cluster # 7498

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Oryza sativa
cluster # 7498 cluster # 7498 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7498#0 length = 1348 sequences # 3

consensus_7498#1 length = 442 sequences # 1

consensusID : consensus_7498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1348
fasta sequence

                              [TTTAGGCCCTAATCAACGCTTTGCTCTGCACACCTCGCAAGAGATCAGAGCCCCTGAAAGCTAGAAGAGGAGATAGAGGATAACCCACACGCCATGGGGAGAGCGCCGTGCTGCGACAAGGCGAGCGTGAAGAAGGGGCCATGGTCACCGGAGGAGGACGCGAAGCTCAAATCCTACATCGAGCAGAACGGCACCGGCGGCAACTGGATCGCCCTGCCCCAGAAGATCGGTTTGAAAAGGTGCGGCAAGAGCTGCCGCCTCCGGTGGCTGAACTACCTCCGGCCGAACATCAAGCACGGCGGGTTCTCGGAGGAGGAAGAC-AGGATCATCCTCAGCCTCTACATCAGCATAGGAAGCAGGTGGTCGATAATAGCAGCGCAGCTGCCGGGGCGGACGGACAATGACATCAAGAACTATTGGAACACGAGGCTCAAGAAGAAGCTCTTTGGCAAGCAGTCGCGCAAGGATCAGAGGCAGCAGCAGCACCTGGCGCGCCAGGCGGCAGCAGCTGCCAGCGACTTGCAGATCAAACAAGAAGCGAGCAGGGGTGCAAACGAAGCCGATGGCTTGGCTGCCGGTGCCAATTACACTTGGCATCACCACCACGCCATGGCCGTGCCTGTGCACCCGATGTCGGCACCAATGGTGGTGGAAGGAGGCCGTGTGGGAGACGATGTCGATGAGTCGATCCGGAAGCTTCTGTTCAAGCTCGGAGGGAACCCATTCGCGGCCTCGCCGGCACCGCCATGCATACCTCCACCACCAATGTACGAGGAAGCCCCAAGCTTCGTGCCACCATTGGCGCACGGCGTGCCGCTCAACGAAGGCGGCATGCAGTGCTCCAGCGTGCTGCCGGCGCTGGAGCTGGACGAGAACTTCCACTTCAACCATGTCAAGCTGGACGGGCTCGAGTGCCTCTTCGGGATGGGAGATCACCAAAACATGAGATGGAATGAGGTGAGCCCGTTGGTTTGCCCTAATAACGCTGTGGCGTCCAGCTCCCAAGGGATGCAGCAGTACTGCCTAGTTGAAGAACCAGCTGACCTCGGGATGCAGTAGCAATTTGGTTGTGTTTCCGTGTACATGCATGATTGTGTGGTGTAAATCTGTAGCATTCATGGGGAAATTAATGGGGAAAGATGAGATCAAACTTCTTTGAACTAAGAGCAATAAGGTCGAGCTCTCACCACTCCTAGATGAGAGATAGGTGCATGCCTGATTTTCCAGGTGTCTTCATGTGAGTCTAGTCTTTAAATGGTATTTTCCTCTACTCTCTTACTGCCCTACAGAAACATTTTACATTAGACTGTACGTGTTGCATTTATCTGTCGCTTAATTTGGTGTGTTT]

[+] EMBL AK112018             [TTTAGGCCCTAATCAACGCTTTGCTCTGCACACCTCGCAAGAGATCAGAGCCCCTGAAAGCTAGAAGAGGAGATAGAGGATAACCCACACGCCATGGGGAGAGCGCCGTGCTGCGACAAGGCGAGCGTGAAGAAGGGGCCATGGTCACCGGAGGAGGACGCGAAGCTCAAATCCTACATCGAGCAGAACGGCACCGGCGGCAACTGGATCGCCCTGCCCCAGAAGATCGGTTTGAAAAGGTGCGGCAAGAGCTGCCGCCTCCGGTGGCTGAACTACCTCCGGCCGAACATCAAGCACGGCGGGTTCTCGGAGGAGGAAGAC AGGATCATCCTCAGCCTCTACATCAGCATAGGAAGCAGGTGGTCGATAATAGCAGCGCAGCTGCCGGGGCGGACGGACAATGACATCAAGAACTATTGGAACACGAGGCTCAAGAAGAAGCTCTTTGGCAAGCAGTCGCGCAAGGATCAGAGGCAGCAGCAGCACCTGGCGCGCCAGGCGGCAGCAGCTGCCAGCGACTTGCAGATCAAACAAGAAGCGAGCAGGGGTGCAAACGAAGCCGATGGCTTGGCTGCCGGTGCCAATTACACTTGGCATCACCACCACGCCATGGCCGTGCCTGTGCACCCGATGTCGGCACCAATGGTGGTGGAAGGAGGCCGTGTGGGAGACGATGTCGATGAGTCGATCCGGAAGCTTCTGTTCAAGCTCGGAGGGAACCCATTCGCGGCCTCGCCGGCACCGCCATGCATACCTCCACCACCAATGTACGAGGAAGCCCCAAGCTTCGTGCCACCATTGGCGCACGGCGTGCCGCTCAACGAAGGCGGCATGCAGTGCTCCAGCGTGCTGCCGGCGCTGGAGCTGGACGAGAACTTCCACTTCAACCATGTCAAGCTGGACGGGCTCGAGTGCCTCTTCGGGATGGGAGATCACCAAAACATGAGATGGAATGAGGTGAGCCCGTTGGTTTGCCCTAATAACGCTGTGGCGTCCAGCTCCCAAGGGATGCAGCAGTACTGCCTAGTTGAAGAACCAGCTGACCTCGGGATGCAGTAGCAATTTGGTTGTGTTTCCGTGTACATGCATGATTGTGTGGTGTAAATCTGTAGCATTCATGGGGAAATTAATGGGGAAAGATGAGATCAAACTTCTTTGAACTAAGAGCAATAAGGTCGAGCTCTCACCACTCCTAGATGAGAGATAGGTGCATGCCTGATTTTCCAGGTGTCTTCATGTGAGTCTAGTCTTTAAATGGTATTTTCCTCTACTCTCTTACTGCCCTACAGAAACATTTTACATTAGACTGTACGTGTTGCATTTATCTGTCGCTTAATTTGGTGTGTTT]
[+] EMBL OSR24431A            [                                                                                                             GCTGCGACAAGGCGAGCGTGAAGAAGGGGCCATGGTCACCGGAGGAGGACGCGAAG TCAAATCCTACATCGAGCAGAACGGCACCGGCGGCAACTGGATCGCCCTGCCCCAGAAGATCGGTTTGAAAAGGTGCGGCAAGAGCTGCCGCCTCCGGTGGCTGAACTACCTCCGGCCGAACATCAAGCACGGCGGGTTCTNGGAGGAGGAAGACAAGGATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA757874             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGCCTCTTCGGGATGGGAGATCACCAAAACATGAGATGGAATGAGGTGAGCCCGTTGGTTTGCCCTAATAACGCTGTGGCGTCCAGCTCCCAAGGGATGCAGCAGTACTGCCTAATTGAAGAACCAGCTGACCTCGGGATGCAGTAGCAATTTGGTTGTGTTTCCGTGTACATGCATGATTGTGTGGTGTAAATCTGTAGCATTCATGGGGAAATTAAAGGGGAAAGATGAGATCAAGCTTCTTTGAACTAAGAGCAATAAGGTCGAGCTCTCACCACTCCTAGATGAGAGATAGGTGCATGCCTGATTTTCCAGGTGTCTTCATGTGAGTCTAGTCTTTAAATGGTATTTTCCTCTACTCTCTTACTGCCCTACAGAAACATTTTACATTAaaaaaaaa                                    ]




>consensus_7498#0
TTTAGGCCCTAATCAACGCTTTGCTCTGCACACCTCGCAAGAGATCAGAGCCCCTGAAAG
CTAGAAGAGGAGATAGAGGATAACCCACACGCCATGGGGAGAGCGCCGTGCTGCGACAAG
GCGAGCGTGAAGAAGGGGCCATGGTCACCGGAGGAGGACGCGAAGCTCAAATCCTACATC
GAGCAGAACGGCACCGGCGGCAACTGGATCGCCCTGCCCCAGAAGATCGGTTTGAAAAGG
TGCGGCAAGAGCTGCCGCCTCCGGTGGCTGAACTACCTCCGGCCGAACATCAAGCACGGC
GGGTTCTCGGAGGAGGAAGACAGGATCATCCTCAGCCTCTACATCAGCATAGGAAGCAGG
TGGTCGATAATAGCAGCGCAGCTGCCGGGGCGGACGGACAATGACATCAAGAACTATTGG
AACACGAGGCTCAAGAAGAAGCTCTTTGGCAAGCAGTCGCGCAAGGATCAGAGGCAGCAG
CAGCACCTGGCGCGCCAGGCGGCAGCAGCTGCCAGCGACTTGCAGATCAAACAAGAAGCG
AGCAGGGGTGCAAACGAAGCCGATGGCTTGGCTGCCGGTGCCAATTACACTTGGCATCAC
CACCACGCCATGGCCGTGCCTGTGCACCCGATGTCGGCACCAATGGTGGTGGAAGGAGGC
CGTGTGGGAGACGATGTCGATGAGTCGATCCGGAAGCTTCTGTTCAAGCTCGGAGGGAAC
CCATTCGCGGCCTCGCCGGCACCGCCATGCATACCTCCACCACCAATGTACGAGGAAGCC
CCAAGCTTCGTGCCACCATTGGCGCACGGCGTGCCGCTCAACGAAGGCGGCATGCAGTGC
TCCAGCGTGCTGCCGGCGCTGGAGCTGGACGAGAACTTCCACTTCAACCATGTCAAGCTG
GACGGGCTCGAGTGCCTCTTCGGGATGGGAGATCACCAAAACATGAGATGGAATGAGGTG
AGCCCGTTGGTTTGCCCTAATAACGCTGTGGCGTCCAGCTCCCAAGGGATGCAGCAGTAC
TGCCTAGTTGAAGAACCAGCTGACCTCGGGATGCAGTAGCAATTTGGTTGTGTTTCCGTG
TACATGCATGATTGTGTGGTGTAAATCTGTAGCATTCATGGGGAAATTAATGGGGAAAGA
TGAGATCAAACTTCTTTGAACTAAGAGCAATAAGGTCGAGCTCTCACCACTCCTAGATGA
GAGATAGGTGCATGCCTGATTTTCCAGGTGTCTTCATGTGAGTCTAGTCTTTAAATGGTA
TTTTCCTCTACTCTCTTACTGCCCTACAGAAACATTTTACATTAGACTGTACGTGTTGCA
TTTATCTGTCGCTTAATTTGGTGTGTTT

consensusID : consensus_7498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [TGNCCGTGCCTGTGCACCCGATGTCGGCACCCAATGTACGAGGAANCCCCAAAGCTTCGTGCCACCATTGGCGCACGGCGTGCCGCTCAACGAAGGCGGCATGCAGTGCTCCAGCGTGCTGCCGGCGCTGGAGCTGGACGAGAACTTCCACTTCAACCATGTCAAGCTGGACGGGCTCGAGTGCCTCTTCGGGATGGGAGATCACCAAAACATGAGATGGAATGAGGTGAGCCCGTTGGTTTGCCCTAATAACGCTGTGGCGTCCAGCTCCCAAGGGATGCAGCAGTACTGCCTAGTTGAAGAACCAGCTGACCTCGGGATGCAGTAGCAATTTGGTTGTGTTTCCGTGTACATGCATGATTGTGTGGTGTAAATCTGTAGCATTCATGGGGAAATTAATGGGGAAAGATGAGATCAAACTTCTTTGAACTAAAAAAAAAAA]

[+] EMBL AU031895             [TGNCCGTGCCTGTGCACCCGATGTCGGCACCCAATGTACGAGGAANCCCCAAAGCTTCGTGCCACCATTGGCGCACGGCGTGCCGCTCAACGAAGGCGGCATGCAGTGCTCCAGCGTGCTGCCGGCGCTGGAGCTGGACGAGAACTTCCACTTCAACCATGTCAAGCTGGACGGGCTCGAGTGCCTCTTCGGGATGGGAGATCACCAAAACATGAGATGGAATGAGGTGAGCCCGTTGGTTTGCCCTAATAACGCTGTGGCGTCCAGCTCCCAAGGGATGCAGCAGTACTGCCTAGTTGAAGAACCAGCTGACCTCGGGATGCAGTAGCAATTTGGTTGTGTTTCCGTGTACATGCATGATTGTGTGGTGTAAATCTGTAGCATTCATGGGGAAATTAATGGGGAAAGATGAGATCAAACTTCTTTGAACTAAAAAAAAAAA]




>consensus_7498#1
TGNCCGTGCCTGTGCACCCGATGTCGGCACCCAATGTACGAGGAANCCCCAAAGCTTCGT
GCCACCATTGGCGCACGGCGTGCCGCTCAACGAAGGCGGCATGCAGTGCTCCAGCGTGCT
GCCGGCGCTGGAGCTGGACGAGAACTTCCACTTCAACCATGTCAAGCTGGACGGGCTCGA
GTGCCTCTTCGGGATGGGAGATCACCAAAACATGAGATGGAATGAGGTGAGCCCGTTGGT
TTGCCCTAATAACGCTGTGGCGTCCAGCTCCCAAGGGATGCAGCAGTACTGCCTAGTTGA
AGAACCAGCTGACCTCGGGATGCAGTAGCAATTTGGTTGTGTTTCCGTGTACATGCATGA
TTGTGTGGTGTAAATCTGTAGCATTCATGGGGAAATTAATGGGGAAAGATGAGATCAAAC
TTCTTTGAACTAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7498#0      TTTAGGCCCTAATCAACGCTTTGCTCTGCACACCTCGCAAGAGATCAGAGCCCCTGAAAG 60
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      CTAGAAGAGGAGATAGAGGATAACCCACACGCCATGGGGAGAGCGCCGTGCTGCGACAAG 120
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      GCGAGCGTGAAGAAGGGGCCATGGTCACCGGAGGAGGACGCGAAGCTCAAATCCTACATC 180
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      GAGCAGAACGGCACCGGCGGCAACTGGATCGCCCTGCCCCAGAAGATCGGTTTGAAAAGG 240
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      TGCGGCAAGAGCTGCCGCCTCCGGTGGCTGAACTACCTCCGGCCGAACATCAAGCACGGC 300
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      GGGTTCTCGGAGGAGGAAGACAGGATCATCCTCAGCCTCTACATCAGCATAGGAAGCAGG 360
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      TGGTCGATAATAGCAGCGCAGCTGCCGGGGCGGACGGACAATGACATCAAGAACTATTGG 420
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      AACACGAGGCTCAAGAAGAAGCTCTTTGGCAAGCAGTCGCGCAAGGATCAGAGGCAGCAG 480
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      CAGCACCTGGCGCGCCAGGCGGCAGCAGCTGCCAGCGACTTGCAGATCAAACAAGAAGCG 540
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      AGCAGGGGTGCAAACGAAGCCGATGGCTTGGCTGCCGGTGCCAATTACACTTGGCATCAC 600
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      CACCACGCCATGGCCGTGCCTGTGCACCCGATGTCGGCACCAATGGTGGTGGAAGGAGGC 660
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      CGTGTGGGAGACGATGTCGATGAGTCGATCCGGAAGCTTCTGTTCAAGCTCGGAGGGAAC 720
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      CCATTCGCGGCCTCGCCGGCACCGCCATGCATACCTCCACCACCAATGTACGAGGAAGCC 780
consensus_7498#1      -------TGNCCGTGCCTGTGCACCCG---ATGTCGGCACC--CAATGTACGAGGAANCC 48
                              * **  *** *  *  **    **  *  ****  ************** **

consensus_7498#0      CCAA-GCTTCGTGCCACCATTGGCGCACGGCGTGCCGCTCAACGAAGGCGGCATGCAGTG 839
consensus_7498#1      CCAAAGCTTCGTGCCACCATTGGCGCACGGCGTGCCGCTCAACGAAGGCGGCATGCAGTG 108
                      **** *******************************************************

consensus_7498#0      CTCCAGCGTGCTGCCGGCGCTGGAGCTGGACGAGAACTTCCACTTCAACCATGTCAAGCT 899
consensus_7498#1      CTCCAGCGTGCTGCCGGCGCTGGAGCTGGACGAGAACTTCCACTTCAACCATGTCAAGCT 168
                      ************************************************************

consensus_7498#0      GGACGGGCTCGAGTGCCTCTTCGGGATGGGAGATCACCAAAACATGAGATGGAATGAGGT 959
consensus_7498#1      GGACGGGCTCGAGTGCCTCTTCGGGATGGGAGATCACCAAAACATGAGATGGAATGAGGT 228
                      ************************************************************

consensus_7498#0      GAGCCCGTTGGTTTGCCCTAATAACGCTGTGGCGTCCAGCTCCCAAGGGATGCAGCAGTA 1019
consensus_7498#1      GAGCCCGTTGGTTTGCCCTAATAACGCTGTGGCGTCCAGCTCCCAAGGGATGCAGCAGTA 288
                      ************************************************************

consensus_7498#0      CTGCCTAGTTGAAGAACCAGCTGACCTCGGGATGCAGTAGCAATTTGGTTGTGTTTCCGT 1079
consensus_7498#1      CTGCCTAGTTGAAGAACCAGCTGACCTCGGGATGCAGTAGCAATTTGGTTGTGTTTCCGT 348
                      ************************************************************

consensus_7498#0      GTACATGCATGATTGTGTGGTGTAAATCTGTAGCATTCATGGGGAAATTAATGGGGAAAG 1139
consensus_7498#1      GTACATGCATGATTGTGTGGTGTAAATCTGTAGCATTCATGGGGAAATTAATGGGGAAAG 408
                      ************************************************************

consensus_7498#0      ATGAGATCAAACTTCTTTGAACTAAGAGCAATAAGGTCGAGCTCTCACCACTCCTAGATG 1199
consensus_7498#1      ATGAGATCAAACTTCTTTGAACTAAAAAAAAAAA-------------------------- 442
                      ************************* *  ** **                          

consensus_7498#0      AGAGATAGGTGCATGCCTGATTTTCCAGGTGTCTTCATGTGAGTCTAGTCTTTAAATGGT 1259
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      ATTTTCCTCTACTCTCTTACTGCCCTACAGAAACATTTTACATTAGACTGTACGTGTTGC 1319
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      ATTTATCTGTCGCTTAATTTGGTGTGTTT 1348
consensus_7498#1      -----------------------------