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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1093 fasta sequence
[GCTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGATAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCCTTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAACTGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTTGGTTGTTTTCAGCTTTGTAATGATTTATAGAAAAATGGGAGAATAACTCCTAA]
[+] EMBL AK060474 [GCTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGATAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCCTTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAACTGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTT ]
[+] EMBL AK073762 [ CTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGATAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCCTTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAACTGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTTGGTTGTTTTCAGCTTTGTAATGATTTATAGAAAAATGGGAGAATAACTCCTAA]
consensusID : consensus_7507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence
[TGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTT]
[+] EMBL AK119213 [TGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTGCCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGCTGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCTCCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGTCGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGGTTGGATCCCAAGTCGTATATTCAAAATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGACATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATATGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGATCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTATGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCACTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTATAATGAATGCCAACTTTTTTT]
[+] EMBL AA751305 [ AGCCTCTTAGCGATCGTGTTCTTATCAAGGTCGCTGAAGCTGAAGATAAANCTCCTGGTGGCCTATTGCTTACTGAAACAACAAAGGAG ABCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGAGGAAGGCAAGAGGATTCCATTBYCSCTCTCTGCAGGCAGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7507#0 GCTGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTG 60
consensus_7507#1 --TGCTGCTGCTGCTCTCTCCGCGCTGCGCTTCCGCTGCTCTAGGGTTTATCTCCTGCTG 58
**********************************************************
consensus_7507#0 CCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGC 120
consensus_7507#1 CCGCTCGGATTTCGCGGCGAGCAATCCACCGGAGATGGCGCCCGTGCAGTTCTCCGCCGC 118
************************************************************
consensus_7507#0 TGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCT 180
consensus_7507#1 TGGAGTTGGCGCGGTGGCCTTCGCTACGAAGGGGATGGCCTCCCGCGACGCGCTCCGCCT 178
************************************************************
consensus_7507#0 CCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGT 240
consensus_7507#1 CCCGCCGCCGGCGGCCGTCCGGGTGCTCCGCCAGGCGCCGCGGCCGTCACGCGGCCTCGT 238
************************************************************
consensus_7507#0 CGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAGTATACAACGCTCAAGCCCTTGGCTGA 300
consensus_7507#1 CGTCAGGGCCGCCGCCGCCAGCGTCGCCCCGAAG-------------------------- 272
**********************************
consensus_7507#0 TAGAGTGCTTGTAAAGATTAAGTCTGCTGAGCAGAAGACAACTGGTGGGATTTTGCTTCC 360
consensus_7507#1 ------------------------------------------------------------
consensus_7507#0 TTCGGCTGCTCAGTCTAAACCCCAAGGGGGTGAGGTAGTTGCCATTGGGGAGGGACGAAC 420
consensus_7507#1 ------------------------------------------------------------
consensus_7507#0 TGTTGGGGATAACAAAGTGGAAGTTAGCATTCAGGTTGGATCCCAAGTCGTATATTCAAA 480
consensus_7507#1 ----------------------------------GTTGGATCCCAAGTCGTATATTCAAA 298
**************************
consensus_7507#0 ATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGA 540
consensus_7507#1 ATATGCTGGAACAGAGGTGGAGTTGAATGATTCCAACCATCTGATTCTTAAAGAGGATGA 358
************************************************************
consensus_7507#0 CATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGT 600
consensus_7507#1 CATCATTGGTATTCTGGAGACTGATGATGCAAAGGACATGAAGCCTCTTAGCGATCGTGT 418
************************************************************
consensus_7507#0 TCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAAC 660
consensus_7507#1 TCTTATCAAGGTCGCTGAAGCTGAAGATAAAACTCCTGGTGGCCTATTGCTTACTGAAAC 478
************************************************************
consensus_7507#0 AACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGA 720
consensus_7507#1 AACAAAGGAGAAGCCGTCTATTGGAACGGTCGTGGCTGTTGGCCCTGGTCCTCTGGATGA 538
************************************************************
consensus_7507#0 GGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATA 780
consensus_7507#1 GGAAGGCAAGAGGATTCCATTGTCGGTCTCTGCAGGCAGCACTGTTCTATATTCCAAATA 598
************************************************************
consensus_7507#0 TGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGA 840
consensus_7507#1 TGCTGGCAGCGAGTTCAAGGGCTCTGATGGCACGAGCTACATAGTGTTGCGGGTGTCAGA 658
************************************************************
consensus_7507#0 TCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTA 900
consensus_7507#1 TCTAATGGCTGTCCTCTCCTGAATTACCAGGTGCGCTCAGCTGAGCCATCCATCGTACTA 718
************************************************************
consensus_7507#0 TGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCA 960
consensus_7507#1 TGCCCTTTCAGCAACCATCTTTTTTGGAAAATATTGCTCCTGGAGATAACATTAAAGCCA 778
************************************************************
consensus_7507#0 CTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTAT 1020
consensus_7507#1 CTCGAATCCCCTTTTGTTACACCAAAATTGGGGTGGTGGTATATCATACTGATAAATTAT 838
************************************************************
consensus_7507#0 AATGAATGCCAACTTTTTTTGGTTGTTTTCAGCTTTGTAATGATTTATAGAAAAATGGGA 1080
consensus_7507#1 AATGAATGCCAACTTTTTTT---------------------------------------- 858
********************
consensus_7507#0 GAATAACTCCTAA 1093
consensus_7507#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||