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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7441#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1338 fasta sequence
[ACACTCATTCTCGGTGTCTCTCACTCGCTCTGTACGTACGTTGCCGCCTGCCCATGGCGTCGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGGCATTGCGGAGCAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGTTTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGCCGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGGGGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGG-AGGCTCCCGGTGCTCATCTACTTCCACGGCGGCGCGTTCGTCGTCG-AGTCGGCGTTCGACCCGGTGTACCACAACTACCTCAACGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTACCGCCTGGCCCCCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGT-GGACGGTGCTCAGGTGGGTGGCCGCCGACATGCAGCGCGGCGCGGACTCGTGGCTCGCGAGGCGCGGGGACGCGTCGCGCCTGTTCGTGGCCGGGGACAGCGCCGGCGGCAACATCGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCTGAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCATATGATCNATTCGTTACGTACCTCCGTGAAACTTGGAAGGGGAAAACGCATGTAAATTAAAACGTAAAAAA]
[+] EMBL AK105839 [ACACTCATTCTCGGTGTCTCTCACTCGCTCTGTACGTACGTTGCCGCCTGCCCATGGCGTCGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGGCATTGCGGAGCAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGTTTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGCCGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGGGGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGG AGGCTCCCGGTGCTCATCTACTTCCACGGCGGCGCGTTCGTCGTCG AGTCGGCGTTCGACCCGGTGTACCACAACTACCTCAACGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTACCGCCTGGCCCCCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGT GGACGGTGCTCAGGTGGGTGGCCGCCGACATGCAGCGCGGCGCGGACTCGTGGCTCGCGAGGCGCGGGGACGCGTCGCGCCTGTTCGTGGCCGGGGACAGCGCCGGCGGCAACATCGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCTGAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCG ]
[+] EMBL AU065257 [ GGTGTCTCTCACTCGCTTTGTACGTACGTTGCCGCCTGCCCATGGCGTCGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGGCATTGCGGA CAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGTTTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGCCGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGGGGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGGAAAGCTCCCGGTGCTCATCTACTTCCACGGCGGCGCGTTCGTCGTCGAAGTCGGCGTTCGACCCGGTGTACCACAACTACCTCAANGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTAACGCCTGGCCCCCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGTGGGAAGGTGCTCANGTGGGTGGCCGCCGAAATGCAANGCGGCGCGGACTCGTGG ]
[+] EMBL AU095246 [ CGCGTACNTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCTGAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCATATGATCNATTCGTTACGTACCTCCGTGAAACTTGGAAGGGGAAAACGCATGTAAATTAAAACGTAAAAAA]
consensusID : consensus_7441#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[ACATTGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTTTGAATTTTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCAAAGGTACACTTCGTTACGTACCTCCGTGAAAAAAAAAAAAGG]
[-] EMBL CB682160 [ACATTGCGCACAACCTCGCGATGCGCGCGGGGCAGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGAAATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGATGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCACCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGTACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCGGCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGGCCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTTTGAATTTTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGTAATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTTTCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAGAATTGCAAAGGTACACTTCGTTACGTACCTCCGTGAAAAAAAAAAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7441#0 ACACTCATTCTCGGTGTCTCTCACTCGCTCTGTACGTACGTTGCCGCCTGCCCATGGCGT 60
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 CGCGGTCGCTGTTCGCGTTGCTGGTAGTGGCGGCGGCGATGTGTGCGTCGGTGGCGTCGG 120
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 CATTGCGGAGCAGGGCGGCGACCGACCCGAACATGGAGGTGAAGTTCGACTTCACGCCGT 180
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TTCTGATCCAGTACAGGAGTGGCAGGGTGCAGAGGCTGATGGGGACGACGGTGGTGGCGC 240
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 CGTCGCTGGACGTGCGCACCGGGGTGGTGTCCAAGGACGTGGTCGTCGACCGGAGCACGG 300
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 GGCTCGCGGTGCGGCTGTACCGGCCGAAGCACCGGGGCGGGAGGCTCCCGGTGCTCATCT 360
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 ACTTCCACGGCGGCGCGTTCGTCGTCGAGTCGGCGTTCGACCCGGTGTACCACAACTACC 420
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TCAACGCGCTCGCGGCCAAGGCCGGCGCCATCGCGGTGTCGGTGAACTACCGCCTGGCCC 480
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 CCGAGCACCCGCTCCCCGCGGCGTACGACGACGCGTGGACGGTGCTCAGGTGGGTGGCCG 540
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 CCGACATGCAGCGCGGCGCGGACTCGTGGCTCGCGAGGCGCGGGGACGCGTCGCGCCTGT 600
consensus_7441#1 ------------------------------------------------------------
consensus_7441#0 TCGTGGCCGGGGACAGCGCCGGCGGCAACATCGCGCACAACCTCGCGATGCGCGCGGGGC 660
consensus_7441#1 ---------------------------ACATTGCGCACAACCTCGCGATGCGCGCGGGGC 33
**** ****************************
consensus_7441#0 AGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGA 720
consensus_7441#1 AGCACGGCGGCGGCGCGACGATCCGCGGCGTGGCGCTGCTGGACCCGTACTTCCTGGGGA 93
************************************************************
consensus_7441#0 AATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGA 780
consensus_7441#1 AATACGTCGACCCGACGGCGCAGCGGGCGTGGGGTTTCATCTGCGCGGGGAGGTACGGGA 153
************************************************************
consensus_7441#0 TGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCA 840
consensus_7441#1 TGGAGCACCCGTACGTGAACCCGATGGCGCTGCCGGCGGCGTCGTGGAGGCGCCTCGCCA 213
************************************************************
consensus_7441#0 CCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGT 900
consensus_7441#1 CCTCCCGCGTGCTGATGACGGTGTCCGACCTCGACCGGCTCGGCCCGTGGCAGCGCGCGT 273
************************************************************
consensus_7441#0 ACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCG 960
consensus_7441#1 ACGTGGACGCGCTCCGTGGCAGCGGGTGGCCCGGGGAGGCGCGGCTGTACGTGACGCCCG 333
************************************************************
consensus_7441#0 GCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGG 1020
consensus_7441#1 GCGAGGGCCACTGCTACTTCCTCAACAACCTCGAGTCGCCCAAGGAAGCCATGCATATGG 393
************************************************************
consensus_7441#0 CCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTCT 1080
consensus_7441#1 CCACGCTCGCCGCGTTCATTAACCGCGACACCTAGCAAGCACATCACTAGCAGCAGCTTT 453
********************************************************** *
consensus_7441#0 GAATTCTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGT 1140
consensus_7441#1 GAATTTTGATCCATCTTCAACGTGGCAGCTCAGCTACACACCCGAGTAAAGCCATACTGT 513
***** ******************************************************
consensus_7441#0 AATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTT 1200
consensus_7441#1 AATGAGTACTCCTAGTAACCACATATAGCTTATAGTGTTACTACCATTTTTTTCTGTCTT 573
************************************************************
consensus_7441#0 TCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAG 1260
consensus_7441#1 TCTTCATCGAGGCAGATCGACATCCGTACGTGTGAGTGTGATTTCAGTGTTTCGACTGAG 633
************************************************************
consensus_7441#0 AATTGCATATGATCNATTCGTTACGTACCTCCGTGAAACTTGGAAGGGGAAAACGCATGT 1320
consensus_7441#1 AATTGCAAAGGTACACTTCGTTACGTACCTCCGTGAAAAAAAAAAAAGG----------- 682
******* * * * ********************** ** **
consensus_7441#0 AAATTAAAACGTAAAAAA 1338
consensus_7441#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||