These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1459 fasta sequence [CTCAAACCATCCCAATGAACAGAGTTTCAAAAGAGAAAGAAGTATAGCCCTTCAGGCTGTCACAGCACTTGTGTCTAAGAGCTCCACCTCCATCACACCATGACTGCAAGGTTGGCACTGCTCGCCAGCCTTCTTCTCCTGCTCCAACTGGTGCCGCCATCCTCTGCCGTGGTGTTGGAGCTCCACGGTAACGTCTACCCTATTGGCCATTTCTTCATCACCATGAACATCGGCGACCCGGCAAAATCCTACTTCCTGGACATCGACACCGGCAGCACCCTCACCTGGCTGCAGTGCGACGCCCCCTGCACGAATTGCAACATTGTACCACACGTGCTGTACAAGCCAACCCCAAAGAAGCTGGTGACCTGTGCCGACTCACTCTGCACTGACCTGTACACTGATCTGGGCAAGCCCAAGAGATGTGGATCCCAGAAGCAATGTGACTATGTGATTCAGTACGTCGACAGTTCATCCATGGGCGTGCTCGTCATCGACAGGTTCTCCCTCTCAGCAAGCAACGGCACCAATCCTACTACCATAGCCTTCGGCTGTGGGTACGACCAGGGGAAGAAGAATCGCAATGTGCCCATACCGGTAGACAGCATCCTCGGGCTCAGTAGAGGCAAGGTTACGCTGCTCTCGCAGCTCAAGTCCCAGGGGGTGATCACCAAACATGTCTTGGGCCATTGCATCAGCTCAAAAGGTGGGGGTTTCCTCTTCTTTGGGGATGCCCAGGTGCCAACTTCAGGTGTAACCTGGACCCCCATGAACAGAGAACATAAGTACTACTCTCCTGGGCATGGAACCTTGCACTTCGATTCAAATAGCAAGGCGATAAGCGCGGCACCAATGGCAGTGATATTTGACAGTGGTGCCACATACACCTACTTTGCTGCGCAGCCATACCAAGCGACTCTCTCAGTGGTGAAATCCACTCTCAACAGCGAATGTAAGTTTCTTACCGAGGTGACAGAAAAAGATCGGGCTCTTACTGTATGCTGGAAAGGGAAGGATAAAATCGTAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTGTCTCTGGAATTCGCCGATGGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAGGGCCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCTGTCGTTAGCTGGAACAAACTTAATTGGAGGAATTACAATGCTGGATCAGATGGTCATATATGACAGCGAGAGATCGCTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGTTCTGAGTCTGCGATCACTTCGCGTCTCTGAATGAACTGAAAACCAGAATACAGGGAGGATAGATGGAAACAGAAAGGGACATTCATATCTTAGAAAAGAAATGAATGATAAAGCATGTATGCTTCTGCCCATAAATAATGAAATGAAGTATANTTTA] [+] EMBL AK110811 [CTCAAACCATCCCAATGAACAGAGTTTCAAAAGAGAAAGAAGTATAGCCCTTCAGGCTGTCACAGCACTTGTGTCTAAGAGCTCCACCTCCATCACACCATGACTGCAAGGTTGGCACTGCTCGCCAGCCTTCTTCTCCTGCTCCAACTGGTGCCGCCATCCTCTGCCGTGGTGTTGGAGCTCCACGGTAACGTCTACCCTATTGGCCATTTCTTCATCACCATGAACATCGGCGACCCGGCAAAATCCTACTTCCTGGACATCGACACCGGCAGCACCCTCACCTGGCTGCAGTGCGACGCCCCCTGCACGAATTGCAACATTGTACCACACGTGCTGTACAAGCCAACCCCAAAGAAGCTGGTGACCTGTGCCGACTCACTCTGCACTGACCTGTACACTGATCTGGGCAAGCCCAAGAGATGTGGATCCCAGAAGCAATGTGACTATGTGATTCAGTACGTCGACAGTTCATCCATGGGCGTGCTCGTCATCGACAGGTTCTCCCTCTCAGCAAGCAACGGCACCAATCCTACTACCATAGCCTTCGGCTGTGGGTACGACCAGGGGAAGAAGAATCGCAATGTGCCCATACCGGTAGACAGCATCCTCGGGCTCAGTAGAGGCAAGGTTACGCTGCTCTCGCAGCTCAAGTCCCAGGGGGTGATCACCAAACATGTCTTGGGCCATTGCATCAGCTCAAAAGGTGGGGGTTTCCTCTTCTTTGGGGATGCCCAGGTGCCAACTTCAGGTGTAACCTGGACCCCCATGAACAGAGAACATAAGTACTACTCTCCTGGGCATGGAACCTTGCACTTCGATTCAAATAGCAAGGCGATAAGCGCGGCACCAATGGCAGTGATATTTGACAGTGGTGCCACATACACCTACTTTGCTGCGCAGCCATACCAAGCGACTCTCTCAGTGGTGAAATCCACTCTCAACAGCGAATGTAAGTTTCTTACCGAGGTGACAGAAAAAGATCGGGCTCTTACTGTATGCTGGAAAGGGAAGGATAAAATCGTAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTGTCTCTGGAATTCGCCGATGGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAGGGCCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCTGTCGTTAGCTGGAACAAACTTAATTGGAGGAATTACAATGCTGGATCAGATGGTCATATATGACAGCGAGAGATCGCTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGTTCTGAGTCTGCGATCACTTCGCGTCTCTGAATGAACTGAAAACCAGAATACAGGGAGGATAGATGGAAACAGAAAGGGACATTCATATCTTAGAAAAGAAATGAATGATAAGGCATGTATGCTTCTGCCCATAAATAATGAAATGAAGTA ] [+] EMBL AF308692 [ GGCTGTCACAGCACTTGTGTCTAAGAGCTCCACCTCCATCACACCATGACTGCAAGGTTGGCACTGCTCGCCAGCCTTCTTCTCCTGCTCCAACTGGTGCCGCCATCCTCTGCCGTGGTGTTGGAGCTCCACGGTAACGTCTACCCTATTGGCCATTTCTTCATCACCATGAACATCGGCGACCCGGCAAAATCCTACTTCCTGGACATCGACACCGGCAGCACCCTCACCTGGCTGCAGTGCGACGCCCCCTGCACGAATTGCAACATTGTACCACACGTGCTGTACAAGCCAACCCCAAAGAAGCTGGTGACCTGTGCCGACTCACTCTGCACTGACCTGTACACTGATCTGGGCAAGCCCAAGAGATGTGGATCCCAGAAGCAATGTGACTATGTGATTCAGTACGTCGACAGTTCATCCATGGGCGTGCTCGTCATCGACAGGTTCTCCCTCTCAGCAAGCAACGGCACCAATCCTACTACCATAGCCTTCGGCTGTGGGTACGACCAGGGGAAGAAGAATCGCAATGTGCCCATACCGGTAGACAGCATCCTCGGGCTCAGTAGAGGCAAGGTTACGCTGCTCTCGCAGCTCAAGTCCCAGGGGGTGATCACCAAACATGTCTTGGGCCATTGCATCAGCTCAAAAGGTGGGGGTTTCCTCTTCTTTGGGGATGCCCAGGTGCCAACTTCAGGTGTAACCTGGACCCCCATGAACAGAGAACATAAGTACTACTCTCCTGGGCATGGAACCTTGCACTTCGATTCAAATAGCAAGGCGATAAGCGCGGCACCAATGGCAGTGATATTTGACAGTGGTGCCACATACACCTACTTTGCTGCGCAGCCATACCAAGCGACTCTCTCAGTGGTGAAATCCACTCTCAACAGCGAATGTAAGTTTCTTACCGAGGTGACAGAAAAAGATCGGGCTCTTACTGTATGCTGGAAAGGGAAGGATAAAATCGTAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTGTCTCTGGAATTCGCCGATGGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAGGGCCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCTGTCGTTAGCTGGAACAAACTTAATTGGAGGAATTACAATGCTGGATCAGATGGTCATATATGACAGCGAGAGATCGCTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGTTCTGAGTCTGCGATCACTTCGCGTCTCTGAATGAACTGAAAACCAGAATACAGGGAGGATAGATGGAAACAGAAAGGGACATTCATATCTTAGAAAAGAAATGAATGATAAAGCATGTATGCTTCTGCCCATAAATAATGAAATGAAGTA ] [+] EMBL CA765431 [ CAAGCATGTCTTGGGCCATTGCATCAGCTCAAAAGGAAAGGGTTTCCTCTCCTTTGGGGATGCCAAGGTGCCAACTTCAGGTGTAACCTGGTCCCCCATGAACAGAGAGCATAAGCACTATTCACCCAGGCAAGGAACCTTGCATTTCAATTCAAATAGCAAGCCGATAAGCGCAGCACCAATGGAAGTCATATTTGATAGTGGTGCCACGTACACCTACTTTGCTCTGCAGCCATACCACGCGACTCTCTCAGTAGTGAAATCCACTCTCAGCAAGGAATGTAAGTTTCTTACTGAGGTAAAAGAAAAAGATCGGGCTCTTACTGTATGCTGGAAAGGTAAGGATAAAATCAGAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTGTCTCTGAAATTTGCCGATGGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAGGGCCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCCGTCGTTAGCTGGAACAAACTTAATTGGAGGAATTACAATGCTGGATCAGATGGTCATATATGACAGCGAGAGATCGCTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGTTCTGCGTCTGCGATCACTTCGCGTCTCTGAATAAACTGTAAACCAGAATACAGGGAGGATAGATGGAAACAGAAAGGG CATTCATATCTTAGAAAAGAACTGAATGATAAAGCATGTATGCTTCTGNCCAT AAT ATGGAATGAAGTATANTTTA] consensusID : consensus_7463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [CGAGCGGCAAAACCCTACTTCCTGGACATCGACACCGGCAGCACCCTCDCCTGGCTGCAGTGCGACTACCCCTGCATTAATTGCAACAAGGTACCACACGGGTTGTACAAGCCAGAACTAAAATATGCGGTGAAATGCACCGAACAACGGTGTGCCGACCTGTACGCTGATCTGAGAAAGCCGATGAAATGCGGGCCCAAGAACCAATGTCACTATGGGATTCAGTATGTTGGTGGGTCANBCATTGGCGTGCTCATCGTCGACAGCTTCTCCCTCCCAGCAAGCAATGGCACCAATCCTACCAGCATCGCATTTGGCTGTGGGTACAHTCAGGGGAAGAACAATCACAATGTGCCCACACCGGTAAACGGCATCCTCGGGCTCGGTAGAGGAAAGGTTACGCTGCTCTCACAGCTCAAGTCCCAGGGGGTGATCACCAAGCATGTCTTGGGCCMTTGCATCA] [+] EMBL AA754302 [CGAGCGGCAAAACCCTACTTCCTGGACATCGACACCGGCAGCACCCTCDCCTGGCTGCAGTGCGACTACCCCTGCATTAATTGCAACAAGGTACCACACGGGTTGTACAAGCCAGAACTAAAATATGCGGTGAAATGCACCGAACAACGGTGTGCCGACCTGTACGCTGATCTGAGAAAGCCGATGAAATGCGGGCCCAAGAACCAATGTCACTATGGGATTCAGTATGTTGGTGGGTCANBCATTGGCGTGCTCATCGTCGACAGCTTCTCCCTCCCAGCAAGCAATGGCACCAATCCTACCAGCATCGCATTTGGCTGTGGGTACAHTCAGGGGAAGAACAATCACAATGTGCCCACACCGGTAAACGGCATCCTCGGGCTCGGTAGAGGAAAGGTTACGCTGCTCTCACAGCTCAAGTCCCAGGGGGTGATCACCAAGCATGTCTTGGGCCMTTGCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7463#0 CTCAAACCATCCCAATGAACAGAGTTTCAAAAGAGAAAGAAGTATAGCCCTTCAGGCTGT 60 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 CACAGCACTTGTGTCTAAGAGCTCCACCTCCATCACACCATGACTGCAAGGTTGGCACTG 120 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 CTCGCCAGCCTTCTTCTCCTGCTCCAACTGGTGCCGCCATCCTCTGCCGTGGTGTTGGAG 180 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 CTCCACGGTAACGTCTACCCTATTGGCCATTTCTTCATCACCATGAACATCGGCGACCCG 240 consensus_7463#1 -----------------------------------------------------CGAGC-G 6 *** * * consensus_7463#0 GCAAAATCCTACTTCCTGGACATCGACACCGGCAGCACCCTCACCTGGCTGCAGTGCGAC 300 consensus_7463#1 GCAAAACCCTACTTCCTGGACATCGACACCGGCAGCACCCTCDCCTGGCTGCAGTGCGAC 66 ****** *********************************** ***************** consensus_7463#0 GCCCCCTGCACGAATTGCAACATTGTACCACACGTGCTGTACAAGCCAACCCCAAAGAAG 360 consensus_7463#1 TACCCCTGCATTAATTGCAACAAGGTACCACACGGGTTGTACAAGCCAGAACTAAAATAT 126 ******** ********** ********** * *********** * *** * consensus_7463#0 CTGGTGACCTGTGCCGACTCACTCTGCACTGACCTGTACACTGATCTGGGCAAGCCCAAG 420 consensus_7463#1 GCGGTGAAATGCACCGAACAACGGTGTGCCGACCTGTACGCTGATCTGAGAAAGCCGATG 186 ***** ** **** ** ** * ********* ******** * ***** * * consensus_7463#0 AGATGTGGATCCCAGAAGCAATGTGACTATGTGATTCAGTACGTCGACAGTTCATCCATG 480 consensus_7463#1 AAATGCGGGCCCAAGAACCAATGTCACTATGGGATTCAGTATGTTGGTGGGTCANBCATT 246 * *** ** ** **** ****** ****** ********* ** * * *** *** consensus_7463#0 GGCGTGCTCGTCATCGACAGGTTCTCCCTCTCAGCAAGCAACGGCACCAATCCTACTACC 540 consensus_7463#1 GGCGTGCTCATCGTCGACAGCTTCTCCCTCCCAGCAAGCAATGGCACCAATCCTACCAGC 306 ********* ** ******* ********* ********** ************** * * consensus_7463#0 ATAGCCTTCGGCTGTGGGTACGACCAGGGGAAGAAGAATCGCAATGTGCCCATACCGGTA 600 consensus_7463#1 ATCGCATTTGGCTGTGGGTACAHTCAGGGGAAGAACAATCACAATGTGCCCACACCGGTA 366 ** ** ** ************ *********** **** *********** ******* consensus_7463#0 GACAGCATCCTCGGGCTCAGTAGAGGCAAGGTTACGCTGCTCTCGCAGCTCAAGTCCCAG 660 consensus_7463#1 AACGGCATCCTCGGGCTCGGTAGAGGAAAGGTTACGCTGCTCTCACAGCTCAAGTCCCAG 426 ** ************** ******* ***************** *************** consensus_7463#0 GGGGTGATCACCAAACATGTCTTGGGCCATTGCATCAGCTCAAAAGGTGGGGGTTTCCTC 720 consensus_7463#1 GGGGTGATCACCAAGCATGTCTTGGGCCMTTGCATCA----------------------- 463 ************** ************* ******** consensus_7463#0 TTCTTTGGGGATGCCCAGGTGCCAACTTCAGGTGTAACCTGGACCCCCATGAACAGAGAA 780 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 CATAAGTACTACTCTCCTGGGCATGGAACCTTGCACTTCGATTCAAATAGCAAGGCGATA 840 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 AGCGCGGCACCAATGGCAGTGATATTTGACAGTGGTGCCACATACACCTACTTTGCTGCG 900 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 CAGCCATACCAAGCGACTCTCTCAGTGGTGAAATCCACTCTCAACAGCGAATGTAAGTTT 960 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 CTTACCGAGGTGACAGAAAAAGATCGGGCTCTTACTGTATGCTGGAAAGGGAAGGATAAA 1020 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 ATCGTAACTATCGATGAAGTCAAGAAGTGCTTCAGATCACTGTCTCTGGAATTCGCCGAT 1080 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 GGCGATAAGAAGGCCACTTTGGAGATCCCACCTGAGCACTACCTCATTATCTCTCAAGAG 1140 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 GGCCATGTGTGCTTGGGCATCCTTGATGGATCGAAGGAGCATCTGTCGTTAGCTGGAACA 1200 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 AACTTAATTGGAGGAATTACAATGCTGGATCAGATGGTCATATATGACAGCGAGAGATCG 1260 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 CTGCTCGGATGGGTCAATTATCAGTGCGATAGAATTCCCCGTTCTGAGTCTGCGATCACT 1320 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 TCGCGTCTCTGAATGAACTGAAAACCAGAATACAGGGAGGATAGATGGAAACAGAAAGGG 1380 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 ACATTCATATCTTAGAAAAGAAATGAATGATAAAGCATGTATGCTTCTGCCCATAAATAA 1440 consensus_7463#1 ------------------------------------------------------------ consensus_7463#0 TGAAATGAAGTATANTTTA 1459 consensus_7463#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||