These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1581 fasta sequence [ACTGCAGATCATTCTGTTCCTATAGGAGTGAGATTGCTCAAATTGCAGTTATCAACCATTGAGGCTTCTATTCCACCAGAAGCAATTCAACCATTTTGGACTGATGGTTATCGAAAATCTTGGGGTGTGAAGTTGCACTCTACAACTTCGTTGGAGGAAATATTTCAGATGTTGACACTGCTGGAAGCCGCAATAAAACGGGACCACCTATCTTCAGAATTTGAAACAACATCTGAGTTGCTTAACTTGAACACACAAGATAATCCATCCCAGAATCATGTTGGATTGTCTGGATCTGCTGCTGTACTTCCATGGGTTCCTGACACTACTGCTGCGATTGCACTACGAATGTTAGACCTAGACTCAGCAGTATCATACATGCAAAATCAAAAGATGGAGAGAAATGGTGGAGATTTCATGAAGCCTCCATCAAGGTTTGTGGCTGTTAAGAATGCACAAGAATTAGATCCACTGGAAACAACCGGTTTAGACCTTTTTGATGGAAGGTGGGCTACTGGTAGTGGCCGTAGGGGTCGTGGACGAGGAAGTAGAGGGGGTAGCAGGGGAGGCAGAGGCCGAAGTCGAGGTGGAAGGGTCCCAAGAGGTATTAGCATCTCATCTAGGATTGGATTTAAGGATGAAAATGAAGCCTCAAGGAAGAACACTCGTCGAGGGCGTACTCGTGGCCGTGGTCGTGGGCGAGGACGTCGAACTGTTAGGTCACGGCAACCATCTGAGGGCAAAGGCAGATCAATTCCCAAGGAAAATTTGTTGGGGAGCTTTAGCATGCTTAGCAATGCAAAGGCTGCCACTGTTGAGGAGTCTCCAAGGAGCTCAGGTGCTGATGAATGGGGCTTGGAGAACAGAAGGCCATATATTGATGGTGATGAGAACAGTTCTGGATCTCAGTTAGATCAATCAGAAGATAATGAGGAAAATGGCCAACCCATGGATGAGGAATATGATGAGCAGGTTCCAGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGCATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAGATGTGGAGGGCGATGATGATGGGGAGGAAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGATGATATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGACTAAGATTGGCCAGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTACTGTTAGTGGGCATTACTT-ACCCTTGTGGTTAAA-ATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTT-TT-GATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTT-TGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCA-AAGTACCAAGTTTACCAGCGGGGTTGCCTTTACATATTGTTACAAAAAAAAAA] [+] EMBL AK107129 [ACTGCAGATCATTCTGTTCCTATAGGAGTGAGATTGCTCAAATTGCAGTTATCAACCATTGAGGCTTCTATTCCACCAGAAGCAATTCAACCATTTTGGACTGATGGTTATCGAAAATCTTGGGGTGTGAAGTTGCACTCTACAACTTCGTTGGAGGAAATATTTCAGATGTTGACACTGCTGGAAGCCGCAATAAAACGGGACCACCTATCTTCAGAATTTGAAACAACATCTGAGTTGCTTAACTTGAACACACAAGATAATCCATCCCAGAATCATGTTGGATTGTCTGGATCTGCTGCTGTACTTCCATGGGTTCCTGACACTACTGCTGCGATTGCACTACGAATGTTAGACCTAGACTCAGCAGTATCATACATGCAAAATCAAAAGATGGAGAGAAATGGTGGAGATTTCATGAAGCCTCCATCAAGGTTTGTGGCTGTTAAGAATGCACAAGAATTAGATCCACTGGAAACAACCGGTTTAGACCTTTTTGATGGAAGGTGGGCTACTGGTAGTGGCCGTAGGGGTCGTGGACGAGGAAGTAGAGGGGGTAGCAGGGGAGGCAGAGGCCGAAGTCGAGGTGGAAGGGTCCCAAGAGGTATTAGCATCTCATCTAGGATTGGATTTAAGGATGAAAATGAAGCCTCAAGGAAGAACACTCGTCGAGGGCGTACTCGTGGCCGTGGTCGTGGGCGAGGACGTCGAACTGTTAGGTCACGGCAACCATCTGAGGGCAAAGGCAGATCAATTCCCAAGGAAAATTTGTTGGGGAGCTTTAGCATGCTTAGCAATGCAAAGGCTGCCACTGTTGAGGAGTCTCCAAGGAGCTCAGGTGCTGATGAATGGGGCTTGGAGAACAGAAGGCCATATATTGATGGTGATGAGAACAGTTCTGGATCTCAGTTAGATCAATCAGAAGATAATGAGGAAAATGGCCAACCCATGGATGAGGAATATGATGAGCAGGTTCCAGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGCATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAGATGTGGAGGGCGATGATGATGGGGAGGAAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGATGATATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGACTAAGATTGGCCAGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTACTGTTAGTGGGCATTACTT ACCCTTGTGGTTAAA ATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTT TT GATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTT TGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCA AAGTACCA ] [+] EMBL AU225531 [ gccgctGCGTCCTATGCCGTAATCCCTAAATTTCCAATAGATGTCTGAATCAAGTACTGTTAGTGGGCATTACTTGACCCTCGTGGTTAAAGATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTTATTCGATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTTGAGCTGGTCTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCAGAAGTACCAAGTTTACCAGCGG ] [+] EMBL BI800572 [ gGTCTGAATCAAGTACTGTTAGTGGGCATTACTT GCCCTTGTGGTTAAA ATGCTAGACGCGGACCAGAGGTCTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTT TT GATTTTCGGCGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTT TGCTGGTTTAAGGTGTTGGGATTGATGCGTAC ATGTGCCAAGGCA AAGTACCAAGTTTACCTGAATGGTTGCCTTTACATATTGTTACAAAAAAAAAA] consensusID : consensus_7399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [AGAGGACGAGACAAGGGGAGGAAGATGATGCGGACGCTGAGATGGACGAGGATGATGAAATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTTGTATTTATTGGAGTTCAGCGACTAAGATTGGCCCGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCCATAGATGTTTGAATCAAGTACTGTTAGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTTTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTTCTGCATGCTTTTTTTGATTTTTGGGGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAACTGTACTTTGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCAAAGTTCCCAGTTTTCCTGAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760518 [AGAGGACGAGACAAGGGGAGGAAGATGATGCGGACGCTGAGATGGACGAGGATGATGAAATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCTGATGAAGATGAAGGCGGTTCCTTGTATTTATTGGAGTTCAGCGACTAAGATTGGCCCGTAGAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCCATAGATGTTTGAATCAAGTACTGTTAGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTTTGTGTGATAGATAGGCATGTAGTACTGATGTTCAGTTCTGCATGCTTTTTTTGATTTTTGGGGTAGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAACTGTACTTTGCTGGTTTAAGGTGTTGGGATTGATGCGTACAATGTGCCAAGGCAAAGTTCCCAGTTTTCCTGAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7399#0 ACTGCAGATCATTCTGTTCCTATAGGAGTGAGATTGCTCAAATTGCAGTTATCAACCATT 60 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 GAGGCTTCTATTCCACCAGAAGCAATTCAACCATTTTGGACTGATGGTTATCGAAAATCT 120 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 TGGGGTGTGAAGTTGCACTCTACAACTTCGTTGGAGGAAATATTTCAGATGTTGACACTG 180 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 CTGGAAGCCGCAATAAAACGGGACCACCTATCTTCAGAATTTGAAACAACATCTGAGTTG 240 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 CTTAACTTGAACACACAAGATAATCCATCCCAGAATCATGTTGGATTGTCTGGATCTGCT 300 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 GCTGTACTTCCATGGGTTCCTGACACTACTGCTGCGATTGCACTACGAATGTTAGACCTA 360 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 GACTCAGCAGTATCATACATGCAAAATCAAAAGATGGAGAGAAATGGTGGAGATTTCATG 420 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 AAGCCTCCATCAAGGTTTGTGGCTGTTAAGAATGCACAAGAATTAGATCCACTGGAAACA 480 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 ACCGGTTTAGACCTTTTTGATGGAAGGTGGGCTACTGGTAGTGGCCGTAGGGGTCGTGGA 540 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 CGAGGAAGTAGAGGGGGTAGCAGGGGAGGCAGAGGCCGAAGTCGAGGTGGAAGGGTCCCA 600 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 AGAGGTATTAGCATCTCATCTAGGATTGGATTTAAGGATGAAAATGAAGCCTCAAGGAAG 660 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 AACACTCGTCGAGGGCGTACTCGTGGCCGTGGTCGTGGGCGAGGACGTCGAACTGTTAGG 720 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 TCACGGCAACCATCTGAGGGCAAAGGCAGATCAATTCCCAAGGAAAATTTGTTGGGGAGC 780 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 TTTAGCATGCTTAGCAATGCAAAGGCTGCCACTGTTGAGGAGTCTCCAAGGAGCTCAGGT 840 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 GCTGATGAATGGGGCTTGGAGAACAGAAGGCCATATATTGATGGTGATGAGAACAGTTCT 900 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 GGATCTCAGTTAGATCAATCAGAAGATAATGAGGAAAATGGCCAACCCATGGATGAGGAA 960 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 TATGATGAGCAGGTTCCAGATTATTCTAGAGGCTATTCTGGTGGCTCCAGGCCCCATGGC 1020 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 ATGATAGATGATGATGTGAGCGAAGAAGAGGATGAAGATGTGGAGGGCGATGATGATGGG 1080 consensus_7399#1 ------------------------------------------------------------ consensus_7399#0 GAGGAAGATGATGCGGACCGTGCAGTTGATGATGTTGATGCTGAGATGGACGAGGATGAT 1140 consensus_7399#1 --AGAGGACGAGACAAGGGGAGGAA--GATGATGCGGACGCTGAGATGGACGAGGATGAT 56 ** ** ** * * * * ******* ** ********************* consensus_7399#0 GATATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCT 1200 consensus_7399#1 GAAATAGGTGATGATGGTGAGGATGGTGGTGACGGTGGTGACGGTGTGGAGGCGAATGCT 116 ** ********************************************************* consensus_7399#0 GATGAAGATGAAGGCGGTTCCTCGTATTCATCGGAGTACAGCGACTAAGATTGGCCAGTA 1260 consensus_7399#1 GATGAAGATGAAGGCGGTTCCTTGTATTTATTGGAGTTCAGCGACTAAGATTGGCCCGTA 176 ********************** ***** ** ***** ****************** *** consensus_7399#0 GAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCAATAGATGTCTGAATCAAGTAC 1320 consensus_7399#1 GAGGCCTTAGCGTCCTATGCCGTTATCCCTAAATTTCCCATAGATGTTTGAATCAAGTAC 236 ************************************** ******** ************ consensus_7399#0 TGTTAGTGGGCATTACTTACCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTCTGTG 1380 consensus_7399#1 TGTTAGTGGGCATTACTTGCCCTTGTGGTTAAAATGCTAGACGCGGACCAGAGGTTTGTG 296 ****************** ************************************ **** consensus_7399#0 TGATAGATAGGCATGTAGTACTGATGTTCAGTACTGCATGCTTCTTTTGATTTTCGGCGT 1440 consensus_7399#1 TGATAGATAGGCATGTAGTACTGATGTTCAGTTCTGCATGCTTTTTTTGATTTTTGGGGT 356 ******************************** ********** ********** ** ** consensus_7399#0 AGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAGCTGTACTTTGCTGGTTTAAGGTGTTG 1500 consensus_7399#1 AGCCGAGCTGCCCAAACAACCGGGTAGTGTGAAACTGTACTTTGCTGGTTTAAGGTGTTG 416 ********************************* ************************** consensus_7399#0 GGATTGATGCGTACAATGTGCCAAGGCAAAGTACCAAGTTTACCAGCGGGGTTGCCTTTA 1560 consensus_7399#1 GGATTGATGCGTACAATGTGCCAAGGCAAAGTTCCCAGTTTTCCTGAAAAAAA------- 469 ******************************** ** ***** ** * consensus_7399#0 CATATTGTTACAAAAAAAAAA 1581 consensus_7399#1 ---------AAAAAAAAAAAA 481 * ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||