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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1248 fasta sequence
[CCTCGTCCATTCCATTCGGCCATTCCCCTCTAGGATGGGATTTCTGCTGGTAGTCTTTGCTTTTCGAGCATCCGTTTCTTGCAAAAGATGGGCGATTAGTTGAAGAATTAATGGTCTTCGAAGACTAATTACTCGTATTAACTCACGAGGGGGAAAGAAAAACATGTCACACGTGTAGGCCACGCTGACAAGAAACTC-GATCTCTTCTTCTATGGTTTAGTTGAAAATTATATATTTTTAGTTTATTTTTTTTTATTAGAGGGTACGTTTTTTCTGTTGATCATGGTAGCAGTAATTGGCTACTAATAATTGCTACCTAAACTATGAAAACGGTAGATACGACGAAATGATGTTGAAAGTTTTTAAGCGATGATAAACAGTGGGTGAAAATATGCTTAATCACTATTCTGTATCTGTAGCAGAACGAGCAAAACCTTCGGAGCGAATGCTGTAGGAAAAAAACTGAAAAAAAAAATCTGGTGTCCAAAGTCCTTGCTAGATAGGCAGTCCAATCAAGGCAGGCCCGGCTAAACCACGGATATTTTCTTCATCTATCACACAGCTTACAGATCCAATGAACCATTCCAAGAATCTCGCTAAGTGATTAGACAGATCGCTTTGGCAGCCTCCGTGATAAAATCCCCTCCAAGTTGGCCAATTTGCCGATTTTTTGTGCCTCATCAAACTGTGCGAGTCTTGACAAGGCAGGTCAGGTAAGGTGACACAA-CCCAACCCCACACAAATGACACAAACAGAGCATCGAAACATCGCCATCTCCAGCTCCGAGAGCCGTAAACAAATCTCGTGGAGCAGAATCCATGCCTTGCCTCGGCGCGTCGACTTGGACGGCACAGACAGAGAAAAAAAAAGAGAGAAAAAGTAGTAGTAAAGCGAAGCAACGATAAGTACTAGACCACTAGAGCAGTAGGAGAAGTCGAGAAGAGGATGATTTTGGCTTTCTTTTTCCGCCGCTTGGTTTGGAGTTTGGTGTGGTAGCGCCTGCCTAGTTGGAACCCTCCCCTTGCAGGCGAGCACCAAGCAGGCAGCCGATCTCGTCGGCGCCACAAGAAAAATCGTTGCTGTCGCTGGTGCGGCTTGCAGGGCCGGGACCGCTCGCCGCCTCAGCCATCATCTCGTGTTGGTTTTTGTTGAAAAAAAAAAGAACTCTCTTTTTGTGTGTGGAGATGCAGAGGTAGGGACCTGCCCAAACTGTCCCAGTGTCCCGATCCGTTTGAAACGAATGAAGAC]
[+] EMBL AK111667 [CCTCGTCCATTCCATTCGGCCATTCCCCTCTAGGATGGGATTTCTGCTGGTAGTCTTTGCTTTTCGAGCATCCGTTTCTTGCAAAAGATGGGCGATTAGTTGAAGAATTAATGGTCTTCGAAGACTAATTACTCGTATTAACTCACGAGGGGGAAAGAAAAACATGTCACACGTGTAGGCCACGCTGACAAGAAACTC GATCTCTTCTTCTATGGTTTAGTTGAAAATTATATATTTTTAGTTTATTTTTTTTTATTAGAGGGTACGTTTTTTCTGTTGATCATGGTAGCAGTAATTGGCTACTAATAATTGCTACCTAAACTATGAAAACGGTAGATACGACGAAATGATGTTGAAAGTTTTTAAGCGATGATAAACAGTGGGTGAAAATATGCTTAATCACTATTCTGTATCTGTAGCAGAACGAGCAAAACCTTCGGAGCGAATGCTGTAGGAAAAAAACTGAAAAAAAAAATCTGGTGTCCAAAGTCCTTGCTAGATAGGCAGTCCAATCAAGGCAGGCCCGGCTAAACCACGGATATTTTCTTCATCTATCACACAGCTTACAGATCCAATGAACCATTCCAAGAATCTCGCTAAGTGATTAGACAGATCGCTTTGGCAGCCTCCGTGATAAAATCCCCTCCAAGTTGGCCAATTTGCCGATTTTTTGTGCCTCATCAAACTGTGCGAGTCTTGACAAGGCAGGTCAGGTAAGGTGACACAA CACAACCCCACACAAATGACACAAACAGAGCATCGAAACATCGCCATCTCCAGCTCCGAGAGCCGTAAACAAATCTCGTGGAGCAGAATCCATGCCTTGCCTCGGCGCGTCGACTTGGACGGCACAGACAGAGAAAAAAAAAGAGAGAAAAAGTAGTAGTAAAGCGAAGCAACGATAAGTACTAGACCACTAGAGCAGTAGGAGAAGTCGAGAAGAGGATGATTTTGGCTTTCTTTTTCCGCCGCTTGGTTTGGAGTTTGGTGTGGTAGCGCCTGCCTAGTTGGAACCCTCCCCTTGCAGGCGAGCACCAAGCAGGCAGCCGATCTCGTCGGCGCCACAAGAAAAATCGTTGCTGTCGCTGGTGCGGCTTGCAGGGCCGGGACCGCTCGCCGCCTCAGCCATCATCTCGTGTTG ]
[-] EMBL CA761675 [ ccCGCTGACAAGGAACTCGGATCTCCTCTTCTATGGGTTAGGTGAAAATAATATATTTTTAGGTTA TTTCTTTTCTTAGAGGGTACGTTTTTTCTGTTGATCATGGTAGCAGTAATTGGCTACTAATAATTGCTACCTAAACTATGAAAACGGTAGATACGACGAAATGATGTTGAAAGTTTTTAAGCGATGATAAACAGTGGGTGAAAATATGCTTAATCCCTATTCTGTATCTGTAGCAGAACGATCAAAACCTTCGGAGCGAATGCTGTAGGAAAAAAACTG AAAAAAAAATCTGGTGTCCAAAGTCCCTGCTAGATAGGCAGTCCAATCAAGGCAGGCCCGGCTAAACCACGGATATTTTCTTCATCTATCACACAGCTTACAGATCCAATGAACCATTCCAAGAATCTCGCTAAGTGATTAGACAGATCGCTTTGGCAGCCTCCGTGATGAAATCCCCTCCAAGTTGGCCAATTTGCCGATTTTTTGTGCCTCATCAAACTGTGCGAGTCTTGACAAGGCAGGTCAGGTAAGGTGACACAA CCCAACCCCACACAGATGACACAAACAGAGCATCGAAACATCGCCATCTCCAGCTTCGAGAGCCGCAAACAAATCTCGTGGAGCAGAATCCATGCCTTGCCTCGGCGCGTCGACTTGGACGGGACAGACAGAGGAAAAAAAAaaaa ]
[-] EMBL CF334663 [ CCCCTCCAAG TGGCCAATTTGCCGATTTTTTGTGCCTCATCAAACTGTGCGAGTCTTGACAAGGCAGGTCAGGTAAGGTGACACAACCCCAACCCC CCCAAAT ACACAAACAGAGCATCGAAACATCGCCATCTCCAGCTCCGAGAGCCGTAAACAAATCTCGTGGAGCAGAATCCATGCCTTGCCTCGGCGCGTCGACTTGGACGGCACAGACAGAGAAAAAAAAAGAGAGAAAAAGTAGTAGTAAAGCGAAGCAACGATAAGTACTAGACCACTAGAGCAGTAGGAGAAGTCGAGAAGAGGATGATTTTGGCTTTCTTTTTCCGCCGCTTGGTTTGGAGTTTGGTGTGGTAGCGCCTGCCTAGTTGGAACCCTCCCCTTGCAGGCGAGCACCAAGCAGGCAGCCGATCTCGTCGGCGCCACAAGAAAAATCGTTGCTGTCGCTGGTGCGGCTTGCGGGGCCGGGACCGCTCGCCGCCTCAGCCATCATCTCGTGTTGGTTTTTGTTGAAAAAAAAAAGAACTCTCTTTTTGTGTGTGGAGATGCAGAGGTAGGGACCTGCCCAAACTGTCCCAGTGTCCCGATCCGTTTGAAACGAATGAAGAC]
consensusID : consensus_7474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAAAAATTTGGGGTCCAAAGTCCTTGCTAAATAGGCAGTCCAATCAAGGGAGGCCCGGCTAAACCACGGATTTTTTTTTCATTTATCACACAGCTTACAGATCCAATGAACCATTCCAAAAATCTCGCTAAGTGATTAAACAAATCGCTTTGGCAGCCTCCGGGATAAAATCCCCTCCAAGTTGGCCAATTTGCCGATTTTTTGGGCCTCATCAAACTGGGCGAGTCTTGACAAGGCAGGTCAGGTAAGGGGACACAACACAACCCCCCACAAATGACACAAACAGAGCATTGAAACATTGCCATTTCCAGCTCCGAAAGCCGTAAACAAATTTCGGGGAGCAAAATCC]
[+] EMBL CF334662 [TTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAAAAATTTGGGGTCCAAAGTCCTTGCTAAATAGGCAGTCCAATCAAGGGAGGCCCGGCTAAACCACGGATTTTTTTTTCATTTATCACACAGCTTACAGATCCAATGAACCATTCCAAAAATCTCGCTAAGTGATTAAACAAATCGCTTTGGCAGCCTCCGGGATAAAATCCCCTCCAAGTTGGCCAATTTGCCGATTTTTTGGGCCTCATCAAACTGGGCGAGTCTTGACAAGGCAGGTCAGGTAAGGGGACACAACACAACCCCCCACAAATGACACAAACAGAGCATTGAAACATTGCCATTTCCAGCTCCGAAAGCCGTAAACAAATTTCGGGGAGCAAAATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7474#0 CCTCGTCCATTCCATTCGGCCATTCCCCTCTAGGATGGGATTTCTGCTGGTAGTCTTTGC 60
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 TTTTCGAGCATCCGTTTCTTGCAAAAGATGGGCGATTAGTTGAAGAATTAATGGTCTTCG 120
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 AAGACTAATTACTCGTATTAACTCACGAGGGGGAAAGAAAAACATGTCACACGTGTAGGC 180
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 CACGCTGACAAGAAACTCGATCTCTTCTTCTATGGTTTAGTTGAAAATTATATATTTTTA 240
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 GTTTATTTTTTTTTATTAGAGGGTACGTTTTTTCTGTTGATCATGGTAGCAGTAATTGGC 300
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 TACTAATAATTGCTACCTAAACTATGAAAACGGTAGATACGACGAAATGATGTTGAAAGT 360
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 TTTTAAGCGATGATAAACAGTGGGTGAAAATATGCTTAATCACTATTCTGTATCTGTAGC 420
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 AGAACGAGCAAAACCTTCGGAGCGAATGCTGTAGGAAAAAAACTGAAAAAAAAAATCTGG 480
consensus_7474#1 -------------TTTTT----TTTTTTTTTTTTTTTTTTTTTTGAAAAAAAAAATTTGG 43
** * * * ************* ***
consensus_7474#0 TGTCCAAAGTCCTTGCTAGATAGGCAGTCCAATCAAGGCAGGCCCGGCTAAACCACGGAT 540
consensus_7474#1 GGTCCAAAGTCCTTGCTAAATAGGCAGTCCAATCAAGGGAGGCCCGGCTAAACCACGGAT 103
***************** ******************* *********************
consensus_7474#0 ATTTTCTTCATCTATCACACAGCTTACAGATCCAATGAACCATTCCAAGAATCTCGCTAA 600
consensus_7474#1 TTTTTTTTCATTTATCACACAGCTTACAGATCCAATGAACCATTCCAAAAATCTCGCTAA 163
**** ***** ************************************ ***********
consensus_7474#0 GTGATTAGACAGATCGCTTTGGCAGCCTCCGTGATAAAATCCCCTCCAAGTTGGCCAATT 660
consensus_7474#1 GTGATTAAACAAATCGCTTTGGCAGCCTCCGGGATAAAATCCCCTCCAAGTTGGCCAATT 223
******* *** ******************* ****************************
consensus_7474#0 TGCCGATTTTTTGTGCCTCATCAAACTGTGCGAGTCTTGACAAGGCAGGTCAGGTAAGGT 720
consensus_7474#1 TGCCGATTTTTTGGGCCTCATCAAACTGGGCGAGTCTTGACAAGGCAGGTCAGGTAAGGG 283
************* ************** ******************************
consensus_7474#0 GACACAACCCAACCCCACACAAATGACACAAACAGAGCATCGAAACATCGCCATCTCCAG 780
consensus_7474#1 GACACAACACAACCCCCCACAAATGACACAAACAGAGCATTGAAACATTGCCATTTCCAG 343
******** ******* *********************** ******* ***** *****
consensus_7474#0 CTCCGAGAGCCGTAAACAAATCTCGTGGAGCAGAATCCATGCCTTGCCTCGGCGCGTCGA 840
consensus_7474#1 CTCCGAAAGCCGTAAACAAATTTCGGGGAGCAAAATCC---------------------- 381
****** ************** *** ****** *****
consensus_7474#0 CTTGGACGGCACAGACAGAGAAAAAAAAAGAGAGAAAAAGTAGTAGTAAAGCGAAGCAAC 900
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 GATAAGTACTAGACCACTAGAGCAGTAGGAGAAGTCGAGAAGAGGATGATTTTGGCTTTC 960
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 TTTTTCCGCCGCTTGGTTTGGAGTTTGGTGTGGTAGCGCCTGCCTAGTTGGAACCCTCCC 1020
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 CTTGCAGGCGAGCACCAAGCAGGCAGCCGATCTCGTCGGCGCCACAAGAAAAATCGTTGC 1080
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 TGTCGCTGGTGCGGCTTGCAGGGCCGGGACCGCTCGCCGCCTCAGCCATCATCTCGTGTT 1140
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 GGTTTTTGTTGAAAAAAAAAAGAACTCTCTTTTTGTGTGTGGAGATGCAGAGGTAGGGAC 1200
consensus_7474#1 ------------------------------------------------------------
consensus_7474#0 CTGCCCAAACTGTCCCAGTGTCCCGATCCGTTTGAAACGAATGAAGAC 1248
consensus_7474#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||