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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1055 fasta sequence
[GTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCCGCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCCGCGAACAGCATCCTGTACAACCGCGGGGTGTACCCGGAGGAGAGCTTCACCAAGGTGAAGAAGTACGGCCTCACGATGCTGCTGACGCAGGACGAAGGGGTGAAGACCTTCATCGCCAACCTCAACACCCAGCTCTCAGAGTGGCTGGAGGCCGGGAAGCTGCAGAGGATCGTGCTGGTGATCATGAGCAAGGCCACCTCCGAGGTGCTGGAGCGGTGGAACTTCAGCATCCAGACCGACCCGGAGGTGGTCGACAAGGGTGTCATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATT-CAC-AAGGTGGACACGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAAGTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCACGATTTCTTCAAAAAAAA]
[+] EMBL AK111976 [GTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCCGCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCCGCGAACAGCATCCTGTACAACCGCGGGGTGTACCCGGAGGAGAGCTTCACCAAGGTGAAGAAGTACGGCCTCACGATGCTGCTGACGCAGGACGAAGGGGTGAAGACCTTCATCGCCAACCTCAACACCCAGCTCTCAGAGTGGCTGGAGGCCGGGAAGCTGCAGAGGATCGTGCTGGTGATCATGAGCAAGGCCACCTCCGAGGTGCTGGAGCGGTGGAACTTCAGCATCCAGACCGACCCGGAGGTGGTCGACAAGGGTGTCATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATT CAC AAGGTGGACACGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCC ]
[+] EMBL AU173518 [ AGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATT CAC AAGGTGGACACGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAAGTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCACGATTTCTTCAAAAAAAA]
[+] EMBL AU030937 [ CGACACCAAGATTCCACAAAGGT GACACGCTCGTCTCNTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTGGAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTAGCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGAACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGACTGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAAGTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCAaaaaa ]
consensusID : consensus_7494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[NCCAACGNCAAACAACGCTNCCAAATTTCCCAAGCGCCGCAGCCCGCAGCCGATCCGCTCCACACTAGCCGTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGTGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCGCGAACAAGCATCCTGTACAACCGCGGGGTGTACCCGGAAGAAGAGCTTTNAACAATGGTGAAGAATACGGNCTCACGATGCTGCTTGACGCAGGACGAAGGGGTGAAAGACCTTNAATCGCCAACTTCAACAACCCAGCTCTTAAGAGTGGNTTGAAGGCCTGGGAAA]
[+] EMBL AU032090 [NCCAACGNCAAACAACGCTNCCAAATTTCCCAAGCGCCGCAGCCCGCAGCCGATCCGCTCCACACTAGCCGTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCATCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGTGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGGCTACGCGCGAACAAGCATCCTGTACAACCGCGGGGTGTACCCGGAAGAAGAGCTTTNAACAATGGTGAAGAATACGGNCTCACGATGCTGCTTGACGCAGGACGAAGGGGTGAAAGACCTTNAATCGCCAACTTCAACAACCCAGCTCTTAAGAGTGGNTTGAAGGCCTGGGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7494#0 ------------------------------------------------------------
consensus_7494#1 NCCAACGNCAAACAACGCTNCCAAATTTCCCAAGCGCCGCAGCCCGCAGCCGATCCGCTC 60
consensus_7494#0 ----------GTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCAT 50
consensus_7494#1 CACACTAGCCGTTGCCTTTGCCCGGCTTTTCCCCCCCTTTCCTCTTTCCTCTCCCCCCAT 120
**************************************************
consensus_7494#0 CCGCCGCCGCCGCCGCCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGA 110
consensus_7494#1 CCG------------CCGCCGCACGGGAGGCAAGAGGAGGAGTTAAGAAGGTGAGGCGGA 168
*** *********************************************
consensus_7494#0 TCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGC 170
consensus_7494#1 TCAGGAGATGGCGTCGAGGACGGTGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGC 228
*********************** ************************************
consensus_7494#0 CATCGTCAGCGAGTTCTTCGGCTACGCCGCGAACA-GCATCCTGTACAACCGCGGGGTGT 229
consensus_7494#1 CATCGTCAGCGAGTTCTTCGGCTACGC-GCGAACAAGCATCCTGTACAACCGCGGGGTGT 287
*************************** ******* ************************
consensus_7494#0 ACCCGGAGGA-GAGCTTCA--CCAAGGTGAAGAAGTACGGCCTCACGATGCTGCT-GACG 285
consensus_7494#1 ACCCGGAAGAAGAGCTTTNAACAATGGTGAAGAA-TACGGNCTCACGATGCTGCTTGACG 346
******* ** ****** * * ********* ***** ************** ****
consensus_7494#0 CAGGACGAAGGGGTGAA-GACCTTCA-TCGCCAACCTCAACA-CCCAGCTCTCA-GAGTG 341
consensus_7494#1 CAGGACGAAGGGGTGAAAGACCTTNAATCGCCAACTTCAACAACCCAGCTCTTAAGAGTG 406
***************** ****** * ******** ****** ********* * *****
consensus_7494#0 GCT-GGAGGCCGGGAAGCTGCAGAGGATCGTGCTGGTGATCATGAGCAAGGCCACCTCCG 400
consensus_7494#1 GNTTGAAGGCCTGGGAAA------------------------------------------ 424
* * * ***** ** *
consensus_7494#0 AGGTGCTGGAGCGGTGGAACTTCAGCATCCAGACCGACCCGGAGGTGGTCGACAAGGGTG 460
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TCATCAAGGAGAAGAGCGACAAGGAGATCATGAGGGAGATCCAGGCCATCATGCGCCAGG 520
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATGCATATTCGACGTGCTGG 580
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 CGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCA 640
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TCGAGAATCCACAGATGGTGAAGCTGCATTCCTTCGACACCAAGATTCACAAGGTGGACA 700
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 CGCTCGTCTCCTACAAGGTCGACGAGTGGGACGAGGAGTAGAAGCCGCCGGTGGAGGTTG 760
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 GAGCCATGAGGAGGAGACCCCCTTGCTAGTTTATTGCTGCTAGCTTATTTAGCTAGCTTA 820
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 GCTTGCTAGGCGTGATGCTTGTGTGAATCGTTCGTTCATTCACGCCCTAGCCCTATCGGA 880
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 ACTCGTGTGCTCTGGGAGAATCCCTTTTCTTGTTCTTTACCGCATTTTGGGAGAATCGAC 940
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TGTGTATCGCTGCTTCACCATGATTTTTTTTTCCTCAGCCTTTGAAATCCTGGGTTGAAA 1000
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 GTACCACTGGAGTTGAATGCATCGTGATCGTGTGCCACGATTTCTTCAAAAAAAA 1055
consensus_7494#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||