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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1690 fasta sequence
[TTTTTCACGATTTTCACCGGACAGCTTCTTGGGTAATCCTGGACTCTGTGGCTATTGGCTTGGTTCTTCGTGCTACTCCACCAGTCATGTGCAGAGATCCTCTGTCTCAAGGTCTGCAATTCTTGGGATTGCTGTAGCTGGGCTTGTTATCCTGCTGATGATCCTAGCTGCTGCTTGCTGGCCACACTGGGCACAAGTTCCCAAAGATGTGTCTTTATGTAAACCAGATATCCATGCACTACCATCAAGTAATGTTCCTCCAAAGCTTGTAATCCTTCACATGAACATGGCATTCCTTGTGTACGAAGATATAATGAGGATGACTGAAAATTTGAGCGAGAAGTACATTATCGGGTATGGGGCATCAAGCACAGTGTACAAATGTGTACTGAAGAACTGCAAGCCGGTTGCAATAAAAAAATTGTATGCTCACTACCCACAGAGCCTGAAGGAATTCGAGACTGAGCTTGAGACTGTTGGAAGTATCAAGCACCGGAATCTTGTCAGCCTTCAAGGGTATTCCCTATCACCTGCTGGGAATCTTCTCTTCTACGACTACTTGGAAAATGGCAGTCTCTGGGATGTTTTACATGCAGGCTCATCCAAGAAGCAAAAACTAGATTGGGAGGCTAGGCTCCGGATTGCTCTCGGTGCGGCACAAGGTCTGGCTTATCTTCATCATGACTGCAACCCACGGATAATTCATAGGGATGTGAAGTCGAAGAATATCCTTCTAGACAAGGACTATGAAGCACATCTTGCCGACTTTGGTATTGCCAAGAGCTTGTGCACCTCAAAGACACACACATCAACCTATGTGATGGGTACTATAGGCTACATTGACCCTGAGTACGCATGCACATCCCGCCTCAACGAGAAATCGGATGTCTACAGCTATGGCATTGTCCTCCTGGAGCTACTTACAGGCAAAAAGCCAGTCGATAATGAGTGCAATCTCCATCACTTGATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACATCGCCGATACGTGCAAAGATCTTGGCGAGGTCAAGAAGGTGTTCCAGTTGGCGCTCCTTTGCAGCAAGAGGCAGCCTTCTGATCGACCGACGATGCACGAGGTCGTGCGTGTCCTGGACTGCCTCGTCTACCCCGACCCGCCCTCAAAGCCGGCACTGCCACCGGCATTGCCACAGTCGTCCACGGTTCCGAGCTATGTCAACGAGTACGTGAGCCTACGAGGCGGCAGCACGCTCTCCTGTGAAAATTCGTCGAGCGCGTCAGATGCGGAGCTCTTCCTGAAGTTCGGCGAGGTGATATCACAGAACACAGAGTAGAGTGACTATCTGAATATCCTGATGGCTTTGTGCTTTGTGGCGTTGGCGTTCTAGCTAAGTTACCAGCTTTTGTGCCCTTCCTGGAATAAGAAGGGACACCGACGAAGGGCTGGCTATTCGCTGCTGTAAATATGCTGTCTTCTGGTTTGTTAGGCCTTCGGAAAGCTATTTGGCCTTCCTGTTTTGATCAGTTTTTCTTCTTATCATTATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATGAATTTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAAAATTGGTTTTGTTGGATAAAAAAAAAAA]
[+] EMBL AK060260 [TTTTTCACGATTTTCACCGGACAGCTTCTTGGGTAATCCTGGACTCTGTGGCTATTGGCTTGGTTCTTCGTGCTACTCCACCAGTCATGTGCAGAGATCCTCTGTCTCAAGGTCTGCAATTCTTGGGATTGCTGTAGCTGGGCTTGTTATCCTGCTGATGATCCTAGCTGCTGCTTGCTGGCCACACTGGGCACAAGTTCCCAAAGATGTGTCTTTATGTAAACCAGATATCCATGCACTACCATCAAGTAATGTTCCTCCAAAGCTTGTAATCCTTCACATGAACATGGCATTCCTTGTGTACGAAGATATAATGAGGATGACTGAAAATTTGAGCGAGAAGTACATTATCGGGTATGGGGCATCAAGCACAGTGTACAAATGTGTACTGAAGAACTGCAAGCCGGTTGCAATAAAAAAATTGTATGCTCACTACCCACAGAGCCTGAAGGAATTCGAGACTGAGCTTGAGACTGTTGGAAGTATCAAGCACCGGAATCTTGTCAGCCTTCAAGGGTATTCCCTATCACCTGCTGGGAATCTTCTCTTCTACGACTACTTGGAAAATGGCAGTCTCTGGGATGTTTTACATGCAGGCTCATCCAAGAAGCAAAAACTAGATTGGGAGGCTAGGCTCCGGATTGCTCTCGGTGCGGCACAAGGTCTGGCTTATCTTCATCATGACTGCAACCCACGGATAATTCATAGGGATGTGAAGTCGAAGAATATCCTTCTAGACAAGGACTATGAAGCACATCTTGCCGACTTTGGTATTGCCAAGAGCTTGTGCACCTCAAAGACACACACATCAACCTATGTGATGGGTACTATAGGCTACATTGACCCTGAGTACGCATGCACATCCCGCCTCAACGAGAAATCGGATGTCTACAGCTATGGCATTGTCCTCCTGGAGCTACTTACAGGCAAAAAGCCAGTCGATAATGAGTGCAATCTCCATCACTTGATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACATCGCCGATACGTGCAAAGATCTTGGCGAGGTCAAGAAGGTGTTCCAGTTGGCGCTCCTTTGCAGCAAGAGGCAGCCTTCTGATCGACCGACGATGCACGAGGTCGTGCGTGTCCTGGACTGCCTCGTCTACCCCGACCCGCCCTCAAAGCCGGCACTGCCACCGGCATTGCCACAGTCGTCCACGGTTCCGAGCTATGTCAACGAGTACGTGAGCCTACGAGGCGGCAGCACGCTCTCCTGTGAAAATTCGTCGAGCGCGTCAGATGCGGAGCTCTTCCTGAAGTTCGGCGAGGTGATATCACAGAACACAGAGTAGAGTGACTATCTGAATATCCTGATGGCTTTGTGCTTTGTGGCGTTGGCGTTCTAGCTAAGTTACCAGCTTTTGTGCCCTTCCTGGAATAAGAAGGGACACCGACGAAGGGCTGGCTATTCGCTGCTGTAAATATGCTGTCTTCTGGTTTGTTAGGCCTTCGGAAAGCTATTTGGCCTTCCTGTTTTGATCAGTTTTTCTTCTTATCATTATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATGAATTTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAAAATTGGT ]
[+] EMBL C22691 [ CCATCACTTGATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACATCGNCGATACGTGCAAAGATCTTGGCGAGGTCANGAAGGTGTTCCAGTTGGCGCTCCTTTGCAGCAAGAGGCNGCCTTCTGATCGACCGANGATGCACGAGGTCGTGCGTGTCCTGGACTGCCTCGTCTACCCCGANCCGCCCTCAAAGCCGGCACTGNCANCGGCATTGCNACAGTCGTCCACGGTTCCGAGCTATGTCAANGAGTACGTGAGCCTANGAGGCGGCAGCACGCTCTCCTGTGAAAATTCGTCGAGCGCGTC ]
[+] EMBL C22692 [ GGCAGCACGCTCTCCTGTGAAAATTCGTCGAGCGCGTCAGATGCGGAGCTCTTCCTGAAGTTCGGCGAGGTGATATCACAGAACACAGAGTAGAGTGACTATCTGAATATCCTGATGGCTTTGTGCTTTGTGGCGTTGGCGTTCTAGCTAAGTTACCAGCTTTTGTGTCCTTCCTGGAATAAGAAGGGACACCGACGAAGGGCTGGCTATTCGCTGCTGTAAATATGCTGTCTTCTGGTTTGTTAGGCCTTCGGAAAGCTATTTGGCCTTCCTGTTTTGATCAGTTTTTCTTCTTATCATTATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATGAATTTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAAAATTGGTTTTGTTGGATAAAAAAAAAAA]
consensusID : consensus_7470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence
[TTCGCTGCTGTAAATATGCCGTCTTCTGGGTTTTTCGTTAGGCCTCTCGGAAAAGCCTATTTTGGCCCTTCCCCTGTTTTGATCCACGTGTTTTGCTTGCTTATGCATTATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATTGAATTTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAAAATTGGTTTTGTTGGAAAAAAAAAA]
[+] EMBL BI805997 [TTCGCTGCTGTAAATATGCCGTCTTCTGGGTTTTTCGTTAGGCCTCTCGGAAAAGCCTATTTTGGCCCTTCCCCTGTTTTGATCCACGTGTTTTGCTTGCTTATGCATTATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATTGAATTTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAAAATTGGTTTTGTTGGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7470#0 TTTTTCACGATTTTCACCGGACAGCTTCTTGGGTAATCCTGGACTCTGTGGCTATTGGCT 60
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 TGGTTCTTCGTGCTACTCCACCAGTCATGTGCAGAGATCCTCTGTCTCAAGGTCTGCAAT 120
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 TCTTGGGATTGCTGTAGCTGGGCTTGTTATCCTGCTGATGATCCTAGCTGCTGCTTGCTG 180
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 GCCACACTGGGCACAAGTTCCCAAAGATGTGTCTTTATGTAAACCAGATATCCATGCACT 240
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 ACCATCAAGTAATGTTCCTCCAAAGCTTGTAATCCTTCACATGAACATGGCATTCCTTGT 300
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 GTACGAAGATATAATGAGGATGACTGAAAATTTGAGCGAGAAGTACATTATCGGGTATGG 360
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 GGCATCAAGCACAGTGTACAAATGTGTACTGAAGAACTGCAAGCCGGTTGCAATAAAAAA 420
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 ATTGTATGCTCACTACCCACAGAGCCTGAAGGAATTCGAGACTGAGCTTGAGACTGTTGG 480
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 AAGTATCAAGCACCGGAATCTTGTCAGCCTTCAAGGGTATTCCCTATCACCTGCTGGGAA 540
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 TCTTCTCTTCTACGACTACTTGGAAAATGGCAGTCTCTGGGATGTTTTACATGCAGGCTC 600
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 ATCCAAGAAGCAAAAACTAGATTGGGAGGCTAGGCTCCGGATTGCTCTCGGTGCGGCACA 660
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 AGGTCTGGCTTATCTTCATCATGACTGCAACCCACGGATAATTCATAGGGATGTGAAGTC 720
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 GAAGAATATCCTTCTAGACAAGGACTATGAAGCACATCTTGCCGACTTTGGTATTGCCAA 780
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 GAGCTTGTGCACCTCAAAGACACACACATCAACCTATGTGATGGGTACTATAGGCTACAT 840
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 TGACCCTGAGTACGCATGCACATCCCGCCTCAACGAGAAATCGGATGTCTACAGCTATGG 900
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 CATTGTCCTCCTGGAGCTACTTACAGGCAAAAAGCCAGTCGATAATGAGTGCAATCTCCA 960
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 TCACTTGATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACAT 1020
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 CGCCGATACGTGCAAAGATCTTGGCGAGGTCAAGAAGGTGTTCCAGTTGGCGCTCCTTTG 1080
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 CAGCAAGAGGCAGCCTTCTGATCGACCGACGATGCACGAGGTCGTGCGTGTCCTGGACTG 1140
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 CCTCGTCTACCCCGACCCGCCCTCAAAGCCGGCACTGCCACCGGCATTGCCACAGTCGTC 1200
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 CACGGTTCCGAGCTATGTCAACGAGTACGTGAGCCTACGAGGCGGCAGCACGCTCTCCTG 1260
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 TGAAAATTCGTCGAGCGCGTCAGATGCGGAGCTCTTCCTGAAGTTCGGCGAGGTGATATC 1320
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 ACAGAACACAGAGTAGAGTGACTATCTGAATATCCTGATGGCTTTGTGCTTTGTGGCGTT 1380
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 GGCGTTCTAGCTAAGTTACCAGCTTTTGTGCCCTTCCTGGAATAAGAAGGGACACCGACG 1440
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 AAGGGCTGGCTATTCGCTGCTGTAAATATGCTGTCTTCTGG----TTTGTTAGGCCT-TC 1495
consensus_7470#1 ------------TTCGCTGCTGTAAATATGCCGTCTTCTGGGTTTTTCGTTAGGCCTCTC 48
******************* ********* ** ********* **
consensus_7470#0 GGAAAG--CTATTT-GGCCTT---CCTGTTTTGATCA----GTTTTTCTT-CTTAT-CAT 1543
consensus_7470#1 GGAAAAGCCTATTTTGGCCCTTCCCCTGTTTTGATCCACGTGTTTTGCTTGCTTATGCAT 108
***** ****** **** * ************ ***** *** ***** ***
consensus_7470#0 TATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTAT-GAAT 1602
consensus_7470#1 TATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATTGAAT 168
******************************************************* ****
consensus_7470#0 TTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAA 1662
consensus_7470#1 TTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAA 228
************************************************************
consensus_7470#0 AATTGGTTTTGTTGGATAAAAAAAAAAA 1690
consensus_7470#1 AATTGGTTTTGTTGGAAAAAAAAAA--- 253
**************** ********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||