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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1343 fasta sequence
[CCTTTTATAGTAATTCTTCCAGACTATAGCTAAAACTGCTGCATTACTACTCAACAGTAGTTGCAGCTTAAATAAATTGCCAAATTATCAGCTGGACGTCTCATCCTTAAGCACCTTGAATTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGAACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCTTTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTGCAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTGCGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAAGATTCCCAGGGCCGCTCTTCAAGTACCTGATTCACAATATGACACGGAGTTAGTAACTGAATTTTGATAAGTGAGAAACAGAATCATCGTCCTTATACCGAAACATTCCATAGTGTGATTCGAGGGTTCAGTCGGGGAAGTCAGGCTGTCAGGGTACTAAATAAAGTTGGTATATATCTGCTGAACTGGCAATATGCTGATTGCTATGAAGAGATTGCAGCATTAGCTGAACAATATGCCGATTGCTACAAAGGGCAGCAATGAAACATCCACAGTGAATATTCAGTAGACATATCCATCCATTTGATGCACCCACACCACATAATTTAGAGATTTAATTTGGCAAAACCACGGTTCAGGAGCAATTTGGCGAGCAAGAATTAAAGCCCAAACGAGCACGCATTGTGCAGTGCATCACCAAGTTTTCAGAGACTACTACAGCCTACGACGTGTGGGCAGCAAAATCTACGGACAAGTTACTGCAAAATCTACCTGATGTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGGGGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGCAGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGCCGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCCCTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGAGCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGACGACCAGGGCACGGAGCGAGCTCGACGGAGCAATCGACATGGTCGCTACGGGCTACGGCCTCCCTGGATCGCTCGCTGGTTTCCTTACCCTTTTTCCCGGTCGCCT]
[+] EMBL CB654188 [CCTTTTATAGTAATTCTTCCAGACTATAGCTAAAACTGCTGCATTACTACTCAACAGTAGTTGCAGCTTAAATAAATTGCCAAATTATCAGCTGGACGTCTCATCCTTAAGCACCTTGAATTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGAACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCTTTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTGCAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTGCGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAAGATTCCCAGGGCCGCTCTTCAAGTACCTGATTCACAATATGACACGGAGTTAGTAACTGAATTTTGATAAGTGAGAAACAGAATCATCGTCCTTATACCGAAACATTCCATAGTGTGATTCGAGGGTTCAGTCGGGGAAGTCAGGCTGTCAGGGTACTAAATAAAGTTGGTATATATCTGCTGAACTGGCAATATGCTGATTGCTATGAAGAGATTGCAGCATTAGCTGAACAATATGCCGATTGCTACAAAGGGCAGCAATGAAACATCCACAGTGAATATTCAGTAGACATATCCATCCATTTGATGCACCCACACCACATAATTTAGAGATTTAA ]
[-] EMBL CB654187 [ AGGGCAGCAATGAAACATCCACAGTGAATATTCAGTAGACATATCCATCCATTTGATGCACCCACACCACATAATTTAGAGATTTAATTTGGCAAAACCACGGTTCAGGAGCAATTTGGCGAGCAAGAATTAAAGCCCAAACGAGCACGCATTGTGCAGTGCATCACCAAGTTTTCAGAGACTACTACAGCCTACGACGTGTGGGCAGCAAAATCTACGGACAAGTTACTGCAAAATCTACCTGATGTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGGGGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGCAGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGCCGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCCCTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGAGCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGACGACCAGGGCACGGAGCGAGCTCGACGGAGCAATCGACATGGTCGCTACGGGCTACGGCCTCCCTGGATCGCTCGCTGGTTTCCTTACCCTTTTTCCCGGTCGCCT]
consensusID : consensus_7427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence
[TCTCATCCTTAAGCACATTGAATTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGAACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCTTTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTGCAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTGCGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAAGATTCCCAGGGCCGCTCTTCAAGTACCTGATGTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGGGGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGCAGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGCCGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCCCTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGAGCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGATGACCAGGGCACGGAGCGAGCTCGACGGAGCAATCGACATGGTCGCTACGGGCTA]
[-] EMBL AK109241 [TCTCATCCTTAAGCACATTGAATTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGAACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCTTTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTGCAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTGCGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAAGATTCCCAGGGCCGCTCTTCAAGTACCTGATGTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGGGGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGCAGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGCCGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCCCTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGAGCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGATGACCAGGGCACGGAGCGAGCTCGACGGAGCAATCGACATGGTCGCTACGGGCTA]
[+] EMBL AU225573 [ gccgctGCACATTGAATTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGAACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCTTTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTGCAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTGCGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAAGATTCCCAGGGacagcgg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7427#0 CCTTTTATAGTAATTCTTCCAGACTATAGCTAAAACTGCTGCATTACTACTCAACAGTAG 60
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 TTGCAGCTTAAATAAATTGCCAAATTATCAGCTGGACGTCTCATCCTTAAGCACCTTGAA 120
consensus_7427#1 --------------------------------------TCTCATCCTTAAGCACATTGAA 22
**************** *****
consensus_7427#0 TTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGA 180
consensus_7427#1 TTATTACAAATGAAATTGAGATACATAATTAATTTTCTCTTGTACAAATGACTGAAGGGA 82
************************************************************
consensus_7427#0 ACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCT 240
consensus_7427#1 ACTTAAGCAAAGCTCCTTCCTGATGGACGTCGAACGACCAATCAGCAGCAGGGCAGAGCT 142
************************************************************
consensus_7427#0 TTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTG 300
consensus_7427#1 TTTCTTAGTCACTCATGAAAGAGCATGCACCTACTGCGCTGCCCATAAGCTAAGATCCTG 202
************************************************************
consensus_7427#0 CAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTG 360
consensus_7427#1 CAAGAACTTCTAATCTTGAGCCTCTGATGGCCTGATGAGATTAAGGTCCTCCAAGTATTG 262
************************************************************
consensus_7427#0 CGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAA 420
consensus_7427#1 CGTTCTCGATGTCTTCTCTGCTAAGGGCATAGCTGAATCTCCTCTCTACGTCCTTGTCAA 322
************************************************************
consensus_7427#0 GATTCCCAGGGCCGCTCTTCAAGTACCTGATTCACAATATGACACGGAGTTAGTAACTGA 480
consensus_7427#1 GATTCCCAGGGCCGCTCTTCAAGTACCTGAT----------------------------- 353
*******************************
consensus_7427#0 ATTTTGATAAGTGAGAAACAGAATCATCGTCCTTATACCGAAACATTCCATAGTGTGATT 540
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 CGAGGGTTCAGTCGGGGAAGTCAGGCTGTCAGGGTACTAAATAAAGTTGGTATATATCTG 600
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 CTGAACTGGCAATATGCTGATTGCTATGAAGAGATTGCAGCATTAGCTGAACAATATGCC 660
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 GATTGCTACAAAGGGCAGCAATGAAACATCCACAGTGAATATTCAGTAGACATATCCATC 720
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 CATTTGATGCACCCACACCACATAATTTAGAGATTTAATTTGGCAAAACCACGGTTCAGG 780
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 AGCAATTTGGCGAGCAAGAATTAAAGCCCAAACGAGCACGCATTGTGCAGTGCATCACCA 840
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 AGTTTTCAGAGACTACTACAGCCTACGACGTGTGGGCAGCAAAATCTACGGACAAGTTAC 900
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 TGCAAAATCTACCTGATGTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGG 960
consensus_7427#1 -----------------GTGGAGGTCAGTGACGTCGAGGCTGAGGCGGGCGTGCCAGAGG 396
*******************************************
consensus_7427#0 GGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGC 1020
consensus_7427#1 GGCATCTCGGCGACCCAGACGGCGCGGTCCTCGCGGGTCTGGGAGAACCCGATGCTGCGC 456
************************************************************
consensus_7427#0 AGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGC 1080
consensus_7427#1 AGCCACGCCTCGATGCACGGCAGGCTGTGCGTGTACAGCGGCTTCTTCTTCTCCGGCAGC 516
************************************************************
consensus_7427#0 CGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCC 1140
consensus_7427#1 CGCTCCAGCCACTCGGCGTCCGACGGCAGCGCCGCCGCCCGCGCCACGACCGCCGCCCCC 576
************************************************************
consensus_7427#0 CTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGA 1200
consensus_7427#1 CTCCGCCGCCGCGCCCGCGCGTGCTGCACCGGTGCCGCCACTCCGCGGAGCCCTGGGCGA 636
************************************************************
consensus_7427#0 GCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGACGACCAGGGCACGGAGCGAGCTC 1260
consensus_7427#1 GCAGAGGGCGAGGAGGAGACGGAGGGGAGGATGGGGATGACCAGGGCACGGAGCGAGCTC 696
************************************* **********************
consensus_7427#0 GACGGAGCAATCGACATGGTCGCTACGGGCTACGGCCTCCCTGGATCGCTCGCTGGTTTC 1320
consensus_7427#1 GACGGAGCAATCGACATGGTCGCTACGGGCTA---------------------------- 728
********************************
consensus_7427#0 CTTACCCTTTTTCCCGGTCGCCT 1343
consensus_7427#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||