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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 862 fasta sequence
[TCCTTTTTTTTTTTTTTTTTGAAGAGAAAAGGAATACGTTCTCCCTCCTCAAAGGCTCAAACCAGCAAAGATCAACACAAACTAATTTTTTTTTACAGATAGCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGGTACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACAAAAAAGAAAAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTATAAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCGCTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTGTAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGATGTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCATGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCACATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCTGCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATCAGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGACTCTACAACATGAGGTGATGAGGATG]
[+] EMBL CB657553 [TCCTTTTTTTTTTTTTTTTTGAAGAGAAAAGGAATACGTTCTCCCTCCTCAAAGGCTCAAACCAGCAAAGATCAACACAAACTAATTTTTTTTTACAGATAGCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGGGACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACAAAAAAGAAAAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTATAAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCGCTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTGTAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGATGTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCATGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCACATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCTGCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATCAGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTAT ]
[+] EMBL CB640107 [ TAATTTTTTTTTACAGATAGCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACACTATTTATACACCTCTTAACTCCTCTTCTCGCTCACGGTACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCATCAAAAAAGAACAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAAATTTCGACCGACTTCAACAGCGCATCAGAATTTCAAAGATTCTTCAGGAGGTATAAAAAAAGGGGATGCTCAGAATTTCCACCAGAGGAAGCCCTTATTCCAACCACGGC ]
[+] EMBL CB653834 [ GATACCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGGTACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACAAAAAAGAAGAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTATAAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCGCTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTGTAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGATGTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCATGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCACATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCTGCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATCAGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGACTCTACAACATGAGGTGATGAGGATG]
consensusID : consensus_7488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence
[CTTTTTTTTTGATCAACACAAACTAATTTTTTTTTTACAGATAGCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGGTACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACAAAAAAGAAGAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTATAAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCGCTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTGTAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGATGTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCATGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCACATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCTGCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATCAGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGA]
[+] EMBL CB633910 [CTTTTTTTTTGATCAACACAAACTAATTTTTTTTTTACAGATAGCAATGCAATCCAATGATCCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGGTACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACAAAAAAGAAGAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTACAGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTATAAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCGCTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTGTAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGATGTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCATGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCACATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCTGCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATCAGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7488#0 TCCTTTTTTTTTTTTTTTTTGAAGAGAAAAGGAATACGTTCTCCCTCCTCAAAGGCTCAA 60
consensus_7488#1 -----------------------------------------------------------C 1
consensus_7488#0 ACCAGCAAAGATCAACACAAACTAATTTTTTTTT-ACAGATAGCAATGCAATCCAATGAT 119
consensus_7488#1 TTTTTTTTTGATCAACACAAACTAATTTTTTTTTTACAGATAGCAATGCAATCCAATGAT 61
************************* *************************
consensus_7488#0 CCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGG 179
consensus_7488#1 CCATCACCCCCTAGGCTACACGCTATTTATACACCTCTTCACTCCTCTTCTCGCTCACGG 121
************************************************************
consensus_7488#0 TACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACA 239
consensus_7488#1 TACAGAGTTACAAGCCACTGACAAAACCGACAAGCCATCTTACCTGCTACAGGACCAACA 181
************************************************************
consensus_7488#0 AAAAAGAAAAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTAC 299
consensus_7488#1 AAAAAGAAGAAGCAGGGTATACATATATGGCGTGCAAATCAGACACTTCGGTGGAGTTAC 241
******** ***************************************************
consensus_7488#0 AGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTAT 359
consensus_7488#1 AGATAGATTTCGACCGACTTCAGCAGCGCATCAGAATTTCAGAGATTCTTCAGGAGGTAT 301
************************************************************
consensus_7488#0 AAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCG 419
consensus_7488#1 AAGAAAAGGGGATGCTCAGAATTTCCAGCAGAGGAAGCCCTTATTCCAGCCACGGCGCCG 361
************************************************************
consensus_7488#0 CTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTG 479
consensus_7488#1 CTTGTTTCGCCTCCGCTCCGCTCTCGCCATCCTCACCGGGCTGCTGTTCCAATCCCACTG 421
************************************************************
consensus_7488#0 TAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGAT 539
consensus_7488#1 TAACACTGGAAATGCGAAGGACCGGGTGCTTGTCGTGCTACTATCTGACCGGATGGAGAT 481
************************************************************
consensus_7488#0 GTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCA 599
consensus_7488#1 GTTGCCAATGTGACCAGAGGTCGACACTGGGTTGCACATGATGCTAGGCCCAAGAGAGCA 541
************************************************************
consensus_7488#0 TGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCAC 659
consensus_7488#1 TGGCTCAAGGGGATACCCATTGCCAATCAGAGATTTTCCCTTTGCATTATTATCAGGCAC 601
************************************************************
consensus_7488#0 ATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCT 719
consensus_7488#1 ATCTAGTTCATCCACATGAGTGGAATCCTTTTGCGCATCGGTAGAACTCGTGCTAATTCT 661
************************************************************
consensus_7488#0 GCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATC 779
consensus_7488#1 GCCATCGTTTGTTGCGTCTGCGCAGCTCTCTGAATCTGTCTGGTTGAAATCATGCACATC 721
************************************************************
consensus_7488#0 AGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGACTC 839
consensus_7488#1 AGTAGCACCATCGTTGTCAGAGTTCTTGTTGTTCATCTGCCTATTTGCATCACTGGA--- 778
*********************************************************
consensus_7488#0 TACAACATGAGGTGATGAGGATG 862
consensus_7488#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||