cluster # 7403

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Oryza sativa
cluster # 7403 cluster # 7403 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7403#0 length = 827 sequences # 1

consensus_7403#1 length = 470 sequences # 3

consensusID : consensus_7403#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 827
fasta sequence

                              [CCGCGCGCCATATCGCCACCGCCACCGCCCACCCGAAACCTCCCGCTCCTCTCGAACCTTTCCGAGGCGGCGAAACCCCCACTCCCCGCCGCGCTGCGCCGCGCCGCCGCGCCCTCTCCTCCCGGATCTCGCCGCCACGCGGCTGCGGGGTGGTCGGGGGTTCAAGGCGTACGGGTGGCGCGGCTAAATCCGCGGCGCCGCATTTGGTTGGGGGGATATGCCCAATTCTGTATGCGGCCGCCGGATTTGAGCGGGCGGAAGCGGTGGGCGGGCGAGCCGGCGAACCACTCCTCGAGCGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGTTCAACGAGCTTGCTTCACCTTCGTCTGGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGTTTATCTTAATGAAATTTGGTCGGCCTTGCTGGCCGACCTGGCAAAAAAATATATTTCCCCCTCCAGTTGTTAAAAATCTTAAGATACTAGCAGCATGTTCTTTTGAATTGTATTTATAGGTTTTTATTTTATTTTTCGTTGCATACAAGGCTAGTTCTCTATACATATTAGA]

[+] EMBL AK071573             [CCGCGCGCCATATCGCCACCGCCACCGCCCACCCGAAACCTCCCGCTCCTCTCGAACCTTTCCGAGGCGGCGAAACCCCCACTCCCCGCCGCGCTGCGCCGCGCCGCCGCGCCCTCTCCTCCCGGATCTCGCCGCCACGCGGCTGCGGGGTGGTCGGGGGTTCAAGGCGTACGGGTGGCGCGGCTAAATCCGCGGCGCCGCATTTGGTTGGGGGGATATGCCCAATTCTGTATGCGGCCGCCGGATTTGAGCGGGCGGAAGCGGTGGGCGGGCGAGCCGGCGAACCACTCCTCGAGCGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGTTCAACGAGCTTGCTTCACCTTCGTCTGGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGTTTATCTTAATGAAATTTGGTCGGCCTTGCTGGCCGACCTGGCAAAAAAATATATTTCCCCCTCCAGTTGTTAAAAATCTTAAGATACTAGCAGCATGTTCTTTTGAATTGTATTTATAGGTTTTTATTTTATTTTTCGTTGCATACAAGGCTAGTTCTCTATACATATTAGA]




>consensus_7403#0
CCGCGCGCCATATCGCCACCGCCACCGCCCACCCGAAACCTCCCGCTCCTCTCGAACCTT
TCCGAGGCGGCGAAACCCCCACTCCCCGCCGCGCTGCGCCGCGCCGCCGCGCCCTCTCCT
CCCGGATCTCGCCGCCACGCGGCTGCGGGGTGGTCGGGGGTTCAAGGCGTACGGGTGGCG
CGGCTAAATCCGCGGCGCCGCATTTGGTTGGGGGGATATGCCCAATTCTGTATGCGGCCG
CCGGATTTGAGCGGGCGGAAGCGGTGGGCGGGCGAGCCGGCGAACCACTCCTCGAGCGGG
GCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGTTCAAC
GAGCTTGCTTCACCTTCGTCTGGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTT
TGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCG
CAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCT
TTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTC
GCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGTTTATC
TTAATGAAATTTGGTCGGCCTTGCTGGCCGACCTGGCAAAAAAATATATTTCCCCCTCCA
GTTGTTAAAAATCTTAAGATACTAGCAGCATGTTCTTTTGAATTGTATTTATAGGTTTTT
ATTTTATTTTTCGTTGCATACAAGGCTAGTTCTCTATACATATTAGA

consensusID : consensus_7403#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 470
fasta sequence

                              [CGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGTTCAGACTGAGCATGCTCTCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGGGAGTATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAACGAGCTTGCTTCACCTTCGTCTG-GTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGT]

[+] EMBL CF303816             [CGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGTTCAGACTGAGCATGCTCTCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGGGAGTATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAACGAGCTTGCTTCACCTTCGTCTGNGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGT]
[+] EMBL CF304266             [CGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGTTCAGACTGAGCATGCTCTCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGGGAGTATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAACGAGCTTGCTTCACCTTCGTCTG GTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCTGCTTTCGGGAACCATT                                  ]
[+] EMBL CF304953             [CGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGTTCAGACTGAGCATGCTCTCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGGGAGTATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAACGAGCTTGCTTCACCTTCGTCTG GTTGCG                                                                                                                                                                                                                                                                           ]




>consensus_7403#1
CGGGGCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGT
TCAGACTGAGCATGCTCTCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGGGAG
TATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAACGAGCT
TGCTTCACCTTCGTCTGGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTTTGCAG
GTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCGCAAGC
AAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCTTTCTG
CATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTCGCCCT
GCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7403#0      CCGCGCGCCATATCGCCACCGCCACCGCCCACCCGAAACCTCCCGCTCCTCTCGAACCTT 60
consensus_7403#1      ------------------------------------------------------------
                                                                                  

consensus_7403#0      TCCGAGGCGGCGAAACCCCCACTCCCCGCCGCGCTGCGCCGCGCCGCCGCGCCCTCTCCT 120
consensus_7403#1      ------------------------------------------------------------
                                                                                  

consensus_7403#0      CCCGGATCTCGCCGCCACGCGGCTGCGGGGTGGTCGGGGGTTCAAGGCGTACGGGTGGCG 180
consensus_7403#1      -------------------------------------------------------CGGGG 5
                                                                              ** *

consensus_7403#0      CGGCTAAATCCGCGGCGCCGCATTTGGTTGGGGGGATATGCCCAATTCTGTATGCGGCCG 240
consensus_7403#1      CGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGGT----- 60
                      ** * *     * *  *  ***  *** **** **    *    *****  * *      

consensus_7403#0      CCGGATTTGAGCGGGCGGAAGCGGTGGGCGGGCGAGCCGGCGAACCACTCCTCGAGCGGG 300
consensus_7403#1      TCAGACT-GAGCATGCTC--TCAGCTTTCAAGGAACGTGGAAAGCAGACTGTTGAGCAGG 117
                       * ** * ****  **     * *    *  *  *   **  * *      * **** **

consensus_7403#0      GCGCCGACGCAGGAGAAGGAGCAGGTGGATGGGCGGGCGCGGTGGATTCTCCAGTTCAAC 360
consensus_7403#1      GAGT--ATATATCATGTGTTACCTTTTTTCTTTGGGGTGTGTGTGTGAGTACAGTTCAAC 175
                      * *   *   *  *   *   *   *        *** * *   *    * *********

consensus_7403#0      GAGCTTGCTTCACCTTCGTCTGGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTT 420
consensus_7403#1      GAGCTTGCTTCACCTTCGTCTGGTTGCGTGTGCGCGCGCACACGCTATGTCCACTATGTT 235
                      ************************************************************

consensus_7403#0      TGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCG 480
consensus_7403#1      TGCAGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGTAACATATATTTTCCCCTCG 295
                      ************************************************************

consensus_7403#0      CAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCT 540
consensus_7403#1      CAAGCAAAATTTTTAAAAGAAGCTAATGGCTAGTTTTCAGCACTAGTATCAGGTTTTTCT 355
                      ************************************************************

consensus_7403#0      TTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTC 600
consensus_7403#1      TTCTGCATGCGGATTGCTTTTTGGCAATTTTTTTAAGAACTGAGCCTTTTAGCAATTCTC 415
                      ************************************************************

consensus_7403#0      GCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGTTTATC 660
consensus_7403#1      GCCCTGCTTTCGGCAACCATTGTCAAAGTAACAATTTTGTAACTTGTACCCCTGT----- 470
                      *******************************************************     

consensus_7403#0      TTAATGAAATTTGGTCGGCCTTGCTGGCCGACCTGGCAAAAAAATATATTTCCCCCTCCA 720
consensus_7403#1      ------------------------------------------------------------
                                                                                  

consensus_7403#0      GTTGTTAAAAATCTTAAGATACTAGCAGCATGTTCTTTTGAATTGTATTTATAGGTTTTT 780
consensus_7403#1      ------------------------------------------------------------
                                                                                  

consensus_7403#0      ATTTTATTTTTCGTTGCATACAAGGCTAGTTCTCTATACATATTAGA 827
consensus_7403#1      -----------------------------------------------