These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1748 fasta sequence [CACCCTCCTCGTTTCTCCCAGGCTTCAGAGTCGCCGCCGCCAAATCGCCGCCCACCACCGGTCGCCCGCCGCCGCCGCCGCCGGTTGCCCGCTTCGCCCTAGCGGGCTCGCCCTCGCCAACGGCACCGCGACGCTTGCCTCGCCATCGCTGGCACCGCCTCGCCTCTGACCGCGAGCTCTTCGACGGCGTCAGACAGCGCCACGACCACTCCCCGCAGGCTGCGGCGCTGCGCCCACCACTCCCCGCGGCCTCTCACGGAGTGAGGCCTATCCGCGGCCTTTCTCGTGTCGGCTCCGTGAGACCTATCCGCGGCCTTTCTCGTGTCGGCTTGATTGTTCTTAATTCGTTGGCATGGGCAAATCCAAAGACAAGAAGGCCTCACGGGAAGCTAAAGCGGATAAGAAATTAGTGCTTGGAG-TGAAGAGGAAGGACTTGAAGAGAAAGAAGGACAGGACTTTGAATGGTCCTGTTGAGAATGAGGTTGCTGCTGAACATGGCACCGCAGAAGATAAAGGACTTGTACGAAAGAAGAAGGTTGTAGCGATGAAACAGAAGAAGCAAATGAAACTAAAGAGCAGTCAGACTGATTCTGATGACATGTTGGAACTCTTGACGAGTAAAAAGGATGAGACAAAGTTGAAGAACAAGAAGAAGAGCAAAAAGAATCTCAAAGAAGGCAGTAATCTTGTTGAGGAGCATCAAAGTTTGTCTGACAGAATTAATGCAGGAACGCCTAAGCTGAAGAAGGACCGGAGGAGCTCTGATGAGCCCAATAATGCAGATGAAGTCTTGCATGGGAATCAAGATGAAGAAACTCCAACTGCCCGTGTTAACCAACTCACAGCAGAGAGTGGAGATATGGATATAGGGGAGCCTGAAGAAGTGAAGAGGGGAAATAAAAGCAAGACCAAGAAAACAAAGAAATCAGGGAAAAGCAGCAAAAAGGATAAGCATGAATCCAGCAGAGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGCTCTGTTGGATAACATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGCCATGAATCCATGATGCCATCTGGTGCCTTTCATGGATGTTCTCCTGTTAAGTTGTACTCCCTCCGTCCCCTAATATAAGATATTTTGATATTTTAAAAAAAAAGA] [+] EMBL AK109840 [CACCCTCCTCGTTTCTCCCAGGCTTCAGAGTCGCCGCCGCCAAATCGCCGCCCACCACCGGTCGCCCGCCGCCGCCGCCGCCGGTTGCCCGCTTCGCCCTAGCGGGCTCGCCCTCGCCAACGGCACCGCGACGCTTGCCTCGCCATCGCTGGCACCGCCTCGCCTCTGACCGCGAGCTCTTCGACGGCGTCAGACAGCGCCACGACCACTCCCCGCAGGCTGCGGCGCTGCGCCCACCACTCCCCGCGGCCTCTCACGGAGTGAGGCCTATCCGCGGCCTTTCTCGTGTCGGCTCCGTGAGACCTATCCGCGGCCTTTCTCGTGTCGGCTTGATTGTTCTTAATTCGTTGGCATGGGCAAATCCAAAGACAAGAAGGCCTCACGGGAAGCTAAAGCGGATAAGAAATTAGTGCTTGGAG TGAAGAGGAAGGACTTGAAGAGAAAGAAGGACAGGACTTTGAATGGTCCTGTTGAGAATGAGGTTGCTGCTGAACATGGCACCGCAGAAGATAAAGGACTTGTACGAAAGAAGAAGGTTGTAGCGATGAAACAGAAGAAGCAAATGAAACTAAAGAGCAGTCAGACTGATTCTGATGACATGTTGGAACTCTTGACGAGTAAAAAGGATGAGACAAAGTTGAAGAACAAGAAGAAGAGCAAAAAGAATCTCAAAGAAGGCAGTAATCTTGTTGAGGAGCATCAAAGTTTGTCTGACAGAATTAATGCAGGAACGCCTAAGCTGAAGAAGGACCGGAGGAGCTCTGATGAGCCCAATAATGCAGATGAAGTCTTGCATGGGAATCAAGATGAAGAAACTCCAACTGCCCGTGTTAACCAACTCACAGCAGAGAGTGGAGATATGGATATAGGGGAGCCTGAAGAAGTGAAGAGGGGAAATAAAAGCAAGACCAAGAAAACAAAGAAATCAGGGAAAAGCAGCAAAAAGGATAAGCATGAATCCAGCAGAGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGCTCTGTTGGATAACATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGCCATGAATCCATGATGCCATCTGGTGCCTTTCATGGATGTTCTCCTGTTAAGTTGTACTCCCTCCGTCCCCTAATATAAGATATT ] [+] EMBL CB649324 [ TTGGAGCTGAAGAGGAAGGACTTGAAGAGAAAGAAGGACAGGACTTTGAATGGTCCTGTTGAGAATGAGGTTGCTGCTGAACATGGCACCGCAGAAGATAAAGGACTTGTACGAAAGAAGAAGGTTGTAGCGATGAAACAGAAGAAGCAAATGAAACTAAAGAGCAGTCAGACTGATTCTGATGACATGTTGGAACTCTTGACGAGTAAAAAGGATGAGACAAAGTTGAAGAACAAGAAGAAGAGCAAAAAGAATCTCAAAGAAGGCAGTAATCCTGTTGAGGAGCATCAAAGTTTGTCTGACAGAATTAATGCAGGAACGCCTAAGCTGAAGAAGGACCGGAGGAGCTCTGATGAGCCCAATAATGCAGATGAAGTCTTGCATGGGAATCAAGATGAAGAAACTCCAACTGCCCGTGTTAACCAACTCACAGCAGAGAGTGGAGATATGGATATAGGGGAGCCTGAAGAAGTGAAGAGGGGAAATAAAAGCAAGACCAAGAAAACAAAGAAATCAGGGAAAAGCAGCAAAAAGGATAAGCATGAATCCAGCAGAGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGAAAG ] [-] EMBL CB649325 [ AAGGATAAGCATGAATCCAGCAGAGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGCTCTGTTGGATAACATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGCCATGAATCCATGATGCCATCTGGTGCCTTTCATGGATGTTCTCCTGTTAAGTTGTACTCCCTCCGTCCCCTAATATAAGATATTTTGATATTTTAAAAAAAAAGA] consensusID : consensus_7523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [AGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGGTCCGTTGGATAACATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGCCAAAAAAAAAAAAAAAA] [-] EMBL CA762416 [AGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGATTCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACAGAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGAGGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGACAGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGTTGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGTTGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCTGCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATTCAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACCCTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGGTCCGTTGGATAACATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCAGATGTATTGGTTTAAAATCATGCCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7523#0 CACCCTCCTCGTTTCTCCCAGGCTTCAGAGTCGCCGCCGCCAAATCGCCGCCCACCACCG 60 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 GTCGCCCGCCGCCGCCGCCGCCGGTTGCCCGCTTCGCCCTAGCGGGCTCGCCCTCGCCAA 120 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 CGGCACCGCGACGCTTGCCTCGCCATCGCTGGCACCGCCTCGCCTCTGACCGCGAGCTCT 180 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 TCGACGGCGTCAGACAGCGCCACGACCACTCCCCGCAGGCTGCGGCGCTGCGCCCACCAC 240 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 TCCCCGCGGCCTCTCACGGAGTGAGGCCTATCCGCGGCCTTTCTCGTGTCGGCTCCGTGA 300 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 GACCTATCCGCGGCCTTTCTCGTGTCGGCTTGATTGTTCTTAATTCGTTGGCATGGGCAA 360 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 ATCCAAAGACAAGAAGGCCTCACGGGAAGCTAAAGCGGATAAGAAATTAGTGCTTGGAGT 420 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 GAAGAGGAAGGACTTGAAGAGAAAGAAGGACAGGACTTTGAATGGTCCTGTTGAGAATGA 480 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 GGTTGCTGCTGAACATGGCACCGCAGAAGATAAAGGACTTGTACGAAAGAAGAAGGTTGT 540 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 AGCGATGAAACAGAAGAAGCAAATGAAACTAAAGAGCAGTCAGACTGATTCTGATGACAT 600 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 GTTGGAACTCTTGACGAGTAAAAAGGATGAGACAAAGTTGAAGAACAAGAAGAAGAGCAA 660 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 AAAGAATCTCAAAGAAGGCAGTAATCTTGTTGAGGAGCATCAAAGTTTGTCTGACAGAAT 720 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 TAATGCAGGAACGCCTAAGCTGAAGAAGGACCGGAGGAGCTCTGATGAGCCCAATAATGC 780 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 AGATGAAGTCTTGCATGGGAATCAAGATGAAGAAACTCCAACTGCCCGTGTTAACCAACT 840 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 CACAGCAGAGAGTGGAGATATGGATATAGGGGAGCCTGAAGAAGTGAAGAGGGGAAATAA 900 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 AAGCAAGACCAAGAAAACAAAGAAATCAGGGAAAAGCAGCAAAAAGGATAAGCATGAATC 960 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 CAGCAGAGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGAT 1020 consensus_7523#1 ------AGAGAACAAGTTGGACAGGCATGGTGAAGTTGATACTGCAAATGTCGATGAGAT 54 ****************************************************** consensus_7523#0 TCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACA 1080 consensus_7523#1 TCAATCTGTTGATGAAGATTGTTCCAGAGGAATGAAAAAATGGGTCCTAGAGTACAAACA 114 ************************************************************ consensus_7523#0 GAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGA 1140 consensus_7523#1 GAAGAGGCCCGGCTTGAAAGTGTTGCAGCAAAGAATAGATGAGTTTATAACTGCTCATGA 174 ************************************************************ consensus_7523#0 GGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGAC 1200 consensus_7523#1 GGAACAAGAAGAGCAGGAGAGGAAAGAGAGGGAAGCACGCGCTGCTGAGGATGGATGGAC 234 ************************************************************ consensus_7523#0 AGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGT 1260 consensus_7523#1 AGTTGTGGTTCATCATAAGGGTAGGAAAAAGACCACAGATACTGAAACTGGAACAGCTGT 294 ************************************************************ consensus_7523#0 TGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGT 1320 consensus_7523#1 TGGCTCTGTATCTCTAGCTGCAATGCAGGAGAAAATGGCTAATAAGAAACCCAAGGAAGT 354 ************************************************************ consensus_7523#0 TGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCT 1380 consensus_7523#1 TGATATGAATTTCTACAGATTTCAAAAGCGAGAAGCTCACATCAGTGAACTCGCGATGCT 414 ************************************************************ consensus_7523#0 GCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATT 1440 consensus_7523#1 GCAGAGCAAGTTTGAGCAGGACAAGAAAAGGATACAGCAGCTTCGTGCTCAACGGAAATT 474 ************************************************************ consensus_7523#0 CAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACC 1500 consensus_7523#1 CAAGCCATACTAATGCTGCCCACTTTGGATATCTATCCTCAGAGACGCAGTGCTGCTACC 534 ************************************************************ consensus_7523#0 CTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGCTCTGTTGGATAAC 1560 consensus_7523#1 CTGTTGAAGGCCATACGTTTCATTCCTTCTTGGCAGCAAATGTTTGGTCCGTTGGATAAC 594 ********************************************** ** ********** consensus_7523#0 ATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCA 1620 consensus_7523#1 ATTTTTGGATCTTTACTTCTTAATGAACCGAAACAATTTCAGCCCTGCATTTGCAGCGCA 654 ************************************************************ consensus_7523#0 GATGTATTGGTTTAAAATCATGCCATGAATCCATGATGCCATCTGGTGCCTTTCATGGAT 1680 consensus_7523#1 GATGTATTGGTTTAAAATCATGCCAAAAAAAAAAAAAAAA-------------------- 694 ************************* ** * * consensus_7523#0 GTTCTCCTGTTAAGTTGTACTCCCTCCGTCCCCTAATATAAGATATTTTGATATTTTAAA 1740 consensus_7523#1 ------------------------------------------------------------ consensus_7523#0 AAAAAAGA 1748 consensus_7523#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||