cluster # 7469

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Oryza sativa
cluster # 7469 cluster # 7469 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7469#0 length = 991 sequences # 3

consensus_7469#1 length = 710 sequences # 1

consensusID : consensus_7469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 991
fasta sequence

                              [GGCTCATTTGAGACGCGCACGAGATGAGCAGAGTCCGGAGAGAAACGCAAACCTGAGGCTCGAAGCGTATTTCTCTTCTGCGCCTTCGCTTTTGCCTAAGCACGATGTCTGCTACAATGGACATCGACGGCGCCGCCGCCAGCGCCGCCGCGGGCGGTGGGAGACATTCGGAGAAGGAGCTCTTCAGCGCGGCGGAGTCCGGGGACGCCGCGGCCTTCTCCTCCCTCTCCCCCGCCGACCTCGCCGCCGCGCTCGCCCTCCGCGATGAGGACGGCCGGTCCCTCCTCCACGTCGCCGCCGCCTCCGGCCACGCCCAGGTGGTGAGAGTGCTTGCCGCGATGGGCGGCGACGCGGCGGCCAGCGTTGTGAACGGGAAGGACGAGGAGGGGTGGGCGCCGATCCACACGGCGGCGAGCAGCGGAAAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTTGATTTGACAACCGATGCTGGCCGGACTGCTCTTCATTATGCTGCCAGTAAAGGACGGCTTAATATAGCAGAAACACTAATAGCGCACAGTGCAAATGTCAACAAGAAAGATAAGTTTGGGTGCACACCCTTACATAGAGCTGCCAGTACAGGAAAT-GCTGAACTGTGTGAATTCCTAATTGAGGAGGGGGCTGATGTTGATGCAGTTGACAAAACAGGACAAACACCACTAATGCATGCTGTTATTTCTGAGGACAAAGCGGTTGCTCTTCTGCTAGTTAGACATGGTGCTGATGTTGCCATTGAGGACAAGGAAGGCTATACCGTACTTGGTCGAGCATCTGATAGCTTTAGACCTGCACTAATTGATGCAGCCAAGGCAATGCTTGAAGGCTGAAAATGTTATGCTGCACAAAGGTTAACGAAGGGGAACAAATTTTGGTATCGAAAACCTGTACTAATTTTTTTTGGTTGAATCCTGTCTTTTTTAAGTATGAACCATTCTGATCTAGAATCAGATTTGAT]

[+] EMBL AK111573             [GGCTCATTTGAGACGCGCACGAGATGAGCAGAGTCCGGAGAGAAACGCAAACCTGAGGCTCGAAGCGTATTTCTCTTCTGCGCCTTCGCTTTTGCCTAAGCACGATGTCTGCTACAATGGACATCGACGGCGCCGCCGCCAGCGCCGCCGCGGGCGGTGGGAGACATTCGGAGAAGGAGCTCTTCAGCGCGGCGGAGTCCGGGGACGCCGCGGCCTTCTCCTCCCTCTCCCCCGCCGACCTCGCCGCCGCGCTCGCCCTCCGCGATGAGGACGGCCGGTCCCTCCTCCACGTCGCCGCCGCCTCCGGCCACGCCCAGGTGGTGAGAGTGCTTGCCGCGATGGGCGGCGACGCGGCGGCCAGCGTTGTGAACGGGAAGGACGAGGAGGGGTGGGCGCCGATCCACACGGCGGCGAGCAGCGGAAAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTTGATTTGACAACCGATGCTGGCCGGACTGCTCTTCATTATGCTGCCAGTAAAGGACGGCTTAATATAGCAGAAACACTAATAGCGCACAGTGCAAATGTCAACAAGAAAGATAAGTTTGGGTGCACACCCTTACATAGAGCTGCCAGTACAGGAAAT GCTGAACTGTGTGAATTCCTAATTGAGGAGGGGGCTGATGTTGATGCAGTTGACAAAACAGGACAAACACCACTAATGCATGCTGTTATTTCTGAGGACAAAGCGGTTGCTCTTCTGCTAGTTAGACATGGTGCTGATGTTGCCATTGAGGACAAGGAAGGCTATACCGTACTTGGTCGAGCATCTGATAGCTTTAGACCTGCACTAATTGATGCAGCCAAGGCAATGCTTGAAGGCTGAAAATGTTATGCTGCACAAAGGTTAACGAAGGGGAACAAATTTTGGTATCGAAAACCTGTACTAATTTTTTTTGGTTGAATCCTGTCTTTTTTAAGTATGAACCATTCTGATCTAGAATCAGATTTGAT]
[+] EMBL CA754002             [                                                  ACCTGAGGCTCGAAGCGTATTTCTCTTCTGCGCCTTCGCTTTTGCCTAAGCACGATGTCTGCTACAATGGACATCGACGGCGCCGCCGCCAGCGCCGCCGCGGGCGGTGGGAGACATTCGGAGAAGGAGCTCTTCAGCGCGGCGGAGTCCGGGGACGCCGCGGCCTTCTCCTCCCTCTCCCCCGCCGACCTCGCCGCCGCGCTCGCCCTCCGCGATGAGGACGGCCGGTCCCTCCTCCACGTCGCCGCCGCCTCCGGCCACGCCCAGGTGGTGAGAGTGCTTGCCGCGATGGGCGGCGACGCGGCGGCCAGCGTTGTGAACGGGAAGGACGAGGAGGGGTGGGCGCCGATCCACACGGCGGCGAGCAGCGGAAAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTTGATTTGACAACCGATGCTGGCCGGACTGCTCTTCATTATGCTGCCAGGTAAGGACGGCTTAATATAGCAGAAACACTAATAGCGCACAGTGGCAATGTCAACAAGAAAGATGAGTTTGGGTGCACACCCTTTCATAGAGCTGGCAGTACAGGAAATGGCTGAACTGGGGGAATTCCTAATTGAGGAag                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF307030             [                                                                                                                                                                                                                     CCTTCTCCTCCCTCTCCCCCGCCGACCTCGCCGCCGCGCTCGCCCTCCGCGATGAGGACGGCCGGTCCCTCCTCCACGTCGCCGCCGCCTCCGGCCACGCCCAGGTGGTGAGAGTGCTTGCCGCGATGGGCGGCGACGCGGCGGCCAGCGTTGTGAACGGGAAGGACGAGGAGGGGTGGGCGCCGATCCACACGGCGGCGAGCAGCGGAAAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTTGATTTGACAACCGATGCTGGCCGGACTGCTCTTCATTATGCTGCCAGTAAAGGACGGCTTAATATAGCAGAAACACTAATAGCGCACAGTGCAAATGTCAACAAGAAAGATAAGTTTGGGTGCACACCCTTACATAGAGCTGCCAGTACAGGAAAT GCTGAACTGTGTGAATTCCTAATTGAGGAGGGGGCTGATGTTGATGCAGTTGACAAAACAGGACAAACACCACT                                                                                                                                                                                                                                                                                                      ]




>consensus_7469#0
GGCTCATTTGAGACGCGCACGAGATGAGCAGAGTCCGGAGAGAAACGCAAACCTGAGGCT
CGAAGCGTATTTCTCTTCTGCGCCTTCGCTTTTGCCTAAGCACGATGTCTGCTACAATGG
ACATCGACGGCGCCGCCGCCAGCGCCGCCGCGGGCGGTGGGAGACATTCGGAGAAGGAGC
TCTTCAGCGCGGCGGAGTCCGGGGACGCCGCGGCCTTCTCCTCCCTCTCCCCCGCCGACC
TCGCCGCCGCGCTCGCCCTCCGCGATGAGGACGGCCGGTCCCTCCTCCACGTCGCCGCCG
CCTCCGGCCACGCCCAGGTGGTGAGAGTGCTTGCCGCGATGGGCGGCGACGCGGCGGCCA
GCGTTGTGAACGGGAAGGACGAGGAGGGGTGGGCGCCGATCCACACGGCGGCGAGCAGCG
GAAAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTTGATTTGACAACCG
ATGCTGGCCGGACTGCTCTTCATTATGCTGCCAGTAAAGGACGGCTTAATATAGCAGAAA
CACTAATAGCGCACAGTGCAAATGTCAACAAGAAAGATAAGTTTGGGTGCACACCCTTAC
ATAGAGCTGCCAGTACAGGAAATGCTGAACTGTGTGAATTCCTAATTGAGGAGGGGGCTG
ATGTTGATGCAGTTGACAAAACAGGACAAACACCACTAATGCATGCTGTTATTTCTGAGG
ACAAAGCGGTTGCTCTTCTGCTAGTTAGACATGGTGCTGATGTTGCCATTGAGGACAAGG
AAGGCTATACCGTACTTGGTCGAGCATCTGATAGCTTTAGACCTGCACTAATTGATGCAG
CCAAGGCAATGCTTGAAGGCTGAAAATGTTATGCTGCACAAAGGTTAACGAAGGGGAACA
AATTTTGGTATCGAAAACCTGTACTAATTTTTTTTGGTTGAATCCTGTCTTTTTTAAGTA
TGAACCATTCTGATCTAGAATCAGATTTGAT

consensusID : consensus_7469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [GCAGAGTCCGGAGAGAAACGCAAACCTGAGGCTCGAAGCGTATTTCTCTTCTGCGCCTTCGCTTTTGCCTAAGCACGATGTCTGCTACAATGGACATCGACGGCGCCGCCGATCCACACGGCGGCGAGCAGCGGAAAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTTGATTTGACAACCGATGCTGGCCGGACTGCTCTTCATTATGCTGCCAGTAAAGGACGGCTTAATATAGCAGAAACACTAATAGCGCACAGTGCAAATGTCAACAAGAAAGATAAGGAAATGCTGAACTGTGTGAATTCCTAATTGAGGAGGGGGCTGATGTTGATGCAGTTGACAAAACAGGACAAACACCACTAATGCATGCTGTTATTTCTGAGGACAAAGCGGTTGCTCTTCTGCTAGTTAGACATGGTGCTGATGTTGCCATTGAGGACAAGGAAGGCTATACCGTACTTGGTCGAGCATCTGATAGCTTTAGACCTGCACTAATTGATGCAGCCAAGGCAATGCTTGAAGGCTGAAAATGTTATGCTGCACAAAGGTTAACGAAGGGGAACAAATTTTGGTATCGAAAACCTGTACTAATTTTTTTTGGTTGAATCCTGTCTTTTTTAAGTATGAACCATTCTGATCTAGAATCAGATTTGATCAACTGGACCATAATTCATACTAGCCAAGAATTATTGTAGTAA]

[+] EMBL AK062704             [GCAGAGTCCGGAGAGAAACGCAAACCTGAGGCTCGAAGCGTATTTCTCTTCTGCGCCTTCGCTTTTGCCTAAGCACGATGTCTGCTACAATGGACATCGACGGCGCCGCCGATCCACACGGCGGCGAGCAGCGGAAAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTTGATTTGACAACCGATGCTGGCCGGACTGCTCTTCATTATGCTGCCAGTAAAGGACGGCTTAATATAGCAGAAACACTAATAGCGCACAGTGCAAATGTCAACAAGAAAGATAAGGAAATGCTGAACTGTGTGAATTCCTAATTGAGGAGGGGGCTGATGTTGATGCAGTTGACAAAACAGGACAAACACCACTAATGCATGCTGTTATTTCTGAGGACAAAGCGGTTGCTCTTCTGCTAGTTAGACATGGTGCTGATGTTGCCATTGAGGACAAGGAAGGCTATACCGTACTTGGTCGAGCATCTGATAGCTTTAGACCTGCACTAATTGATGCAGCCAAGGCAATGCTTGAAGGCTGAAAATGTTATGCTGCACAAAGGTTAACGAAGGGGAACAAATTTTGGTATCGAAAACCTGTACTAATTTTTTTTGGTTGAATCCTGTCTTTTTTAAGTATGAACCATTCTGATCTAGAATCAGATTTGATCAACTGGACCATAATTCATACTAGCCAAGAATTATTGTAGTAA]




>consensus_7469#1
GCAGAGTCCGGAGAGAAACGCAAACCTGAGGCTCGAAGCGTATTTCTCTTCTGCGCCTTC
GCTTTTGCCTAAGCACGATGTCTGCTACAATGGACATCGACGGCGCCGCCGATCCACACG
GCGGCGAGCAGCGGAAAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTT
GATTTGACAACCGATGCTGGCCGGACTGCTCTTCATTATGCTGCCAGTAAAGGACGGCTT
AATATAGCAGAAACACTAATAGCGCACAGTGCAAATGTCAACAAGAAAGATAAGGAAATG
CTGAACTGTGTGAATTCCTAATTGAGGAGGGGGCTGATGTTGATGCAGTTGACAAAACAG
GACAAACACCACTAATGCATGCTGTTATTTCTGAGGACAAAGCGGTTGCTCTTCTGCTAG
TTAGACATGGTGCTGATGTTGCCATTGAGGACAAGGAAGGCTATACCGTACTTGGTCGAG
CATCTGATAGCTTTAGACCTGCACTAATTGATGCAGCCAAGGCAATGCTTGAAGGCTGAA
AATGTTATGCTGCACAAAGGTTAACGAAGGGGAACAAATTTTGGTATCGAAAACCTGTAC
TAATTTTTTTTGGTTGAATCCTGTCTTTTTTAAGTATGAACCATTCTGATCTAGAATCAG
ATTTGATCAACTGGACCATAATTCATACTAGCCAAGAATTATTGTAGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7469#0      GGCTCATTTGAGACGCGCACGAGATGAGCAGAGTCCGGAGAGAAACGCAAACCTGAGGCT 60
consensus_7469#1      ------------------------------------------------------------
                                                                                  

consensus_7469#0      CGAAGCGTATTTCTCTTCTGCGCCTTCGCTTTTGCCTAAGCACGATGTCTGCTACAATGG 120
consensus_7469#1      ------------------------------------------------------------
                                                                                  

consensus_7469#0      ACATCGACGGCGCCGCCGCCAGCGCCGCCGCGGGCGGTGGGAGACATTCGGAGAAGGAGC 180
consensus_7469#1      ------------------------------------------------------------
                                                                                  

consensus_7469#0      TCTTCAGCGCGGCGGAGTCCGGGGACGCCGCGGCCTTCTCCTCCCTCTCCCCCGCCGACC 240
consensus_7469#1      ------------------------------------------------------------
                                                                                  

consensus_7469#0      TCGCCGCCGCGCTCGCCCTCCGCGATGAGGACGGCCGGTCCCTCCTCCACGTCGCCGCCG 300
consensus_7469#1      --------------------------------------------------GCAGAGTCCG 10
                                                                        *  *   ***

consensus_7469#0      CCTCCGGCCACGC-CCAGGTGGTGAGAGTGCTTGCCGCGATGGGCGGCGACGCGGCGGCC 359
consensus_7469#1      GAGAGAAACGCAAACCTGAGGCTCGAAGCGTATTTCTCT-TCTGCGCCTTCGCTTTTGCC 69
                              * *   ** *  * *   ** *  *  * *  *  *** *  ***    ***

consensus_7469#0      --AGCGTTGTGAACGGGAAGGACGAGGAGGGGTGGG--CGCCGATCCACACGGCGGCGAG 415
consensus_7469#1      TAAGCACGATGT-CTGCTACAATGGACATCGACGGCGCCGCCGATCCACACGGCGGCGAG 128
                        ***    **  * *  *  * *   *  *  **   **********************

consensus_7469#0      CAGCGGAAAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTTGATTTGAC 475
consensus_7469#1      CAGCGGAAAAGCTGAGATCATCTCCATCCTGCTCGATCAAGGTGCTAATGTTGATTTGAC 188
                      ************************************************************

consensus_7469#0      AACCGATGCTGGCCGGACTGCTCTTCATTATGCTGCCAGTAAAGGACGGCTTAATATAGC 535
consensus_7469#1      AACCGATGCTGGCCGGACTGCTCTTCATTATGCTGCCAGTAAAGGACGGCTTAATATAGC 248
                      ************************************************************

consensus_7469#0      AGAAACACTAATAGCGCACAGTGCAAATGTCAACAAGAAAGATAAGTTTGGGTGCACACC 595
consensus_7469#1      AGAAACACTAATAGCGCACAGTGCAAATGTCAACAAGAAAGATAAG-------------- 294
                      **********************************************              

consensus_7469#0      CTTACATAGAGCTGCCAGTACAGGAAATGCTGAACTGTGTGAATTCCTAATTGAGGAGGG 655
consensus_7469#1      -----------------------GAAATGCTGAACTGTGTGAATTCCTAATTGAGGAGGG 331
                                             *************************************

consensus_7469#0      GGCTGATGTTGATGCAGTTGACAAAACAGGACAAACACCACTAATGCATGCTGTTATTTC 715
consensus_7469#1      GGCTGATGTTGATGCAGTTGACAAAACAGGACAAACACCACTAATGCATGCTGTTATTTC 391
                      ************************************************************

consensus_7469#0      TGAGGACAAAGCGGTTGCTCTTCTGCTAGTTAGACATGGTGCTGATGTTGCCATTGAGGA 775
consensus_7469#1      TGAGGACAAAGCGGTTGCTCTTCTGCTAGTTAGACATGGTGCTGATGTTGCCATTGAGGA 451
                      ************************************************************

consensus_7469#0      CAAGGAAGGCTATACCGTACTTGGTCGAGCATCTGATAGCTTTAGACCTGCACTAATTGA 835
consensus_7469#1      CAAGGAAGGCTATACCGTACTTGGTCGAGCATCTGATAGCTTTAGACCTGCACTAATTGA 511
                      ************************************************************

consensus_7469#0      TGCAGCCAAGGCAATGCTTGAAGGCTGAAAATGTTATGCTGCACAAAGGTTAACGAAGGG 895
consensus_7469#1      TGCAGCCAAGGCAATGCTTGAAGGCTGAAAATGTTATGCTGCACAAAGGTTAACGAAGGG 571
                      ************************************************************

consensus_7469#0      GAACAAATTTTGGTATCGAAAACCTGTACTAATTTTTTTTGGTTGAATCCTGTCTTTTTT 955
consensus_7469#1      GAACAAATTTTGGTATCGAAAACCTGTACTAATTTTTTTTGGTTGAATCCTGTCTTTTTT 631
                      ************************************************************

consensus_7469#0      AAGTATGAACCATTCTGATCTAGAATCAGATTTGAT------------------------ 991
consensus_7469#1      AAGTATGAACCATTCTGATCTAGAATCAGATTTGATCAACTGGACCATAATTCATACTAG 691
                      ************************************                        

consensus_7469#0      -------------------
consensus_7469#1      CCAAGAATTATTGTAGTAA 710