cluster # 7462

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Oryza sativa
cluster # 7462 cluster # 7462 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7462#0 length = 688 sequences # 3

consensus_7462#1 length = 185 sequences # 1

consensusID : consensus_7462#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 688
fasta sequence

                              [CTGTCAACGATACGCTACGTAACGGCATGACTGTGTTTTTTTTTTTTTTTTTCTTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTT-GGCGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGTTGCTCCTGAAGACGGAAGGTGTCCACAATGTCGACCACCTTCACAGCTTGGTCATCAACACCCTCATCATCACCACCACCCTCAGCAGATGGGTTGGCACCAATGTCCACATCAATAGCTCCTTGAACGACCCACTTGCCATCGACTTCCCAGAGGATGCCGTTCTCGATCTCTCTGTAGGGGAACGAATCCGACAGGAACTCGTC]

[+] EMBL CF320702             [CTGTCAACGATACGCTACGTAACGGCATGACTGTGTTTTTTTTTTTTTTTTTCTTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTT GGCGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGTTGCTCCTGAAGACGGAAGGTGTCCACAATGTCGACCACCTTCACAGCTTGGTCATCAACACCCTCATCATCACCACCACCCTCAGCAGATGGGTTGGCACCAATGTCCACATCAATAGCTCCTTGAACGACCCACTTGCC                                                                  ]
[+] EMBL CF319318             [                      CGGCATGACAGTGTTTTTTTTTTT       TTTTTTAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTAGACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAGAGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGCCATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGTACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGGGCGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAGGTTGCTCCTGAAGACGGAAGGTGTCCACAATGTCGACCACCTTCACAGCTTGGTCATCAACACCCTCATCATCACCACCACCCTCAGCAGATGGGTTGGCACCAATGTCCACATCAATAGCTCCTTGAACGACCCACTTGCCATCGACTTCCCAGAGGATGCCGTTCTCGATCTCTCTGTAGGGGAACGAATCCGACAGGAACTCGTC]
[+] EMBL CF319513             [                                    TTTTTTTTTTTTTTTTTTTTTTTAAAAGGACTCATTTTAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_7462#0
CTGTCAACGATACGCTACGTAACGGCATGACTGTGTTTTTTTTTTTTTTTTTCTTTTTTA
AAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTA
GACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGA
TAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAG
AGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGC
CATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGT
ACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGG
CGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAG
GTTGCTCCTGAAGACGGAAGGTGTCCACAATGTCGACCACCTTCACAGCTTGGTCATCAA
CACCCTCATCATCACCACCACCCTCAGCAGATGGGTTGGCACCAATGTCCACATCAATAG
CTCCTTGAACGACCCACTTGCCATCGACTTCCCAGAGGATGCCGTTCTCGATCTCTCTGT
AGGGGAACGAATCCGACAGGAACTCGTC

consensusID : consensus_7462#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 185
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGCTTCCGACACCAACATTAGACCATATCGAGTCAGCTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAGCATCAGTGTCGAGCAGAAGGAACCGAT]

[-] EMBL CF318121             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGCTTCCGACACCAACATTAGACCATATCGAGTCAGCTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGATAAAGCATCAGTGTCGAGCAGAAGGAACCGAT]




>consensus_7462#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAGGACTCATCTCAACATCCATAACA
AGCAAACGATAGTTGCTTCCGACACCAACATTAGACCATATCGAGTCAGCTGACAACCAT
AGACTAGACCAAAAATACGGCGGACTGCATAGATAAAGCATCAGTGTCGAGCAGAAGGAA
CCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7462#0      CTGTCAACGATACGCTACGTAACGGCATGACTGTGTTTTTTTTTTTTTTTTTCTTTTTTA 60
consensus_7462#1      ---------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 33
                                                 *   * * ***************** ****  *

consensus_7462#0      AAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGTTTCCGACACCAACATTA 120
consensus_7462#1      AAAGGACTCATCTCAACATCCATAACAAGCAAACGATAGTTGCTTCCGACACCAACATTA 93
                      ****************************************** *****************

consensus_7462#0      GACCATATCGAGTCAACTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGA 180
consensus_7462#1      GACCATATCGAGTCAGCTGACAACCATAGACTAGACCAAAAATACGGCGGACTGCATAGA 153
                      *************** ********************************************

consensus_7462#0      TAAAACATCAGTGTCGAGCAGAAGGAACCGCTCAGCACTTGACCTCCTTCAGCCCATGAG 240
consensus_7462#1      TAAAGCATCAGTGTCGAGCAGAAGGAACCGAT---------------------------- 185
                      **** ************************* *                            

consensus_7462#0      AGAAGTAAAGGAAGGTTGGGTCGGTGGCTCCGTCCTTGTAGTAGGCAAACACCAAGCCGC 300
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      CATCATCATGCATGCTCTCACCAACAAAGAACTGAAGGTCCTTGAGCTTTCCAAGCAAGT 360
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      ACTTGGTGGCACCCTCAATGTTCTTCTTGAATTCCTCTTGCTTTTCCGCATCCAGCTTGG 420
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      CGGAGAGGTTCTTGATGTAGCGCTTCATGAAGGTCACAAACTGCTTCTTGTCAAAAGGAG 480
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      GTTGCTCCTGAAGACGGAAGGTGTCCACAATGTCGACCACCTTCACAGCTTGGTCATCAA 540
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      CACCCTCATCATCACCACCACCCTCAGCAGATGGGTTGGCACCAATGTCCACATCAATAG 600
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      CTCCTTGAACGACCCACTTGCCATCGACTTCCCAGAGGATGCCGTTCTCGATCTCTCTGT 660
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      AGGGGAACGAATCCGACAGGAACTCGTC 688
consensus_7462#1      ----------------------------