These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1690 fasta sequence [TTTTTCACGATTTTCACCGGACAGCTTCTTGGGTAATCCTGGACTCTGTGGCTATTGGCTTGGTTCTTCGTGCTACTCCACCAGTCATGTGCAGAGATCCTCTGTCTCAAGGTCTGCAATTCTTGGGATTGCTGTAGCTGGGCTTGTTATCCTGCTGATGATCCTAGCTGCTGCTTGCTGGCCACACTGGGCACAAGTTCCCAAAGATGTGTCTTTATGTAAACCAGATATCCATGCACTACCATCAAGTAATGTTCCTCCAAAGCTTGTAATCCTTCACATGAACATGGCATTCCTTGTGTACGAAGATATAATGAGGATGACTGAAAATTTGAGCGAGAAGTACATTATCGGGTATGGGGCATCAAGCACAGTGTACAAATGTGTACTGAAGAACTGCAAGCCGGTTGCAATAAAAAAATTGTATGCTCACTACCCACAGAGCCTGAAGGAATTCGAGACTGAGCTTGAGACTGTTGGAAGTATCAAGCACCGGAATCTTGTCAGCCTTCAAGGGTATTCCCTATCACCTGCTGGGAATCTTCTCTTCTACGACTACTTGGAAAATGGCAGTCTCTGGGATGTTTTACATGCAGGCTCATCCAAGAAGCAAAAACTAGATTGGGAGGCTAGGCTCCGGATTGCTCTCGGTGCGGCACAAGGTCTGGCTTATCTTCATCATGACTGCAACCCACGGATAATTCATAGGGATGTGAAGTCGAAGAATATCCTTCTAGACAAGGACTATGAAGCACATCTTGCCGACTTTGGTATTGCCAAGAGCTTGTGCACCTCAAAGACACACACATCAACCTATGTGATGGGTACTATAGGCTACATTGACCCTGAGTACGCATGCACATCCCGCCTCAACGAGAAATCGGATGTCTACAGCTATGGCATTGTCCTCCTGGAGCTACTTACAGGCAAAAAGCCAGTCGATAATGAGTGCAATCTCCATCACTTGATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACATCGCCGATACGTGCAAAGATCTTGGCGAGGTCAAGAAGGTGTTCCAGTTGGCGCTCCTTTGCAGCAAGAGGCAGCCTTCTGATCGACCGACGATGCACGAGGTCGTGCGTGTCCTGGACTGCCTCGTCTACCCCGACCCGCCCTCAAAGCCGGCACTGCCACCGGCATTGCCACAGTCGTCCACGGTTCCGAGCTATGTCAACGAGTACGTGAGCCTACGAGGCGGCAGCACGCTCTCCTGTGAAAATTCGTCGAGCGCGTCAGATGCGGAGCTCTTCCTGAAGTTCGGCGAGGTGATATCACAGAACACAGAGTAGAGTGACTATCTGAATATCCTGATGGCTTTGTGCTTTGTGGCGTTGGCGTTCTAGCTAAGTTACCAGCTTTTGTGCCCTTCCTGGAATAAGAAGGGACACCGACGAAGGGCTGGCTATTCGCTGCTGTAAATATGCTGTCTTCTGGTTTGTTAGGCCTTCGGAAAGCTATTTGGCCTTCCTGTTTTGATCAGTTTTTCTTCTTATCATTATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATGAATTTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAAAATTGGTTTTGTTGGATAAAAAAAAAAA] [+] EMBL AK060260 [TTTTTCACGATTTTCACCGGACAGCTTCTTGGGTAATCCTGGACTCTGTGGCTATTGGCTTGGTTCTTCGTGCTACTCCACCAGTCATGTGCAGAGATCCTCTGTCTCAAGGTCTGCAATTCTTGGGATTGCTGTAGCTGGGCTTGTTATCCTGCTGATGATCCTAGCTGCTGCTTGCTGGCCACACTGGGCACAAGTTCCCAAAGATGTGTCTTTATGTAAACCAGATATCCATGCACTACCATCAAGTAATGTTCCTCCAAAGCTTGTAATCCTTCACATGAACATGGCATTCCTTGTGTACGAAGATATAATGAGGATGACTGAAAATTTGAGCGAGAAGTACATTATCGGGTATGGGGCATCAAGCACAGTGTACAAATGTGTACTGAAGAACTGCAAGCCGGTTGCAATAAAAAAATTGTATGCTCACTACCCACAGAGCCTGAAGGAATTCGAGACTGAGCTTGAGACTGTTGGAAGTATCAAGCACCGGAATCTTGTCAGCCTTCAAGGGTATTCCCTATCACCTGCTGGGAATCTTCTCTTCTACGACTACTTGGAAAATGGCAGTCTCTGGGATGTTTTACATGCAGGCTCATCCAAGAAGCAAAAACTAGATTGGGAGGCTAGGCTCCGGATTGCTCTCGGTGCGGCACAAGGTCTGGCTTATCTTCATCATGACTGCAACCCACGGATAATTCATAGGGATGTGAAGTCGAAGAATATCCTTCTAGACAAGGACTATGAAGCACATCTTGCCGACTTTGGTATTGCCAAGAGCTTGTGCACCTCAAAGACACACACATCAACCTATGTGATGGGTACTATAGGCTACATTGACCCTGAGTACGCATGCACATCCCGCCTCAACGAGAAATCGGATGTCTACAGCTATGGCATTGTCCTCCTGGAGCTACTTACAGGCAAAAAGCCAGTCGATAATGAGTGCAATCTCCATCACTTGATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACATCGCCGATACGTGCAAAGATCTTGGCGAGGTCAAGAAGGTGTTCCAGTTGGCGCTCCTTTGCAGCAAGAGGCAGCCTTCTGATCGACCGACGATGCACGAGGTCGTGCGTGTCCTGGACTGCCTCGTCTACCCCGACCCGCCCTCAAAGCCGGCACTGCCACCGGCATTGCCACAGTCGTCCACGGTTCCGAGCTATGTCAACGAGTACGTGAGCCTACGAGGCGGCAGCACGCTCTCCTGTGAAAATTCGTCGAGCGCGTCAGATGCGGAGCTCTTCCTGAAGTTCGGCGAGGTGATATCACAGAACACAGAGTAGAGTGACTATCTGAATATCCTGATGGCTTTGTGCTTTGTGGCGTTGGCGTTCTAGCTAAGTTACCAGCTTTTGTGCCCTTCCTGGAATAAGAAGGGACACCGACGAAGGGCTGGCTATTCGCTGCTGTAAATATGCTGTCTTCTGGTTTGTTAGGCCTTCGGAAAGCTATTTGGCCTTCCTGTTTTGATCAGTTTTTCTTCTTATCATTATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATGAATTTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAAAATTGGT ] [+] EMBL C22691 [ CCATCACTTGATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACATCGNCGATACGTGCAAAGATCTTGGCGAGGTCANGAAGGTGTTCCAGTTGGCGCTCCTTTGCAGCAAGAGGCNGCCTTCTGATCGACCGANGATGCACGAGGTCGTGCGTGTCCTGGACTGCCTCGTCTACCCCGANCCGCCCTCAAAGCCGGCACTGNCANCGGCATTGCNACAGTCGTCCACGGTTCCGAGCTATGTCAANGAGTACGTGAGCCTANGAGGCGGCAGCACGCTCTCCTGTGAAAATTCGTCGAGCGCGTC ] [+] EMBL C22692 [ GGCAGCACGCTCTCCTGTGAAAATTCGTCGAGCGCGTCAGATGCGGAGCTCTTCCTGAAGTTCGGCGAGGTGATATCACAGAACACAGAGTAGAGTGACTATCTGAATATCCTGATGGCTTTGTGCTTTGTGGCGTTGGCGTTCTAGCTAAGTTACCAGCTTTTGTGTCCTTCCTGGAATAAGAAGGGACACCGACGAAGGGCTGGCTATTCGCTGCTGTAAATATGCTGTCTTCTGGTTTGTTAGGCCTTCGGAAAGCTATTTGGCCTTCCTGTTTTGATCAGTTTTTCTTCTTATCATTATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATGAATTTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAAAATTGGTTTTGTTGGATAAAAAAAAAAA] consensusID : consensus_7470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [TTCGCTGCTGTAAATATGCCGTCTTCTGGGTTTTTCGTTAGGCCTCTCGGAAAAGCCTATTTTGGCCCTTCCCCTGTTTTGATCCACGTGTTTTGCTTGCTTATGCATTATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATTGAATTTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAAAATTGGTTTTGTTGGAAAAAAAAAA] [+] EMBL BI805997 [TTCGCTGCTGTAAATATGCCGTCTTCTGGGTTTTTCGTTAGGCCTCTCGGAAAAGCCTATTTTGGCCCTTCCCCTGTTTTGATCCACGTGTTTTGCTTGCTTATGCATTATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATTGAATTTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAAAATTGGTTTTGTTGGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7470#0 TTTTTCACGATTTTCACCGGACAGCTTCTTGGGTAATCCTGGACTCTGTGGCTATTGGCT 60 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 TGGTTCTTCGTGCTACTCCACCAGTCATGTGCAGAGATCCTCTGTCTCAAGGTCTGCAAT 120 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 TCTTGGGATTGCTGTAGCTGGGCTTGTTATCCTGCTGATGATCCTAGCTGCTGCTTGCTG 180 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 GCCACACTGGGCACAAGTTCCCAAAGATGTGTCTTTATGTAAACCAGATATCCATGCACT 240 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 ACCATCAAGTAATGTTCCTCCAAAGCTTGTAATCCTTCACATGAACATGGCATTCCTTGT 300 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 GTACGAAGATATAATGAGGATGACTGAAAATTTGAGCGAGAAGTACATTATCGGGTATGG 360 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 GGCATCAAGCACAGTGTACAAATGTGTACTGAAGAACTGCAAGCCGGTTGCAATAAAAAA 420 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 ATTGTATGCTCACTACCCACAGAGCCTGAAGGAATTCGAGACTGAGCTTGAGACTGTTGG 480 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 AAGTATCAAGCACCGGAATCTTGTCAGCCTTCAAGGGTATTCCCTATCACCTGCTGGGAA 540 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 TCTTCTCTTCTACGACTACTTGGAAAATGGCAGTCTCTGGGATGTTTTACATGCAGGCTC 600 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 ATCCAAGAAGCAAAAACTAGATTGGGAGGCTAGGCTCCGGATTGCTCTCGGTGCGGCACA 660 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 AGGTCTGGCTTATCTTCATCATGACTGCAACCCACGGATAATTCATAGGGATGTGAAGTC 720 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 GAAGAATATCCTTCTAGACAAGGACTATGAAGCACATCTTGCCGACTTTGGTATTGCCAA 780 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 GAGCTTGTGCACCTCAAAGACACACACATCAACCTATGTGATGGGTACTATAGGCTACAT 840 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 TGACCCTGAGTACGCATGCACATCCCGCCTCAACGAGAAATCGGATGTCTACAGCTATGG 900 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 CATTGTCCTCCTGGAGCTACTTACAGGCAAAAAGCCAGTCGATAATGAGTGCAATCTCCA 960 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 TCACTTGATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACAT 1020 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 CGCCGATACGTGCAAAGATCTTGGCGAGGTCAAGAAGGTGTTCCAGTTGGCGCTCCTTTG 1080 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 CAGCAAGAGGCAGCCTTCTGATCGACCGACGATGCACGAGGTCGTGCGTGTCCTGGACTG 1140 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 CCTCGTCTACCCCGACCCGCCCTCAAAGCCGGCACTGCCACCGGCATTGCCACAGTCGTC 1200 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 CACGGTTCCGAGCTATGTCAACGAGTACGTGAGCCTACGAGGCGGCAGCACGCTCTCCTG 1260 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 TGAAAATTCGTCGAGCGCGTCAGATGCGGAGCTCTTCCTGAAGTTCGGCGAGGTGATATC 1320 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 ACAGAACACAGAGTAGAGTGACTATCTGAATATCCTGATGGCTTTGTGCTTTGTGGCGTT 1380 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 GGCGTTCTAGCTAAGTTACCAGCTTTTGTGCCCTTCCTGGAATAAGAAGGGACACCGACG 1440 consensus_7470#1 ------------------------------------------------------------ consensus_7470#0 AAGGGCTGGCTATTCGCTGCTGTAAATATGCTGTCTTCTGG----TTTGTTAGGCCT-TC 1495 consensus_7470#1 ------------TTCGCTGCTGTAAATATGCCGTCTTCTGGGTTTTTCGTTAGGCCTCTC 48 ******************* ********* ** ********* ** consensus_7470#0 GGAAAG--CTATTT-GGCCTT---CCTGTTTTGATCA----GTTTTTCTT-CTTAT-CAT 1543 consensus_7470#1 GGAAAAGCCTATTTTGGCCCTTCCCCTGTTTTGATCCACGTGTTTTGCTTGCTTATGCAT 108 ***** ****** **** * ************ ***** *** ***** *** consensus_7470#0 TATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTAT-GAAT 1602 consensus_7470#1 TATTAGTTAGTGGGGTTTGGATGAGGTGAACTGTATTAAGGCCTCCTGGGAGTATTGAAT 168 ******************************************************* **** consensus_7470#0 TTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAA 1662 consensus_7470#1 TTTGTAAGCACGGGTCAGTTAAAAATATCGCAGTGATCGGGAAAAATCCGCCTCTTATAA 228 ************************************************************ consensus_7470#0 AATTGGTTTTGTTGGATAAAAAAAAAAA 1690 consensus_7470#1 AATTGGTTTTGTTGGAAAAAAAAAA--- 253 **************** ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||