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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence
[CCTTTTTTTTTTTTTTTTGAACTGGCATTAAAAAAAGTACTCCTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAGACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGGCACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTTACAGAAGGAATATAAAAAACACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCTTGACCCTGAATTTCCACTCGCCATTGACGGCATCGAAAGAGATGAACTCAGCACCCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTGTGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCAC-GGCAGCTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTTCACGGTTATTGAATTCCACAATGGACTCCAGATCAAGGCCCCTCACGTCCGTTTCTCCAATAAACTTGATGCTACCGTAATCATGACGTCCCACAGCAAAATCCCTCACACGACTGCAGTAGCCTGGTTCAACACGTTCTTTGGCAGCAAGCTCCTCCAGACTAGGCTCTGTATAATAATCGGCATGCACTAGCTTAGGCACAAGCCTCTCAACAGAAGTACCATTCCCATGCCTTGTCACAGTATCAGGCTCATTTGATGCACGGTCATCACGCTGGAT]
[+] EMBL CB682473 [CCTTTTTTTTTTTTTTTTGAACTGGCATTAAAAAAAGTACTCCTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAGACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGGCACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTTACAGAAGGAATATAAAAAACACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCTTGACCCTGAATTTCCACTCGCCATTGACGGCATCGAAAGAGATGAACTCAGCACCCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTGTGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCAC GGCAGCTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTTCACGGTTATTGAATTCCACAATGGACTCCAGATCAAGGCCCCTCACGTCCGTTTCTCCAATAAACTTGATGCTACCGTAATCATGACGTCCCACAGCAAAATCCCTCACACGACTGCAGTAGCCTGGTTCAACACGTTCTTTGGCAGCAAGCTCCTCCAGACTAGGCTCTGTATAATAATCGGCATGCACTAGCTTAGGCACAAGCCTCTCAACAGAAGTACCATTCCCATGCCTTGTCACAGTATCAGGCTCATTTGATGCACGGTCATCACGCTGGAT]
[-] EMBL AU082863 [ TTAAAAAAAGTACTCATCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAGACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGGCACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTTACAGAAGGAATATAAAAAACACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCTTGACCCTGAATTTCCACTCGCCATTGACGGCATCGAAAGAGATGAACTCAGCACCCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTGTGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCACGGGCAGCTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTTCACGGTTATTGAATTCCACAATGGACTCCAGATCAAGGCCCCTCACGTCCGTTTCTCCAATAAACTTGATGCTACCGTAATCATGACGTCCCACAGCAAAATCCCTCACACGACTGCAGTAGCCTGGTTCAGCACGTTCTTTGGCAGCAAGCNCCTCCAGACTAGGCTCTGTATAATAATCGGCATGCACTAGC ]
consensusID : consensus_7430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence
[TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAGACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGGCACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTT-ACAGAAGGAATATA-AAAAACACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCT-TGACCCTGAATTTCCAC-TCG-CCATTGAC-GGCATCGAA-AGAGATGAACTCAGCACCCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTGTGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCACGGCAGCTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTTCACGGTTATTGAATTCCACAATGGACTCCAGATAAAGGCCCCTCACGTCCGTTTCTCCAATAAACTTG]
[-] EMBL CB000224 [TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAGACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGGCACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTT ACAGAAGGAATATA AAAAACACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCT TGACCCTGAATTTCCAC TCG CCATTGAC GGCATCGAA AGAGATGAACTCAGCACCCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTGTGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCACGGCAGCTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTTCACGGTTATTGAATTCCACAATGGACTCCAGATAAAGGCCCCTCACGTCCGTTTCTCCAATAAACTTG]
[-] EMBL BI808794 [ GTACAGAAGTACAAACGCAAAACCCATGCCAGGGCGAAAATAAGGAGGCACTACTACATCACCAGTTGAGCATCCTCCCCTACACAGTTCACAGAAGGAATATACAAAAACATGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCTGTGACCCTGAATTTCCACATCGCCCATGGACGGGGATCGAACAGAGATGAACTCAGGAACC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7430#0 -------------------------CCTTTTTTTTTTTTTTTTGAACTGGCATTAAAAAA 35
consensus_7430#1 TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
**************** * **
consensus_7430#0 AGTACTCCTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAG 95
consensus_7430#1 TTTTTTTTTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAG 120
* * ****************************************************
consensus_7430#0 ACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGG 155
consensus_7430#1 ACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGG 180
************************************************************
consensus_7430#0 CACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTTACAGAAGGAATATAAAAAA 215
consensus_7430#1 CACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTTACAGAAGGAATATAAAAAA 240
************************************************************
consensus_7430#0 CACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGA 275
consensus_7430#1 CACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGA 300
************************************************************
consensus_7430#0 AATGCTTGACCCTGAATTTCCACTCGCCATTGACGGCATCGAAAGAGATGAACTCAGCAC 335
consensus_7430#1 AATGCTTGACCCTGAATTTCCACTCGCCATTGACGGCATCGAAAGAGATGAACTCAGCAC 360
************************************************************
consensus_7430#0 CCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTG 395
consensus_7430#1 CCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTG 420
************************************************************
consensus_7430#0 TGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCACGGCAG 455
consensus_7430#1 TGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCACGGCAG 480
************************************************************
consensus_7430#0 CTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTT 515
consensus_7430#1 CTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTT 540
************************************************************
consensus_7430#0 CACGGTTATTGAATTCCACAATGGACTCCAGATCAAGGCCCCTCACGTCCGTTTCTCCAA 575
consensus_7430#1 CACGGTTATTGAATTCCACAATGGACTCCAGATAAAGGCCCCTCACGTCCGTTTCTCCAA 600
********************************* **************************
consensus_7430#0 TAAACTTGATGCTACCGTAATCATGACGTCCCACAGCAAAATCCCTCACACGACTGCAGT 635
consensus_7430#1 TAAACTTG---------------------------------------------------- 608
********
consensus_7430#0 AGCCTGGTTCAACACGTTCTTTGGCAGCAAGCTCCTCCAGACTAGGCTCTGTATAATAAT 695
consensus_7430#1 ------------------------------------------------------------
consensus_7430#0 CGGCATGCACTAGCTTAGGCACAAGCCTCTCAACAGAAGTACCATTCCCATGCCTTGTCA 755
consensus_7430#1 ------------------------------------------------------------
consensus_7430#0 CAGTATCAGGCTCATTTGATGCACGGTCATCACGCTGGAT 795
consensus_7430#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||