Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7450 cluster # 7450       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7450#0 length = 929 sequences # 4  
consensusID : consensus_7450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 929
fasta sequence 
                              [GAGTAGAAACTCAAGCCACTGCTGCAGCGCGACTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTATGAACAAGCCAACATAGGATCAGTACAAGCTTAATTGGTATCTTCATCCTCATCACACACACAGGAAATTAAAGAGAGCTCATCAACTTTAACCCATATGATTTCTCTGCGCAGGTGTGGCCGATTGAAGGCATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAA-GGTCGGGTTCGTCTACCGTGAGAACCACA-GGTCTCCTGNGTACTATGATGGCAGGTACTGGACCATGTGGAAGCTGCCTATGTTCGGATGCACTGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCATATCCAGATGCATTTGTTCGCATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCACTAAGATTTTACCGGCCGTGCTCTGCTTTTGTGTTTGTTTCACCTGAAATCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGA]

[+] EMBL CF335057             [GAGTAGAAACTCAAGCCACTGCTGCAGCGCGACTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTATGAACAAGCCAACATAGGATCAGTACAAGCTTAATTGGTATCTTCATCCTCATCACACACACAGGAAATTAAAGAGAGCTCATCAACTTTAACCCATATGATTTCTCTGCGCAGGTGTGGCCGATTGAAGGCATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAA GGTCGGGTTCGTCTACCGTGAGAACCACAGGGTCTCCTGNGTACTATGATGGCAGGTACTGGACCATGTGGAAGCTGCCTATGTTCGGATGCACTGATGCCACCCAGGTGCTCAA                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF333255             [GAGTAGAAACTCAAGCCACTGCTGCAGCGCGACTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTATGAACAAGCCAACATAGGATCAGTACAAGCTTAATTGGTATCTTCATCCTCATCACACACACAGGAAATTAAAGAGAGCTCATCAACTTTAACCCATATGATTTCTCTGCGCAGGTGTGGCCGATTGAAGGCATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGGTCGGGTTCGTCTACCGTGAGAACCACA GGTCTCCTGNGTACTATGATGGCAGGTACTGGACCATGTGGAAGCTGCCTATGTTCGGATGCACTGATGCCACCCAGGTGCTCA                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF335269             [                            gtGACTCTGCTCTAGCACCTCACCAAGCAGAAAGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCCCTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTATGAACAAGCCAACATAGGATCAGTACAAGCTTAATTGGTATCTTCATCCTCATCACACACACAGGAAATTAAAGAGAGCTCATCAACTTTAACCCATATGATTTCTCTGCGCAGGTGTGGCCGATTGAAGGCATCAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCAGATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAA GGTCGGGTTCGTCTACCGTGAGAACCACA GGTCTCCTGGGTACTATGATGGCAGGTACTGGACCATGTGGAAGCTGCCTATGTTCGGATGCACTGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCATATCCAGATGCATTTGTTCGCATCATCGGCTTC                                                                                                                                                                                                                                                                                              ]
[-] EMBL CF298952             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGTCGGGTTCGTCTACCGTGAGAACCACA GGTCTCCTGGGTACTATGATGGCAGGTACTGGACCATGTGGAAGCTGCCTATGTTCGGATGCACTGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCATATCCAGATGCATTCGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCACTAAGATTTTACCGGCCGTGCTCTGCTTTTGTGTTTGTTTCACCTGAAATCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGACTATATGTTGTTGGGTGAGGCATATGTGA]




>consensus_7450#0
GAGTAGAAACTCAAGCCACTGCTGCAGCGCGACTCTGCTCTAGCACCTCACCAAGCAGAA
AGCTAGAGAGCTAGCAATGGCGCCCACCGTGATGGCCTCGTCGGCCACCTCCGTTGCTCC
CTTCCAGGGGCTCAAATCCACCGCCGGGCTCCCCGTCAGCCGCCGCTCCAACAGCGCCGG
CCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGCTGTATGCAGGTATGAACAAGCCAACA
TAGGATCAGTACAAGCTTAATTGGTATCTTCATCCTCATCACACACACAGGAAATTAAAG
AGAGCTCATCAACTTTAACCCATATGATTTCTCTGCGCAGGTGTGGCCGATTGAAGGCAT
CAAGAAGTTTGAGACCCTGTCGTACCTGCCACCGCTCACGGTCGAGGACCTCTTGAAGCA
GATCGAGTACCTGCTCCGGTCCAAATGGGTGCCTTGCCTCGAGTTTAGTAAGGTCGGGTT
CGTCTACCGTGAGAACCACAGGTCTCCTGNGTACTATGATGGCAGGTACTGGACCATGTG
GAAGCTGCCTATGTTCGGATGCACTGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGC
CAAGAAGGCATATCCAGATGCATTTGTTCGCATCATCGGCTTCGACAACGTCAGGCAGGT
GCAGCTCATCAGCTTCATCGCCTACAAGCCCCCGGGCTGCGAGGAGTCTGGTGGCAACTA
AGCCGTCATCGTCATATATAGCCTTGTTTAATTGTTCATCTCTGATTCGATGATGTCTCC
CACCTTGTTTCGTGTGTTCCCAGTTTGTTCATCACTAAGATTTTACCGGCCGTGCTCTGC
TTTTGTGTTTGTTTCACCTGAAATCTCTCTGACTTGATGTAAGAGTGGTATCTGCTACGA
CTATATGTTGTTGGGTGAGGCATATGTGA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)