATTGGCCCGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCCATAGATGTTTGAATCAAGTACTGTTAGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTTTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTTCTGCATGCTTTTTTTGATTTTTGGGGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAACTGTACTTTGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCAAAGTTCCCAGTTTTCCTGAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7399#0 ACTGCAGATCATTCTGTTCCTATAGGAGTGAGATTGCTCAAATTGCAGTTATCAACCATT 60
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 GAGGCTTCTATTCCACCAGAAGCAATTCAACCATTTTGGACTGATGGTTATCGAAAATCT 120
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 TGGGGTGTGAAGTTGCACTCTACAACTTCGTTGGAGGAAATATTTCAGATGTTGACACTG 180
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 CTGGAAGCCGCAATAAAACGGGACCACCTATCTTCAGAATTTGAAACAACATCTGAGTTG 240
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 CTTAACTTGAACACACAAGATAATCCATCCCAGAATCATGTTGGATTGTCTGGATCTGCT 300
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 GCTGTACTTCCATGGGTTCCTGACACTACTGCTGCGATTGCACTACGAATGTTAGACCTA 360
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 GACTCAGCAGTATCATACATGCAAAATCAAAAGATGGAGAGAAATGGTGGAGATTTCATG 420
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 AAGCCTCCATCAAGGTTTGTGGCTGTTAAGAATGCACAAGAATTAGATCCACTGGAAACA 480
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 ACCGGTTTAGACCTTTTTGATGGAAGGTGGGCTACTGGTAGTGGCCGTAGGGGTCGTGGA 540
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 CGAGGAAGTAGAGGGGGTAGCAGGGGAGGCAGAGGCCGAAGTCGAGGTGGAAGGGTCCCA 600
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 AGAGGTATTAGCATCTCATCTAGGATTGGATTTAAGGATGAAAATGAAGCCTCAAGGAAG 660
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 AACACTCGTCGAGGGCGTACTCGTGGCCGTGGTCGTGGGCGAGGACGTCGAACTGTTAGG 720
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 TCACGGCAACCATCTGAGGGCAAAGGCAGATCAATTCCCAAGGAAAATTTGTTGGGGAGC 780
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 TTTAGCATGCTTAGCAATGCAAAGGCTGCCACTGTTGAGGAGTCTCCAAGGAGCTCAGGT 840
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 GCTGATGAATGGGGCTTGGAGAACAGAAGGCCATATATTGATGGTGATGAGAACAGTTCT 900
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 GGATCTCAGTTAGATCAATCAGAAGATAATGAGGAAAATGGCCAACCCATGGATGAGGAA 960
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 TATGATGAGCAGGTTCCAGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGC 1020
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 ATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAGATGTGGAGGGCGATGATGATGGG 1080
consensus_7399#1 ------------------------------------------------------------
consensus_7399#0 GAGGAAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGAT 1140
consensus_7399#1 --AGAGGACGAGACAAGGGGAGGAA--GATGATGCGGACGCTGAGATGGACGAGGATGAT 56
** ** ** * * * * ******* ** *********************
consensus_7399#0 GATATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCT 1200
consensus_7399#1 GAAATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCT 116
** *********************************************************
consensus_7399#0 GATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGACTAAGATTGGCCAGTA 1260
consensus_7399#1 GATGAAGATGAAGGCGGTTCCTTGTATTTATTGGAGTTCAGCGACTAAGATTGGCCCGTA 176
********************** ***** ** ***** ****************** ***
consensus_7399#0 GAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTAC 1320
consensus_7399#1 GAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCCATAGATGTTTGAATCAAGTAC 236
************************************** ******** ************
consensus_7399#0 TGTTAGTGGGCATTACTTACCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTCTGTG 1380
consensus_7399#1 TGTTAGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTTTGTG 296
****************** ************************************ ****
consensus_7399#0 TGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTTTTGATTTTCGGCGT 1440
consensus_7399#1 TGATAGATAGGCATGTAGTACTGATGTTCAGTTCTGCATGCTTTTTTTGATTTTTGGGGT 356
******************************** ********** ********** ** **
consensus_7399#0 AGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTTTGCTGGTTTAAGGTGTTG 1500
consensus_7399#1 AGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAACTGTACTTTGCTGGTTTAAGGTGTTG 416
********************************* **************************
consensus_7399#0 GGATTGATGCGTACAATGTGCCAAGGCAAAGTACCAAGTTTACCAGCGGGGTTGCCTTTA 1560
consensus_7399#1 GGATTGATGCGTACAATGTGCCAAGGCAAAGTTCCCAGTTTTCCTGAAAAAAA------- 469
******************************** ** ***** ** *
consensus_7399#0 CATATTGTTACAAAAAAAAAA 1581
consensus_7399#1 ---------AAAAAAAAAAAA 481
* **********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||