These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence [CCTTTTTTTTTTTTTTTTGAACTGGCATTAAAAAAAGTACTCCTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAGACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGGCACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTTACAGAAGGAATATAAAAAACACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCTTGACCCTGAATTTCCACTCGCCATTGACGGCATCGAAAGAGATGAACTCAGCACCCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTGTGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCAC-GGCAGCTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTTCACGGTTATTGAATTCCACAATGGACTCCAGATCAAGGCCCCTCACGTCCGTTTCTCCAATAAACTTGATGCTACCGTAATCATGACGTCCCACAGCAAAATCCCTCACACGACTGCAGTAGCCTGGTTCAACACGTTCTTTGGCAGCAAGCTCCTCCAGACTAGGCTCTGTATAATAATCGGCATGCACTAGCTTAGGCACAAGCCTCTCAACAGAAGTACCATTCCCATGCCTTGTCACAGTATCAGGCTCATTTGATGCACGGTCATCACGCTGGAT] [+] EMBL CB682473 [CCTTTTTTTTTTTTTTTTGAACTGGCATTAAAAAAAGTACTCCTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAGACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGGCACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTTACAGAAGGAATATAAAAAACACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCTTGACCCTGAATTTCCACTCGCCATTGACGGCATCGAAAGAGATGAACTCAGCACCCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTGTGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCAC GGCAGCTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTTCACGGTTATTGAATTCCACAATGGACTCCAGATCAAGGCCCCTCACGTCCGTTTCTCCAATAAACTTGATGCTACCGTAATCATGACGTCCCACAGCAAAATCCCTCACACGACTGCAGTAGCCTGGTTCAACACGTTCTTTGGCAGCAAGCTCCTCCAGACTAGGCTCTGTATAATAATCGGCATGCACTAGCTTAGGCACAAGCCTCTCAACAGAAGTACCATTCCCATGCCTTGTCACAGTATCAGGCTCATTTGATGCACGGTCATCACGCTGGAT] [-] EMBL AU082863 [ TTAAAAAAAGTACTCATCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAGACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGGCACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTTACAGAAGGAATATAAAAAACACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCTTGACCCTGAATTTCCACTCGCCATTGACGGCATCGAAAGAGATGAACTCAGCACCCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTGTGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCACGGGCAGCTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTTCACGGTTATTGAATTCCACAATGGACTCCAGATCAAGGCCCCTCACGTCCGTTTCTCCAATAAACTTGATGCTACCGTAATCATGACGTCCCACAGCAAAATCCCTCACACGACTGCAGTAGCCTGGTTCAGCACGTTCTTTGGCAGCAAGCNCCTCCAGACTAGGCTCTGTATAATAATCGGCATGCACTAGC ] consensusID : consensus_7430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence [TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAGACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGGCACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTT-ACAGAAGGAATATA-AAAAACACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCT-TGACCCTGAATTTCCAC-TCG-CCATTGAC-GGCATCGAA-AGAGATGAACTCAGCACCCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTGTGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCACGGCAGCTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTTCACGGTTATTGAATTCCACAATGGACTCCAGATAAAGGCCCCTCACGTCCGTTTCTCCAATAAACTTG] [-] EMBL CB000224 [TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAGACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGGCACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTT ACAGAAGGAATATA AAAAACACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCT TGACCCTGAATTTCCAC TCG CCATTGAC GGCATCGAA AGAGATGAACTCAGCACCCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTGTGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCACGGCAGCTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTTCACGGTTATTGAATTCCACAATGGACTCCAGATAAAGGCCCCTCACGTCCGTTTCTCCAATAAACTTG] [-] EMBL BI808794 [ GTACAGAAGTACAAACGCAAAACCCATGCCAGGGCGAAAATAAGGAGGCACTACTACATCACCAGTTGAGCATCCTCCCCTACACAGTTCACAGAAGGAATATACAAAAACATGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGAAATGCTGTGACCCTGAATTTCCACATCGCCCATGGACGGGGATCGAACAGAGATGAACTCAGGAACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7430#0 -------------------------CCTTTTTTTTTTTTTTTTGAACTGGCATTAAAAAA 35 consensus_7430#1 TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 **************** * ** consensus_7430#0 AGTACTCCTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAG 95 consensus_7430#1 TTTTTTTTTCCATGGATCTATTGTTTCACATTACCTCAGCTATCAAGGCACAATTTGCAG 120 * * **************************************************** consensus_7430#0 ACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGG 155 consensus_7430#1 ACACCATGAACTGTACAGAAGTACAAACGCAAAACCCATGCCAGGACGAAAATAAGGAGG 180 ************************************************************ consensus_7430#0 CACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTTACAGAAGGAATATAAAAAA 215 consensus_7430#1 CACTACTTCATCACCAGTTGAGCATCCTCCCCTACACAGTTACAGAAGGAATATAAAAAA 240 ************************************************************ consensus_7430#0 CACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGA 275 consensus_7430#1 CACGAAGGAAAGAGCACTAGCAAGAGACGATTTCAGCTTCACCAAAGCCATAGGAGCTGA 300 ************************************************************ consensus_7430#0 AATGCTTGACCCTGAATTTCCACTCGCCATTGACGGCATCGAAAGAGATGAACTCAGCAC 335 consensus_7430#1 AATGCTTGACCCTGAATTTCCACTCGCCATTGACGGCATCGAAAGAGATGAACTCAGCAC 360 ************************************************************ consensus_7430#0 CCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTG 395 consensus_7430#1 CCTGCTCCTCAGCTTTCTTCACCAGCATCTCCTTGTACTTGTCCACCCTCGGACCCTCTG 420 ************************************************************ consensus_7430#0 TGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCACGGCAG 455 consensus_7430#1 TGTACTGATCCCCCGTCTTCTTGTTCATGCACTTGATATTGAGAAGGGTCACCACGGCAG 480 ************************************************************ consensus_7430#0 CTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTT 515 consensus_7430#1 CTTTATTCAGACCCTCACCAACAGGGGGCTTCTTGCTATCGTCCTTGTACACGATCACTT 540 ************************************************************ consensus_7430#0 CACGGTTATTGAATTCCACAATGGACTCCAGATCAAGGCCCCTCACGTCCGTTTCTCCAA 575 consensus_7430#1 CACGGTTATTGAATTCCACAATGGACTCCAGATAAAGGCCCCTCACGTCCGTTTCTCCAA 600 ********************************* ************************** consensus_7430#0 TAAACTTGATGCTACCGTAATCATGACGTCCCACAGCAAAATCCCTCACACGACTGCAGT 635 consensus_7430#1 TAAACTTG---------------------------------------------------- 608 ******** consensus_7430#0 AGCCTGGTTCAACACGTTCTTTGGCAGCAAGCTCCTCCAGACTAGGCTCTGTATAATAAT 695 consensus_7430#1 ------------------------------------------------------------ consensus_7430#0 CGGCATGCACTAGCTTAGGCACAAGCCTCTCAACAGAAGTACCATTCCCATGCCTTGTCA 755 consensus_7430#1 ------------------------------------------------------------ consensus_7430#0 CAGTATCAGGCTCATTTGATGCACGGTCATCACGCTGGAT 795 consensus_7430#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||