cluster # 7455

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Oryza sativa
cluster # 7455 cluster # 7455 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7455#0 length = 895 sequences # 3

consensus_7455#1 length = 434 sequences # 1

consensusID : consensus_7455#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 895
fasta sequence

                              [AATTTTGTCATAATCGGCTGCTTCTTCGCTTCAATTCTGTGTTGGTAGCAGGCGACGCTCGGTGTCTTAGTTCATGGCTCGGAGGGATCAGCTGGTCTCTTTCCTCTGCTTCTTCCTGATCGTCTCTGCCGTCGCCGGCGGCTTGTGCGTCTCGGCCACCGTGCTCCCGATGCGGGTGGGGAAGCAGTACGTCGTCGGCGGCCGTAGCGGGTGGAGGACGCCGCCGCCGGCTAGCGTCGACTTGTACGCCAAGTGGGCCGCCGGCATCCGCTTCTACGTCGCCGACTCCATTGAGTTCGTGTACAAGAACGATTCCGT-GGTGAAGGTGGACAAGTTCGGGTACTACCACTGCAACGCGACGGCGGCGGCGGCCAACGACGGCAGCGTGCTCTTCCTCCTCGACGCCCCCGGCTTCGCCTACTTCTCCAGCGCCGACGCCGATCACTGCAAGAAGGGCCAGCGCCTCATGATCAACGTCGACTCCGCCCCGTCGCCATCGCCTTCCCCGAGCCCGGCGCCCCAAGAAGCCGCAACGGCGAGCGCCGCAACGTCGTCGTCGGCGGCGACAGCGGCTCACGCATTGCTCCTGGCCGCGATGGCCATGATGGGCTTGATTCTTGGAGAGTGGTAGTAACAACAGAGTTTGCATTGAGCTAGGCCATCAGGGTGTTAGTTAATTAGGATGGTTAATTACTTCGGTGCAGTATGGAACGTACTGGCTGGAGCTTAATTACCGTCGCTGAACTGAATAATTTCGATGTGAATTAGACGATTAGTTGTTGATTTGTCGCTTTAGAATCGAAGAAGAAATTAAGATCTCTCCATTTTCAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAGCGGC]

[+] EMBL AK072932             [AATTTTGTCATAATCGGCTGCTTCTTCGCTTCAATTCTGTGTTGGTAGCAGGCGACGCTCGGTGTCTTAGTTCATGGCTCGGAGGGATCAGCTGGTCTCTTTCCTCTGCTTCTTCCTGATCGTCTCTGCCGTCGCCGGCGGCTTGTGCGTCTCGGCCACCGTGCTCCCGATGCGGGTGGGGAAGCAGTACGTCGTCGGCGGCCGTAGCGGGTGGAGGACGCCGCCGCCGGCTAGCGTCGACTTGTACGCCAAGTGGGCCGCCGGCATCCGCTTCTACGTCGCCGACTCCATTGAGTTCGTGTACAAGAACGATTCCGT GGTGAAGGTGGACAAGTTCGGGTACTACCACTGCAACGCGACGGCGGCGGCGGCCAACGACGGCAGCGTGCTCTTCCTCCTCGACGCCCCCGGCTTCGCCTACTTCTCCAGCGCCGACGCCGATCACTGCAAGAAGGGCCAGCGCCTCATGATCAACGTCGACTCCGCCCCGTCGCCATCGCCTTCCCCGAGCCCGGCGCCCCAAGAAGCCGCAACGGCGAGCGCCGCAACGTCGTCGTCGGCGGCGACAGCGGCTCACGCATTGCTCCTGGCCGCGATGGCCATGATGGGCTTGATTCTTGGAGAGTGGTAGTAACAACAGAGTTTGCATTGAGCTAGGCCATCAGGGTGTTAGTTAATTAGGATGGTTAATTACTTCGGTGCAGTATGGAACGTACTGGCTGGAGCTTAATTACCGTCGCTGAACTGAATAATTTCGATGTGAATTAGACGATTAGTTGTTGATTTGTCGCTTTAGAATCGAAGAAGAAATTAAGATCTCTCC                                                                        ]
[+] EMBL C73215               [                          CGCTTCAATTCTGTGTTGGTAGCAGGCGACGCTCGGTGTCTTAGTTCATGGCTCGGAGGGATCAGCTGGTCTCTTTCCTCTGCTTCTTCCTGATCGTTTCTGCCGTCGCCGGCGGCTTGTGCGTCTCGGNCACCGTGCTCCCNATGCGGGTGGGGAAGCAGTACGTCGTCGGCGGCCGTAGCGGGTGGAGGACGCCGCCGCCGG TAGCNTCGACTTGTACGCCAAGTGGGCCGCCGGCATCCGCTTCTACGTCGCCGACTCCATTNAGTTCGTGTACAAGAACGATTCCNTGGGTGAAGGTGGACAAGTTCGGGTACTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AU225391             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gGGCGAGCGCCGCAACGTCGTCGTCGGCGGCGACAGCGGCTCACGCATTGCTCCTGGCCGCGATGGCCATGATGGGCTTGATTCTTGGAGAGTGGTAGTAACAACAGAGTTTGCATTGAGCTAGGCCATCAGGGTGTTAGTTAATTAGGATGGTTAATTACTTCGGTGCAGTATGGAACGTACTGGCTGGAGCTTAATTACCGTCGCTGAACTGAATAATTTCGATGTGAATTAGACGATTAGTTGTTGATTTGTCGCTTTAGAATCGAAGAAGAAATTAAGATCTCTCCATTTTCAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAGCGGC]




>consensus_7455#0
AATTTTGTCATAATCGGCTGCTTCTTCGCTTCAATTCTGTGTTGGTAGCAGGCGACGCTC
GGTGTCTTAGTTCATGGCTCGGAGGGATCAGCTGGTCTCTTTCCTCTGCTTCTTCCTGAT
CGTCTCTGCCGTCGCCGGCGGCTTGTGCGTCTCGGCCACCGTGCTCCCGATGCGGGTGGG
GAAGCAGTACGTCGTCGGCGGCCGTAGCGGGTGGAGGACGCCGCCGCCGGCTAGCGTCGA
CTTGTACGCCAAGTGGGCCGCCGGCATCCGCTTCTACGTCGCCGACTCCATTGAGTTCGT
GTACAAGAACGATTCCGTGGTGAAGGTGGACAAGTTCGGGTACTACCACTGCAACGCGAC
GGCGGCGGCGGCCAACGACGGCAGCGTGCTCTTCCTCCTCGACGCCCCCGGCTTCGCCTA
CTTCTCCAGCGCCGACGCCGATCACTGCAAGAAGGGCCAGCGCCTCATGATCAACGTCGA
CTCCGCCCCGTCGCCATCGCCTTCCCCGAGCCCGGCGCCCCAAGAAGCCGCAACGGCGAG
CGCCGCAACGTCGTCGTCGGCGGCGACAGCGGCTCACGCATTGCTCCTGGCCGCGATGGC
CATGATGGGCTTGATTCTTGGAGAGTGGTAGTAACAACAGAGTTTGCATTGAGCTAGGCC
ATCAGGGTGTTAGTTAATTAGGATGGTTAATTACTTCGGTGCAGTATGGAACGTACTGGC
TGGAGCTTAATTACCGTCGCTGAACTGAATAATTTCGATGTGAATTAGACGATTAGTTGT
TGATTTGTCGCTTTAGAATCGAAGAAGAAATTAAGATCTCTCCATTTTCAATGCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAGCGGC

consensusID : consensus_7455#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [GGCGCCCGCCCCGGCGGCGTCGCCCATCGCGAAACCTCCTGCCGCCGTGACGGCGGCCACGCCACCGCCGCCGCCGCCGCCGCCGTCGCCATCGCCTTCCCCGAGCCCGGCGCCCCAAGAAGCCGCAACGGCGAGCGCCGCAACGTCGTCGTCGGCGGCGACAGCGGCTCACGCATTGCTCCTGGCCGCGATGGCCATGATGGGCTTGATTCTTGGAGAGTGGTAGTAACAACAGAGTTTGCATTTGAGCTAGGCCATCAGGGTGTTAGTTAATTAGGATGGTTAATTACTTCGGTGCAGTATGGAACGTACTGGCTGGAGCTTAATTACCGTCGCTGAACTGAATAATTTCGATGTGAATTAGACGATTAGTTGTTGATTTGTCGCTTTAGAATCGAAGAAGAAATTAAGATCTCTCCATTTTCATGCAAAAA]

[+] EMBL AU182518             [GGCGCCCGCCCCGGCGGCGTCGCCCATCGCGAAACCTCCTGCCGCCGTGACGGCGGCCACGCCACCGCCGCCGCCGCCGCCGCCGTCGCCATCGCCTTCCCCGAGCCCGGCGCCCCAAGAAGCCGCAACGGCGAGCGCCGCAACGTCGTCGTCGGCGGCGACAGCGGCTCACGCATTGCTCCTGGCCGCGATGGCCATGATGGGCTTGATTCTTGGAGAGTGGTAGTAACAACAGAGTTTGCATTTGAGCTAGGCCATCAGGGTGTTAGTTAATTAGGATGGTTAATTACTTCGGTGCAGTATGGAACGTACTGGCTGGAGCTTAATTACCGTCGCTGAACTGAATAATTTCGATGTGAATTAGACGATTAGTTGTTGATTTGTCGCTTTAGAATCGAAGAAGAAATTAAGATCTCTCCATTTTCATGCAAAAA]




>consensus_7455#1
GGCGCCCGCCCCGGCGGCGTCGCCCATCGCGAAACCTCCTGCCGCCGTGACGGCGGCCAC
GCCACCGCCGCCGCCGCCGCCGCCGTCGCCATCGCCTTCCCCGAGCCCGGCGCCCCAAGA
AGCCGCAACGGCGAGCGCCGCAACGTCGTCGTCGGCGGCGACAGCGGCTCACGCATTGCT
CCTGGCCGCGATGGCCATGATGGGCTTGATTCTTGGAGAGTGGTAGTAACAACAGAGTTT
GCATTTGAGCTAGGCCATCAGGGTGTTAGTTAATTAGGATGGTTAATTACTTCGGTGCAG
TATGGAACGTACTGGCTGGAGCTTAATTACCGTCGCTGAACTGAATAATTTCGATGTGAA
TTAGACGATTAGTTGTTGATTTGTCGCTTTAGAATCGAAGAAGAAATTAAGATCTCTCCA
TTTTCATGCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7455#0      AATTTTGTCATAATCGGCTGCTTCTTCGCTTCAATTCTGTGTTGGTAGCAGGCGACGCTC 60
consensus_7455#1      ------------------------------------------------------------
                                                                                  

consensus_7455#0      GGTGTCTTAGTTCATGGCTCGGAGGGATCAGCTGGTCTCTTTCCTCTGCTTCTTCCTGAT 120
consensus_7455#1      ------------------------------------------------------------
                                                                                  

consensus_7455#0      CGTCTCTGCCGTCGCCGGCGGCTTGTGCGTCTCGGCCACCGTGCTCCCGATGCGGGTGGG 180
consensus_7455#1      ------------------------------------------------------------
                                                                                  

consensus_7455#0      GAAGCAGTACGTCGTCGGCGGCCGTAGCGGGTGGAGGACGCCGCCGCCGGCTAGCGTCGA 240
consensus_7455#1      ------------------------------------------------------------
                                                                                  

consensus_7455#0      CTTGTACGCCAAGTGGGCCGCCGGCATCCGCTTCTACGTCGCCGACTCCATTGAGTTCGT 300
consensus_7455#1      ------------------------------------------------------------
                                                                                  

consensus_7455#0      GTACAAGAACGATTCCGTGGTGAAGGTGGACAAGTTCGGGTACTACCACTGCAACGCGAC 360
consensus_7455#1      ------------------------------------------------------------
                                                                                  

consensus_7455#0      GGCGGCGGCGGCCAACGACGGCAGCGTGCTCTTCCTCCTCGACGCCCCCGGCTTCGCCTA 420
consensus_7455#1      -------------------------------------------GGCGCCCGCCCCGGCGG 17
                                                                 * * ** **  ** *  

consensus_7455#0      CTTCTCCAGCGCCGACGCCGATCACTGCAAGAAGGGCCAGCGCCTCATGATCAACGTCGA 480
consensus_7455#1      CGTCGCCCATCGCGAAACCTCCTGCCGCCGTGACGGCGGCCACGCCACCGCCGCCGCCGC 77
                      * ** **     ***  **     * **    * ***   * *  **    *  ** ** 

consensus_7455#0      CTCCGCCCCGTCGCCATCGCCTTCCCCGAGCCCGGCGCCCCAAGAAGCCGCAACGGCGAG 540
consensus_7455#1      CGCCGCC--GTCGCCATCGCCTTCCCCGAGCCCGGCGCCCCAAGAAGCCGCAACGGCGAG 135
                      * *****  ***************************************************

consensus_7455#0      CGCCGCAACGTCGTCGTCGGCGGCGACAGCGGCTCACGCATTGCTCCTGGCCGCGATGGC 600
consensus_7455#1      CGCCGCAACGTCGTCGTCGGCGGCGACAGCGGCTCACGCATTGCTCCTGGCCGCGATGGC 195
                      ************************************************************

consensus_7455#0      CATGATGGGCTTGATTCTTGGAGAGTGGTAGTAACAACAGAGTTTGCATT-GAGCTAGGC 659
consensus_7455#1      CATGATGGGCTTGATTCTTGGAGAGTGGTAGTAACAACAGAGTTTGCATTTGAGCTAGGC 255
                      ************************************************** *********

consensus_7455#0      CATCAGGGTGTTAGTTAATTAGGATGGTTAATTACTTCGGTGCAGTATGGAACGTACTGG 719
consensus_7455#1      CATCAGGGTGTTAGTTAATTAGGATGGTTAATTACTTCGGTGCAGTATGGAACGTACTGG 315
                      ************************************************************

consensus_7455#0      CTGGAGCTTAATTACCGTCGCTGAACTGAATAATTTCGATGTGAATTAGACGATTAGTTG 779
consensus_7455#1      CTGGAGCTTAATTACCGTCGCTGAACTGAATAATTTCGATGTGAATTAGACGATTAGTTG 375
                      ************************************************************

consensus_7455#0      TTGATTTGTCGCTTTAGAATCGAAGAAGAAATTAAGATCTCTCCATTTTCAATGCAAAAA 839
consensus_7455#1      TTGATTTGTCGCTTTAGAATCGAAGAAGAAATTAAGATCTCTCCATTTTCA-TGCAAAAA 434
                      *************************************************** ********

consensus_7455#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAGCGGC 895
consensus_7455#1      --------------------------------------------------------