These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 705 fasta sequence [TTCTGCTGCTGCTGCGGAGGCGGCGCTGCGGCCGTGGCCGGCCGGTGGTGACGTTGGAGAAGGAGGCGGCTCGCAGACCGGGGGCGGAGGCGACGGCGCAGGGCGGCCCAAGGGGCACCTCTTCAACCGGCCGCCGCCGCTGCAGGGGATCCGCTGGTGATGCACACGGCCTTGCGTGGATGCCCTCCGTGGCGGGCTGGCGGCGTCGCGCGAGACGGACGGGTGCGCCGCGAGGAGGGAGGGGACGAGGCCGATGAGGCGGCGGCGGAGGAGAAGCGGGCCCAGGAGCGCGATGAGGCCTACCAGCGGGCGCTGGACGGCGCCACGCCCGTGTCGCCGGAGTCGCTCGCCGCGATGCTCGACCAGGCGCTGCAGTCCGTGCGCCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGCTGCGACACGGCGGCATGGTTCGCCGGATGCGCACGGGATTCTGACGCCGATCGATTCACCGTCGGGATGAGGCACGAGCGATGCTACGCCAACTAGTTTTGGTTTTGTATGTTACTGCCCCAAATTTTTTCGGTCTTTGGTAGGCTGTGTCAATCTATTGTATTGCGAGAGCTGATTTCATCAGATCTCCTATAGTTGAGTTGGTTGTATGAATTTCATTTGGTTGTAAGCAAATATGCAAGCATTGTTCAGGTTCAATAATTCAAATCTATGTC] [+] EMBL AK062813 [TTCTGCTGCTGCTGCGGAGGCGGCGCTGCGGCCGTGGCCGGCCGGTGGTGACGTTGGAGAAGGAGGCGGCTCGCAGACCGGGGGCGGAGGCGACGGCGCAGGGCGGCCCAAGGGGCACCTCTTCAACCGGCCGCCGCCGCTGCAGGGGATCCGCTGGTGATGCACACGGCCTTGCGTGGATGCCCTCCGTGGCGGGCTGGCGGCGTCGCGCGAGACGGACGGGTGCGCCGCGAGGAGGGAGGGGACGAGGCCGATGAGGCGGCGGCGGAGGAGAAGCGGGCCCAGGAGCGCGATGAGGCCTACCAGCGGGCGCTGGACGGCGCCACGCCCGTGTCGCCGGAGTCGCTCGCCGCGATGCTCGACCAGGCGCTGCAGTCCGTGCGCCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGCTGCGACACGGCGGCATGGTTCGCCGGATGCGCACGGGATTCTGACGCCGATCGATTCACCGTCGGGATGAGGCACGAGCGATGCTACGCCAACTAGTTTTGGTTTTGTATGTTACTGCCCCAAATTTTTTCGGTCTTTGGTAGGCTGTGTCAATCTATTGTATTGCGAGAGCTGATTTCATCAGATCTCCTATAGTTGAGTTGGTTGTATGAATTTCATTTGGTTGTAAGCAAATATGCAAGCATTGTTCAGGTTCAATAATTCAAATCTATGTC] [+] EMBL C96987 [ gatnGCTGCGGAGGCGGCGCTGCGGCCGTNGCCGGCCGGTGGTGACGTTGGAGAAGGAGGCGGCTCGCAGACCGNGGGCGAAAGCGACGGCGCAGGGCGGCCCAAGGGGCACCTCTTCAACCGGCCGCCGCCGCTGCAGGGGATCCGCTGGTGATNCACACGGCCTTNCGTGGA ] [+] EMBL AU097573 [ CGCGCGAGACGGACGGGTGCGCCGCNAGGAGGGAGGGGACGAGGCCGATGAGGCGGCGGCGGAGGAGAAGCGGGCCCAGGAGCGCGATGAGGCCTACCAGCGGGCGCTGGACGGCGCCACGCCCGTGTCGCCGGAGTCGCTCGCCGCGATGCTCGACCAGGCGCTGCAGTCCGTGCGCCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGCTGCGACACGGCGGCATGGTTCGCCGGATGCGCACGGGATTCTGACGCCGATCGATTCACCGTCGGGATGAGGCACGAGCGAT NTACGCCAACTAGTTTTGGTTTTGTATGTTACTGTCCCAAATTTTTTCGGTCTTTGGTAGGCTGTGTCAATCTATTGTATTGCGAGAGCTGATTTCATCAGATCTCCTATAGTTGAGTTGGTTGTATGAATTTCATTTGGTTGTAAGCAAATATGCAAGCATTGTTCAGGTTCAATAAaaaa ] consensusID : consensus_7460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [TCCCCGCCTGGTGCCCATGGCGCTGAAGGCCAAGAACGTGGAGCGCGACGAGCCCTACCATGCGGGCGCTCGACGGCGGCACGCCTGTGTCGCCGGAATCGCTCGCCGCGATGCTCGACCAGGCGCTCCAGTCCGTGCGCCAGCAGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGACGCGAGACGGCGGCGTGGTTCGCCGGATGCACACGGGATTCTGACCCGATCGATCGATCGATCCACCGCCCGGGATGAGGCGCGAGCGATGCGACGCCAACTAGTTTTGGTTTTGAATGTTACTGTCCCAATTTTTTGGGGGTCAGGCTGAGTCAATCTACTATTGTATTGCGAGAGCTCTGATTTCGTCAGATCTACTATATTTGAGTTGGTTGTAGGAATTTCAGTTGGTTGTAAGCAATACGCAAGCCTTGTTCAGGTTCAATAATTCAAATCTAAAAAAAAAA] [+] EMBL BI810883 [TCCCCGCCTGGTGCCCATGGCGCTGAAGGCCAAGAACGTGGAGCGCGACGAGCCCTACCATGCGGGCGCTCGACGGCGGCACGCCTGTGTCGCCGGAATCGCTCGCCGCGATGCTCGACCAGGCGCTCCAGTCCGTGCGCCAGCAGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGACGCGAGACGGCGGCGTGGTTCGCCGGATGCACACGGGATTCTGACCCGATCGATCGATCGATCCACCGCCCGGGATGAGGCGCGAGCGATGCGACGCCAACTAGTTTTGGTTTTGAATGTTACTGTCCCAATTTTTTGGGGGTCAGGCTGAGTCAATCTACTATTGTATTGCGAGAGCTCTGATTTCGTCAGATCTACTATATTTGAGTTGGTTGTAGGAATTTCAGTTGGTTGTAAGCAATACGCAAGCCTTGTTCAGGTTCAATAATTCAAATCTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7460#0 TTCTGCTGCTGCTGCGGAGGCGGCGCTGCGGCCGTGGCCGGCCGGTGGTGACGTTGGAGA 60 consensus_7460#1 ------------------------------------------------------------ consensus_7460#0 AGGAGGCGGCTCGCAGACCGGGGGCGGAGGCGACGGCGCAGGGCGGCCCAAGGGGCACCT 120 consensus_7460#1 ------------------------------------------------------------ consensus_7460#0 CTTCAACCGGCCGCCGCCGCTGCAGGGGATCCGCTGGTGATGCACACGGCCTTGCGTGGA 180 consensus_7460#1 ------------------------------------------------------------ consensus_7460#0 TGCCCTCCGTGGCGGGCTGGCGGCGTCGCGCGAGACGGACGGGTGCGCCGCGAGGAGGGA 240 consensus_7460#1 ------------------------------------------------------------ consensus_7460#0 GGGGACGAGGCCGATGAGGCGGCGGCGGAGGAGAAGCGGGCCCAGGAGCGCGATGAGGCC 300 consensus_7460#1 ---TCCCCGCCTGGTG--CCCATGGCGCTGAAGGCCAAGAACGTGGAGCGCGACGAGCCC 55 * * * * ** * **** * ** * * ********* *** ** consensus_7460#0 TACCA-GCGGGCGCTGGACGGCGCCACGCCCGTGTCGCCGGAGTCGCTCGCCGCGATGCT 359 consensus_7460#1 TACCATGCGGGCGCTCGACGGCGGCACGCCTGTGTCGCCGGAATCGCTCGCCGCGATGCT 115 ***** ********* ******* ****** *********** ***************** consensus_7460#0 CGACCAGGCGCTGCAGTCCGTGCGCCAGCCGCCGCCGCCGCCGCAGCAGCAGCAGAACTG 419 consensus_7460#1 CGACCAGGCGCTCCAGTCCGTGCGCCAGCAGCCGCCGC------AGCAGCAGCAGAACTG 169 ************ **************** ******** **************** consensus_7460#0 CCAGAACACGCTGCGACACGGCGGCATGGTTCGCCGGATGCGCACGGGATTCTGACGC-- 477 consensus_7460#1 CCAGAACACGACGCGAGACGGCGGCGTGGTTCGCCGGATGCACACGGGATTCTGACCCGA 229 ********** **** ******** *************** ************** * consensus_7460#0 -----CGATCGATTCACCGTC-GGGATGAGGCACGAGCGATGCTACGCCAACTAGTTTTG 531 consensus_7460#1 TCGATCGATCGATCCACCGCCCGGGATGAGGCGCGAGCGATGCGACGCCAACTAGTTTTG 289 ******** ***** * ********** ********** **************** consensus_7460#0 GTTTTGTATGTTACTGCCCCAAATTTTTTCGGTCTTTGGTAGGCTGTGTCAATCTA---T 588 consensus_7460#1 GTTTTGAATGTTACTGTCCCAATTTTTTGGGG-----GTCAGGCTGAGTCAATCTACTAT 344 ****** ********* ***** ***** ** * ****** ********* * consensus_7460#0 TGTATTGCGAGAGCT--GATTTCATCAGATCTCCTATAGTTGAGTTGGTTGTATGAATTT 646 consensus_7460#1 TGTATTGCGAGAGCTCTGATTTCGTCAGATCTACTATATTTGAGTTGGTTGTAGGAATTT 404 *************** ****** ******** ***** ************** ****** consensus_7460#0 CATTTGGTTGTAAGCAAATATGCAAGCATTGTTCAGGTTCAATAATTCAAATCTATGTC- 705 consensus_7460#1 CAGTTGGTTGTAAGCAA-TACGCAAGCCTTGTTCAGGTTCAATAATTCAAATCTAAAAAA 463 ** ************** ** ****** *************************** consensus_7460#0 ---- consensus_7460#1 AAAA 467 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||