Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7467 cluster # 7467       Sequences # 4       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7467#0 length = 2207 sequences # 1  
 consensus_7467#1 length = 1051 sequences # 1  
consensus_7467#2 length = 564 sequences # 2  
consensusID : consensus_7467#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2207
fasta sequence 
                              [TCAGCCTCTGTTCTTCCACTCATTATTATCATTTGCAGCTCCGAAATGGATCAGTTCAGTATGAACTGATTAGACCAATCAAGTACAGACCAAGGAGCATCATCAGGTGCTGTAGCACTACAAGGGGAAAAGCCAGGGAGGACTACTACTAAGTGCTGGGAGTGACGGTTAATTCAACGCCTTAGGAGATCAAGGAGGCTTACAGGAAGCTTCAGAAACGACACCATCCTGATATTGCTGGCTACAAGGGTCATGACTACACCCTACTGCTGAATGAGGCATACAAGGTGTTGATGAGAAATAGTCCCAGGAACGCTGGTGCTAGTGGCAGAGGCTTTGGCAGAGGTTTCACTGGAAACGGGTACAGTTGTTGGAATGGGCCTGTGAGAAGCCATGCACTCTTTGTCGACGAGAACAAATGCATAGGATGTAGGGAGTGCGTCCACCATGCCGGAGAGACATTCGCGATGGACGATGTTCTTGGAAGCGCTCACGTCGAAGTCCAGTTTGGAGACCAGGAGTAGAAGATACAGGTAGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCTAGCGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGGCGGCGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACAACTTCACCAAGAGGCTCCAGAGAGAGGAGCAACAGGACATGGCACGGCAGCAACGCTACAATAATGGTAAAAAGAAATAACTGAAACCAAACGAACAGCTTCTAGCAGCTGTGAACCAGAAAAATAACGAAGAAGTCCAAATTACCCTCTTAACCACAAAACCAGACATCCTTCACCCTTAGACTCGCTTTAGAGCAGTTTCAGTCTAGTTGATACACACGTGATAGTCTAGTTAGCATAAAAGAATTAAGAAAAGCGATTTGATCCACACATCAGTTTGACCTTCTTAAGTTTTTTTTAAAAAAATGTTCAAACCCACAAATCAAATCTGACATGTGAGTCTCACCGTTTTTATTCTTTTTATGCTAACCAGACTACCACGTGTGTCACATGATTTTTTTTAGAGAAGAGTATTTTTTACCCAGTCTCTACATCCAACTGGATATATGCGGTCATTTAAATTAGGAACTTAGCCCCACAAACAACCCAATCTGAAATTCGCTTCGATGGAGATTTGAACTTAAAAACCTTGGGGTACTACTCAGGTCACATGATAGTACCAAAATCGCTCCAAAACAAGTCAAGGAGATAATTTGTCCAATATAAAAATTTAGGGTGAAGAATGTCTGATTTCGTGGTTTAGAGGGGCAATTCGTACCGTCGCTCTAATTTAAAGTTGTACTTTTTTCCAAAAATAATGAAAAGGGAAAGAAAATTGATTTATTAAAGGGTTATTAGAATGTCAGGAAGTCAAGCGAGACAATATTTTGAATGCCATTTTATCGAAGCTAACTTTCGGAGTGCCAAAATGTGGAAACCACATTTTAGAGTGTTAATAGAGCAATTTTCTCAGAATTTATATATGATTTTCACATTAATTAGTTCGATCCTATAAACCATTTTTAATTTTTTTTTTCTATATTCAAAAAGATGTAACGAAAAAAATATTCCCTCCATTTTATATTATAAGTCGCTTTGAATTTTAACCTAGCCAAACTTATTTAAGTTTAATCAAATTTATAGAAAAATTTAGCAACATCTACATAGAAAATTAGTTTCATCAAATTGAGCATTAAATATATTTGAGTAAATTGCATTTAGGGCCACCTTTTATCACCAAAGTTCCACTTTGGACTACCCTTTAAACCATTTTTTCACTTTGGACTAGATTAGTTTGCCTCTGTTTCACTTTGAACCACCCCAAAAACTTTTCTCGAGCACATAAATGACTTTAACCACATCGGCACCCATAAACCAATAATCTTTCCGACTTATATATAGACTATTCTTCGTAAGATTAGAGGGTAGATGTAGCTAGAAAAGTGACTTGGGGTGGTCCAAACTGTAACAAAGGTAATCTTACCTAGTCTAAAGTGAAAATATTAGCTAGAGGGTGGTTCAAAGTGAAACTTTGGTAATAAAATGTGGACCAAAGTGCAATTAACTCTATAATATATTTTAATAGTATATTTATTTGGTGTTAGAAACATTTTTATGTTCTTTTTTTTTTGTAAAAT]

[+] EMBL AK111525             [TCAGCCTCTGTTCTTCCACTCATTATTATCATTTGCAGCTCCGAAATGGATCAGTTCAGTATGAACTGATTAGACCAATCAAGTACAGACCAAGGAGCATCATCAGGTGCTGTAGCACTACAAGGGGAAAAGCCAGGGAGGACTACTACTAAGTGCTGGGAGTGACGGTTAATTCAACGCCTTAGGAGATCAAGGAGGCTTACAGGAAGCTTCAGAAACGACACCATCCTGATATTGCTGGCTACAAGGGTCATGACTACACCCTACTGCTGAATGAGGCATACAAGGTGTTGATGAGAAATAGTCCCAGGAACGCTGGTGCTAGTGGCAGAGGCTTTGGCAGAGGTTTCACTGGAAACGGGTACAGTTGTTGGAATGGGCCTGTGAGAAGCCATGCACTCTTTGTCGACGAGAACAAATGCATAGGATGTAGGGAGTGCGTCCACCATGCCGGAGAGACATTCGCGATGGACGATGTTCTTGGAAGCGCTCACGTCGAAGTCCAGTTTGGAGACCAGGAGTAGAAGATACAGGTAGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCTAGCGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGGCGGCGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACAACTTCACCAAGAGGCTCCAGAGAGAGGAGCAACAGGACATGGCACGGCAGCAACGCTACAATAATGGTAAAAAGAAATAACTGAAACCAAACGAACAGCTTCTAGCAGCTGTGAACCAGAAAAATAACGAAGAAGTCCAAATTACCCTCTTAACCACAAAACCAGACATCCTTCACCCTTAGACTCGCTTTAGAGCAGTTTCAGTCTAGTTGATACACACGTGATAGTCTAGTTAGCATAAAAGAATTAAGAAAAGCGATTTGATCCACACATCAGTTTGACCTTCTTAAGTTTTTTTTAAAAAAATGTTCAAACCCACAAATCAAATCTGACATGTGAGTCTCACCGTTTTTATTCTTTTTATGCTAACCAGACTACCACGTGTGTCACATGATTTTTTTTAGAGAAGAGTATTTTTTACCCAGTCTCTACATCCAACTGGATATATGCGGTCATTTAAATTAGGAACTTAGCCCCACAAACAACCCAATCTGAAATTCGCTTCGATGGAGATTTGAACTTAAAAACCTTGGGGTACTACTCAGGTCACATGATAGTACCAAAATCGCTCCAAAACAAGTCAAGGAGATAATTTGTCCAATATAAAAATTTAGGGTGAAGAATGTCTGATTTCGTGGTTTAGAGGGGCAATTCGTACCGTCGCTCTAATTTAAAGTTGTACTTTTTTCCAAAAATAATGAAAAGGGAAAGAAAATTGATTTATTAAAGGGTTATTAGAATGTCAGGAAGTCAAGCGAGACAATATTTTGAATGCCATTTTATCGAAGCTAACTTTCGGAGTGCCAAAATGTGGAAACCACATTTTAGAGTGTTAATAGAGCAATTTTCTCAGAATTTATATATGATTTTCACATTAATTAGTTCGATCCTATAAACCATTTTTAATTTTTTTTTTCTATATTCAAAAAGATGTAACGAAAAAAATATTCCCTCCATTTTATATTATAAGTCGCTTTGAATTTTAACCTAGCCAAACTTATTTAAGTTTAATCAAATTTATAGAAAAATTTAGCAACATCTACATAGAAAATTAGTTTCATCAAATTGAGCATTAAATATATTTGAGTAAATTGCATTTAGGGCCACCTTTTATCACCAAAGTTCCACTTTGGACTACCCTTTAAACCATTTTTTCACTTTGGACTAGATTAGTTTGCCTCTGTTTCACTTTGAACCACCCCAAAAACTTTTCTCGAGCACATAAATGACTTTAACCACATCGGCACCCATAAACCAATAATCTTTCCGACTTATATATAGACTATTCTTCGTAAGATTAGAGGGTAGATGTAGCTAGAAAAGTGACTTGGGGTGGTCCAAACTGTAACAAAGGTAATCTTACCTAGTCTAAAGTGAAAATATTAGCTAGAGGGTGGTTCAAAGTGAAACTTTGGTAATAAAATGTGGACCAAAGTGCAATTAACTCTATAATATATTTTAATAGTATATTTATTTGGTGTTAGAAACATTTTTATGTTCTTTTTTTTTTGTAAAAT]




>consensus_7467#0
TCAGCCTCTGTTCTTCCACTCATTATTATCATTTGCAGCTCCGAAATGGATCAGTTCAGT
ATGAACTGATTAGACCAATCAAGTACAGACCAAGGAGCATCATCAGGTGCTGTAGCACTA
CAAGGGGAAAAGCCAGGGAGGACTACTACTAAGTGCTGGGAGTGACGGTTAATTCAACGC
CTTAGGAGATCAAGGAGGCTTACAGGAAGCTTCAGAAACGACACCATCCTGATATTGCTG
GCTACAAGGGTCATGACTACACCCTACTGCTGAATGAGGCATACAAGGTGTTGATGAGAA
ATAGTCCCAGGAACGCTGGTGCTAGTGGCAGAGGCTTTGGCAGAGGTTTCACTGGAAACG
GGTACAGTTGTTGGAATGGGCCTGTGAGAAGCCATGCACTCTTTGTCGACGAGAACAAAT
GCATAGGATGTAGGGAGTGCGTCCACCATGCCGGAGAGACATTCGCGATGGACGATGTTC
TTGGAAGCGCTCACGTCGAAGTCCAGTTTGGAGACCAGGAGTAGAAGATACAGGTAGCTG
TGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCTAGCGGTGCTGG
AGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGGCGGCGGGTGGGAGA
GGCCCCGGGACGTGTTCGCTGCGGCCAACAACTTCACCAAGAGGCTCCAGAGAGAGGAGC
AACAGGACATGGCACGGCAGCAACGCTACAATAATGGTAAAAAGAAATAACTGAAACCAA
ACGAACAGCTTCTAGCAGCTGTGAACCAGAAAAATAACGAAGAAGTCCAAATTACCCTCT
TAACCACAAAACCAGACATCCTTCACCCTTAGACTCGCTTTAGAGCAGTTTCAGTCTAGT
TGATACACACGTGATAGTCTAGTTAGCATAAAAGAATTAAGAAAAGCGATTTGATCCACA
CATCAGTTTGACCTTCTTAAGTTTTTTTTAAAAAAATGTTCAAACCCACAAATCAAATCT
GACATGTGAGTCTCACCGTTTTTATTCTTTTTATGCTAACCAGACTACCACGTGTGTCAC
ATGATTTTTTTTAGAGAAGAGTATTTTTTACCCAGTCTCTACATCCAACTGGATATATGC
GGTCATTTAAATTAGGAACTTAGCCCCACAAACAACCCAATCTGAAATTCGCTTCGATGG
AGATTTGAACTTAAAAACCTTGGGGTACTACTCAGGTCACATGATAGTACCAAAATCGCT
CCAAAACAAGTCAAGGAGATAATTTGTCCAATATAAAAATTTAGGGTGAAGAATGTCTGA
TTTCGTGGTTTAGAGGGGCAATTCGTACCGTCGCTCTAATTTAAAGTTGTACTTTTTTCC
AAAAATAATGAAAAGGGAAAGAAAATTGATTTATTAAAGGGTTATTAGAATGTCAGGAAG
TCAAGCGAGACAATATTTTGAATGCCATTTTATCGAAGCTAACTTTCGGAGTGCCAAAAT
GTGGAAACCACATTTTAGAGTGTTAATAGAGCAATTTTCTCAGAATTTATATATGATTTT
CACATTAATTAGTTCGATCCTATAAACCATTTTTAATTTTTTTTTTCTATATTCAAAAAG
ATGTAACGAAAAAAATATTCCCTCCATTTTATATTATAAGTCGCTTTGAATTTTAACCTA
GCCAAACTTATTTAAGTTTAATCAAATTTATAGAAAAATTTAGCAACATCTACATAGAAA
ATTAGTTTCATCAAATTGAGCATTAAATATATTTGAGTAAATTGCATTTAGGGCCACCTT
TTATCACCAAAGTTCCACTTTGGACTACCCTTTAAACCATTTTTTCACTTTGGACTAGAT
TAGTTTGCCTCTGTTTCACTTTGAACCACCCCAAAAACTTTTCTCGAGCACATAAATGAC
TTTAACCACATCGGCACCCATAAACCAATAATCTTTCCGACTTATATATAGACTATTCTT
CGTAAGATTAGAGGGTAGATGTAGCTAGAAAAGTGACTTGGGGTGGTCCAAACTGTAACA
AAGGTAATCTTACCTAGTCTAAAGTGAAAATATTAGCTAGAGGGTGGTTCAAAGTGAAAC
TTTGGTAATAAAATGTGGACCAAAGTGCAATTAACTCTATAATATATTTTAATAGTATAT
TTATTTGGTGTTAGAAACATTTTTATGTTCTTTTTTTTTTGTAAAAT

consensusID : consensus_7467#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1051
fasta sequence 
                              [TGGGGTTCTTCAGCCTCTGTTCTTCCACTCATTATTATCATTTGCAGCTCCGAAATGGATCAGTTCAGTATGAACTGATTAGACCAATCAAGTACAGACCAAGGAGCATCATCAGGTGCTGTAGCACTACAAGGGGAAAAGCCAGGGAGGACTACTACCAAGTGCTGGGAGTGACGGTTAATTCAACGCCTTAGGAGATCAAGGAGGCTTACAGGAAGCTTCAGAAACGACACCATCCTGATATTGCTGGCTACAAGGGTCATGACTACACCCTACTGCTGAATGAGGCATACAAGGTGTTGATGAGAAATAGTCCCAGGAACGCTGGTGCTAGTGGCAGAGGCTTTGGCAGAGGTTTCACTGGAAACGGGTACAGTTGTTGGAATGGGCCTGTGAGAAGCCATGCACTCTTTGTCGACGAGAACAAATGCATAGGATGTAGGGAGTGCGTCCACCATGCCGGAGAGACATTCGCGATGGACGATGTTCTTGGAAGCGCTCACGTCGAAGTCCAGTTTGGAGACCAGGAGCAGAAGATACAGGTAGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCTAGCGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGGCGGCGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACAACTTCACCAAGAGGCTCCAGAGAGAGGAGCAACAGGACATGGCACGGCAGCAACGCTACAATAATGGTGATGCATGCGAGGAAGGTGAAACCGAACGGCAGGCCGAGGCGAGGCGTCGCGCAGGGCAGGAGCTCCGGTGGAAGCGTTTGCGCGATGTGTGGAATGGGCTGAGGGACTGGACGAAACCTGGTGTGGACGGCCCGTAGATTATCAGGCGCTCCTGGCTGCAGCTGAAGGACTAAAACAGGTTTGCATGCACTGTAAGTAGTGTAACCGTTTAAAAAAATATTATTCATCTCAAGTACAAACAGGGCATGATGTATAACGGGCACAACTCAACATCTAAAGTTAT]

[+] EMBL AK099499             [TGGGGTTCTTCAGCCTCTGTTCTTCCACTCATTATTATCATTTGCAGCTCCGAAATGGATCAGTTCAGTATGAACTGATTAGACCAATCAAGTACAGACCAAGGAGCATCATCAGGTGCTGTAGCACTACAAGGGGAAAAGCCAGGGAGGACTACTACCAAGTGCTGGGAGTGACGGTTAATTCAACGCCTTAGGAGATCAAGGAGGCTTACAGGAAGCTTCAGAAACGACACCATCCTGATATTGCTGGCTACAAGGGTCATGACTACACCCTACTGCTGAATGAGGCATACAAGGTGTTGATGAGAAATAGTCCCAGGAACGCTGGTGCTAGTGGCAGAGGCTTTGGCAGAGGTTTCACTGGAAACGGGTACAGTTGTTGGAATGGGCCTGTGAGAAGCCATGCACTCTTTGTCGACGAGAACAAATGCATAGGATGTAGGGAGTGCGTCCACCATGCCGGAGAGACATTCGCGATGGACGATGTTCTTGGAAGCGCTCACGTCGAAGTCCAGTTTGGAGACCAGGAGCAGAAGATACAGGTAGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCTAGCGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGGCGGCGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACAACTTCACCAAGAGGCTCCAGAGAGAGGAGCAACAGGACATGGCACGGCAGCAACGCTACAATAATGGTGATGCATGCGAGGAAGGTGAAACCGAACGGCAGGCCGAGGCGAGGCGTCGCGCAGGGCAGGAGCTCCGGTGGAAGCGTTTGCGCGATGTGTGGAATGGGCTGAGGGACTGGACGAAACCTGGTGTGGACGGCCCGTAGATTATCAGGCGCTCCTGGCTGCAGCTGAAGGACTAAAACAGGTTTGCATGCACTGTAAGTAGTGTAACCGTTTAAAAAAATATTATTCATCTCAAGTACAAACAGGGCATGATGTATAACGGGCACAACTCAACATCTAAAGTTAT]




>consensus_7467#1
TGGGGTTCTTCAGCCTCTGTTCTTCCACTCATTATTATCATTTGCAGCTCCGAAATGGAT
CAGTTCAGTATGAACTGATTAGACCAATCAAGTACAGACCAAGGAGCATCATCAGGTGCT
GTAGCACTACAAGGGGAAAAGCCAGGGAGGACTACTACCAAGTGCTGGGAGTGACGGTTA
ATTCAACGCCTTAGGAGATCAAGGAGGCTTACAGGAAGCTTCAGAAACGACACCATCCTG
ATATTGCTGGCTACAAGGGTCATGACTACACCCTACTGCTGAATGAGGCATACAAGGTGT
TGATGAGAAATAGTCCCAGGAACGCTGGTGCTAGTGGCAGAGGCTTTGGCAGAGGTTTCA
CTGGAAACGGGTACAGTTGTTGGAATGGGCCTGTGAGAAGCCATGCACTCTTTGTCGACG
AGAACAAATGCATAGGATGTAGGGAGTGCGTCCACCATGCCGGAGAGACATTCGCGATGG
ACGATGTTCTTGGAAGCGCTCACGTCGAAGTCCAGTTTGGAGACCAGGAGCAGAAGATAC
AGGTAGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCTAG
CGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGGCGGCG
GGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACAACTTCACCAAGAGGCTCCAGA
GAGAGGAGCAACAGGACATGGCACGGCAGCAACGCTACAATAATGGTGATGCATGCGAGG
AAGGTGAAACCGAACGGCAGGCCGAGGCGAGGCGTCGCGCAGGGCAGGAGCTCCGGTGGA
AGCGTTTGCGCGATGTGTGGAATGGGCTGAGGGACTGGACGAAACCTGGTGTGGACGGCC
CGTAGATTATCAGGCGCTCCTGGCTGCAGCTGAAGGACTAAAACAGGTTTGCATGCACTG
TAAGTAGTGTAACCGTTTAAAAAAATATTATTCATCTCAAGTACAAACAGGGCATGATGT
ATAACGGGCACAACTCAACATCTAAAGTTAT

consensusID : consensus_7467#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 564
fasta sequence 
                              [CGAATTCCATTTTGGAGACCAGGGACCAGAAGATACTAGGTAGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCTACGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGCGGCGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACTTCACCAAGAGGCTCCAGAGAGAGGAGCCACAGGACATGGCACGGCAGCAACGCTACAATAATGGTGATGCATGCGAGGAAGGTGAAACCGAACGGCAGGCCGAGGCGAGGCGTCGCGCAGGGCAGGAGCTCCGGTGGAAGCGTTTGCGCGATGTGTGGAATGGG-CTGAGGGACTGGACGAAACCTGGTGTGGACGGCCCGTAGATTATCAGGCGCGCCTGGCTGCAGCTGAAGGACTAAAACAGGTTTGCATGCACTGTAAGTAGTGTAACCGTTTAAAAAAATATTATTCATCTCAAGTACAAACAGGGCATGATGTATAAAAAAAAAATTCCNTCTCTTAATTTTTTTTATTAAAAGTTTTACAAAAA]

[+] EMBL BM419844             [CGAATTCCATTTTGGAGACCAGGGACCAGAAGATACTAGGTAGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCTACGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGCGGCGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACTTCACCAAGAGGCTCCAGAGAGAGGAGCCACAGGACATGGCACGGCAGCAACGCTACAATAATGGTGATGCATGCGAGGAAGGTGAAACCGAACGGCAGGCCGAGGCGAGGCGTCGCGCAGGGCAGGAGCTCCGGTGGAAGCGTTTGCGCGATGTGTGGAATGGG CTGAGGGACTGGACGAAACCTGGTGTGGACGGCCCGTAGATTATCAGGCGCGCCTGGCTGCAGCTGAAGGACTAAAACAGGTTTGCATGCACTGTAAGTAGTGTAACCGTTTAAAAAAATATTATTCATCTCAAGTACAAACAGGGCATGATGTATAAAAAAAAAA                                        ]
[+] EMBL BQ906541             [                                                                   GCATCCACTGGTTGATGAGCGAGGAGCTACGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGCGGCGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACTTCACCAAGAGGCTCCAGAGAGAGGAGCAACAGGACATGGCACGGCAGCAACGCTACAATAATGGTGATGCATGCGAGGAAGGTGAAACCGAACGGCAGGCCGAGGCGAGGCGTCGCGCAGGGCAGGAGCTCCGGTGGAAGCGTTTGCGCGATGTGTGGAATGGGACTGAGGGACTGGACGAAACCTGCTGTGGACGGCCCGTAGATTATCAGGCGCGCCTGGCTGCAGCTGAAGGACTAAAACAGGTTTGCATGCACTGTAAGTAGTGTAACCGTTTAAAAAAATATTATTCATCTCAAGTACAAACAGGGCATGATGTATAACGAAATTTTTCCNTCTCTTAATTTTTTTTATTAAAAGTTTTACAAAAA]




>consensus_7467#2
CGAATTCCATTTTGGAGACCAGGGACCAGAAGATACTAGGTAGCTGTGGAGTCGTGCCCA
GTGAACTGCATCCACTGGGTGATGAGCGAGGAGCTACGGTGCTGGAGTTCCTGGCACGGC
CACAGCAGAAGGAAGCGCACGGCGTGTTCGCGGCGGGTGGGAGAGGCCCCGGGACGTGTT
CGCTGCGGCCAACTTCACCAAGAGGCTCCAGAGAGAGGAGCCACAGGACATGGCACGGCA
GCAACGCTACAATAATGGTGATGCATGCGAGGAAGGTGAAACCGAACGGCAGGCCGAGGC
GAGGCGTCGCGCAGGGCAGGAGCTCCGGTGGAAGCGTTTGCGCGATGTGTGGAATGGGCT
GAGGGACTGGACGAAACCTGGTGTGGACGGCCCGTAGATTATCAGGCGCGCCTGGCTGCA
GCTGAAGGACTAAAACAGGTTTGCATGCACTGTAAGTAGTGTAACCGTTTAAAAAAATAT
TATTCATCTCAAGTACAAACAGGGCATGATGTATAAAAAAAAAATTCCNTCTCTTAATTT
TTTTTATTAAAAGTTTTACAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7467#1      TGGGGTTCTTCAGCCTCTGTTCTTCCACTCATTATTATCATTTGCAGCTCCGAAATGGAT 60
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      ---------TCAGCCTCTGTTCTTCCACTCATTATTATCATTTGCAGCTCCGAAATGGAT 51
                                                                                  

consensus_7467#1      CAGTTCAGTATGAACTGATTAGACCAATCAAGTACAGACCAAGGAGCATCATCAGGTGCT 120
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      CAGTTCAGTATGAACTGATTAGACCAATCAAGTACAGACCAAGGAGCATCATCAGGTGCT 111
                                                                                  

consensus_7467#1      GTAGCACTACAAGGGGAAAAGCCAGGGAGGACTACTACCAAGTGCTGGGAGTGACGGTTA 180
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      GTAGCACTACAAGGGGAAAAGCCAGGGAGGACTACTACTAAGTGCTGGGAGTGACGGTTA 171
                                                                                  

consensus_7467#1      ATTCAACGCCTTAGGAGATCAAGGAGGCTTACAGGAAGCTTCAGAAACGACACCATCCTG 240
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      ATTCAACGCCTTAGGAGATCAAGGAGGCTTACAGGAAGCTTCAGAAACGACACCATCCTG 231
                                                                                  

consensus_7467#1      ATATTGCTGGCTACAAGGGTCATGACTACACCCTACTGCTGAATGAGGCATACAAGGTGT 300
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      ATATTGCTGGCTACAAGGGTCATGACTACACCCTACTGCTGAATGAGGCATACAAGGTGT 291
                                                                                  

consensus_7467#1      TGATGAGAAATAGTCCCAGGAACGCTGGTGCTAGTGGCAGAGGCTTTGGCAGAGGTTTCA 360
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      TGATGAGAAATAGTCCCAGGAACGCTGGTGCTAGTGGCAGAGGCTTTGGCAGAGGTTTCA 351
                                                                                  

consensus_7467#1      CTGGAAACGGGTACAGTTGTTGGAATGGGCCTGTGAGAAGCCATGCACTCTTTGTCGACG 420
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      CTGGAAACGGGTACAGTTGTTGGAATGGGCCTGTGAGAAGCCATGCACTCTTTGTCGACG 411
                                                                                  

consensus_7467#1      AGAACAAATGCATAGGATGTAGGGAGTGCGTCCACCATGCCGGAGAGACATTCGCGATGG 480
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      AGAACAAATGCATAGGATGTAGGGAGTGCGTCCACCATGCCGGAGAGACATTCGCGATGG 471
                                                                                  

consensus_7467#1      ACGATGTTCTTGGAAGCGCTCACGTCGAAGTCCAGTTTGGAGACCAGGAGC-AGAAGATA 539
consensus_7467#2      -------------------------CGAATTCCATTTTGGAGACCAGGGACCAGAAGATA 35
consensus_7467#0      ACGATGTTCTTGGAAGCGCTCACGTCGAAGTCCAGTTTGGAGACCAGGAGT-AGAAGATA 530
                                               **** **** *************    ********

consensus_7467#1      C-AGGTAGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCT 598
consensus_7467#2      CTAGGTAGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCT 95
consensus_7467#0      C-AGGTAGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGGTGATGAGCGAGGAGCT 589
                      * **********************************************************

consensus_7467#1      AGCGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGGCGG 658
consensus_7467#2      A-CGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCG-CGG 153
consensus_7467#0      AGCGGTGCTGGAGTTCCTGGCACGGCCACAGCAGAAGGAAGCGCACGGCGTGTTCGGCGG 649
                      * ****************************************************** ***

consensus_7467#1      CGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACAACTTCACCAAGAGGCTCCA 718
consensus_7467#2      CGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAAC---TTCACCAAGAGGCTCCA 210
consensus_7467#0      CGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACAACTTCACCAAGAGGCTCCA 709
                      ****************************************   *****************

consensus_7467#1      GAGAGAGGAGCAACAGGACATGGCACGGCAGCAACGCTACAATAATGGTGATGCATGCGA 778
consensus_7467#2      GAGAGAGGAGCCACAGGACATGGCACGGCAGCAACGCTACAATAATGGTGATGCATGCGA 270
consensus_7467#0      GAGAGAGGAGCAACAGGACATGGCACGGCAGCAACGCTACAATAATGGTAAA----AAGA 765
                      *********** ************************************* *       **

consensus_7467#1      GGAAGGTGAAACCGAACGGCAGGCCGAGGCGAGGCGTCGCGCAGGGCAGGAGC------- 831
consensus_7467#2      GGAAGGTGAAACCGAACGGCAGGCCGAGGCGAGGCGTCGCGCAGGGCAGGAGC------- 323
consensus_7467#0      AATAACTGAAACCAAACGAACAGCTTCTAGCAGCTGTGAACCAGAAAAATAACGAAGAAG 825
                         *  ******* ****    **       **  **    ***   *  * *       

consensus_7467#1      TCCGGTGGAAGCGTTTGCGCGATGTGTGGAATGGGCTGAGGGACTGGACGAAACCTGGTG 891
consensus_7467#2      TCCGGTGGAAGCGTTTGCGCGATGTGTGGAATGGGCTGAGGGACTGGACGAAACCTGGTG 383
consensus_7467#0      TCCAAATTACCCTCTTAACCACAAAACCAGACATCCTTCACCCTTAGACTCGCTTTAGAG 885
                      ***     *  *  **   *          *    **       * ***      * * *

consensus_7467#1      TGGAC---GGCCCGTAGATTATCAGGCGC--TCCTGGCTGCAGCTGAAGGACTAAAACAG 946
consensus_7467#2      TGGAC---GGCCCGTAGATTATCAGGCGC--GCCTGGCTGCAGCTGAAGGACTAAAACAG 438
consensus_7467#0      CAGTTTCAGTCTAGTTGATACACACGTGATAGTCTAGTTAGCATAAAAGAATTAAGAAAA 945
                        *     * *  ** ***   ** * *     ** * *       *** * *** * * 

consensus_7467#1      GTTTGCATGCACTGTAAGT-AGTGTAACCGTTTAAAAAAATATTATTCATCTCAAGTACA 1005
consensus_7467#2      GTTTGCATGCACTGTAAGT-AGTGTAACCGTTTAAAAAAATATTATTCATCTCAAGTACA 497
consensus_7467#0      GCG-ATTTGATCCACACATCAGTTTGACCTTCTTAAGT--TTTTTTTAAAAAAATGTTCA 1002
                      *      **  *   *  * *** * *** * * **    * ** ** *    * ** **

consensus_7467#1      AACAGG-GCATGATGTATAACGGGCACAACTCAACATCTAAAGTTAT------------- 1051
consensus_7467#2      AACAGG-GCATGATGTATAAAAAAAA-AATTCCNTCTCTTAATTTTTTTTAT--TAAAAG 553
consensus_7467#0      AACCCACAAATCAAATCTGACATGTGAGTCTCACCGTTTTTATTCTTTTTATGCTAACCA 1062
                      ***      ** *  * * *          **    * *  * *  *             

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      TTTTACAAAAA------------------------------------------------- 564
consensus_7467#0      GACTACCACGTGTGTCACATGATTTTTTTTAGAGAAGAGTATTTTTTACCCAGTCTCTAC 1122
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      ATCCAACTGGATATATGCGGTCATTTAAATTAGGAACTTAGCCCCACAAACAACCCAATC 1182
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      TGAAATTCGCTTCGATGGAGATTTGAACTTAAAAACCTTGGGGTACTACTCAGGTCACAT 1242
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      GATAGTACCAAAATCGCTCCAAAACAAGTCAAGGAGATAATTTGTCCAATATAAAAATTT 1302
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      AGGGTGAAGAATGTCTGATTTCGTGGTTTAGAGGGGCAATTCGTACCGTCGCTCTAATTT 1362
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      AAAGTTGTACTTTTTTCCAAAAATAATGAAAAGGGAAAGAAAATTGATTTATTAAAGGGT 1422
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      TATTAGAATGTCAGGAAGTCAAGCGAGACAATATTTTGAATGCCATTTTATCGAAGCTAA 1482
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      CTTTCGGAGTGCCAAAATGTGGAAACCACATTTTAGAGTGTTAATAGAGCAATTTTCTCA 1542
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      GAATTTATATATGATTTTCACATTAATTAGTTCGATCCTATAAACCATTTTTAATTTTTT 1602
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      TTTTCTATATTCAAAAAGATGTAACGAAAAAAATATTCCCTCCATTTTATATTATAAGTC 1662
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      GCTTTGAATTTTAACCTAGCCAAACTTATTTAAGTTTAATCAAATTTATAGAAAAATTTA 1722
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      GCAACATCTACATAGAAAATTAGTTTCATCAAATTGAGCATTAAATATATTTGAGTAAAT 1782
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      TGCATTTAGGGCCACCTTTTATCACCAAAGTTCCACTTTGGACTACCCTTTAAACCATTT 1842
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      TTTCACTTTGGACTAGATTAGTTTGCCTCTGTTTCACTTTGAACCACCCCAAAAACTTTT 1902
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      CTCGAGCACATAAATGACTTTAACCACATCGGCACCCATAAACCAATAATCTTTCCGACT 1962
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      TATATATAGACTATTCTTCGTAAGATTAGAGGGTAGATGTAGCTAGAAAAGTGACTTGGG 2022
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      GTGGTCCAAACTGTAACAAAGGTAATCTTACCTAGTCTAAAGTGAAAATATTAGCTAGAG 2082
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      GGTGGTTCAAAGTGAAACTTTGGTAATAAAATGTGGACCAAAGTGCAATTAACTCTATAA 2142
                                                                                  

consensus_7467#1      ------------------------------------------------------------
consensus_7467#2      ------------------------------------------------------------
consensus_7467#0      TATATTTTAATAGTATATTTATTTGGTGTTAGAAACATTTTTATGTTCTTTTTTTTTTGT 2202
                                                                                  

consensus_7467#1      -----
consensus_7467#2      -----
consensus_7467#0      AAAAT 2207


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)