Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7526 cluster # 7526       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7526#0 length = 1056 sequences # 4  
consensusID : consensus_7526#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1056
fasta sequence 
                              [AAGAGTACCAGCAGCACCCCCGCCTGAAGCTGTTCCGCGCCGACCCCTTGGACTACCACGCCATCGCCGACGCCGTCCATGGCTGCTCCGGCCTCTTCGCCATCTTCAACACCCCTTCCTCCTCGCAATCGCAATCGCACTCCTGC-TTCCTAGATGAGGA-GGAGGGTATGGTGGAGGCGGAGGTGCGAGCGGCGCACAACATTCTGGAGGCGTGCGCGCAGACGGACACCA-TGGAGA-GGGTGGTCTTCAACTCCTCCGTCACCGCCGTCGTGTGGAGGCCTCAGCCGGAGGAGGACGATGACGCTGCCTTGCAATTGGACGAGAACACCTGGAGCGACCTCACCTTCTGCAGAAGATTCAAGCTGTGGCACGCTCTGGCCAAGACGCTATCGGAGAGGACGGCGTGGGCCCTGGCAATGGACAGAGGAGTAGACATGGTGGCCATCAACGCCGGCCTGCTCACCGGCCCCGGCCTCACCGCCGGCCACCCTTACCTCAAGGGTGCACCCGACATGTACGACCACGGCGTCCTCGTCACCGTCGACGTCGACTTCCTCGCCGACGCCCACATCGCCGCCTACGAGTGCCCCACCGCCTAC-GGACGCTACCTCTGCTTCAACAACGCCATCTGCCGCCCGGAGGACGCCGCCAAGCTCGCCCAGATGCTCATCTCCTCCGCCGCCGCGCCGCGACCCCCTGCGCCGCCGAGTGATGAGCTCAAGGTGATCCCACAGAGGATCCACACAAAGAAGCTCAACAAACTCATGCTGGACTTCACCAGTGGCGTATACGGGGACATAAATTAAATTAAACTAGGGGATTTGCCTTCCTTTATTTTATATATCACACGTGCAACTAGACATGTACTACTCCTCTTGTATCTTCTTCTATTTCTTTTATTCTTTCTCCTCTAAAGGGAGGGAAATTTGGTTTGGTCAAATGTACATGTTGTACATGGCCAAGCTGCCACATGTATTCCATTCTTACAGAGGGTAAGATCATTTCAATGATTACTTATATACCAACAAACAAAATCCCTAGGTGATCAAAAAAAAA]

[+] EMBL AK064038             [AAGAGTACCAGCAGCACCCCCGCCTGAAGCTGTTCCGCGCCGACCCCTTGGACTACCACGCCATCGCCGACGCCGTCCATGGCTGCTCCGGCCTCTTCGCCATCTTCAACACCCCTTCCTCCTCGCAATCGCAATCGCACTCCTGC TTCCTAGATGAGGA GGAGGGTATGGTGGAGGCGGAGGTGCGAGCGGCGCACAACATTCTGGAGGCGTGCGCGCAGACGGACACCA TGGAGA GGGTGGTCTTCAACTCCTCCGTCACCGCCGTCGTGTGGAGGCCTCAGCCGGAGGAGGACGATGACGCTGCCTTGCAATTGGACGAGAACACCTGGAGCGACCTCACCTTCTGCAGAAGATTCAAGCTGTGGCACGCTCTGGCCAAGACGCTATCGGAGAGGACGGCGTGGGCCCTGGCAATGGACAGAGGAGTAGACATGGTGGCCATCAACGCCGGCCTGCTCACCGGCCCCGGCCTCACCGCCGGCCACCCTTACCTCAAGGGTGCACCCGACATGTACGACCACGGCGTCCTCGTCACCGTCGACGTCGACTTCCTCGCCGACGCCCACATCGCCGCCTACGAGTGCCCCACCGCCTAC GGACGCTACCTCTGCTTCAACAACGCCATCTGCCGCCCGGAGGACGCCGCCAAGCTCGCCCAGATGCTCATCTCCTCCGCCGCCGCGCCGCGACCCCCTGCGCCGCCGAGTGATGAGCTCAAGGTGATCCCACAGAGGATCCACACAAAGAAGCTCAACAAACTCATGCTGGACTTCACCAGTGGCGTATACGGGGACATAAATTAAATTAAACTAGGGGATTTGCCTTCCTTTATTTTATATATCACACGTGCAACTAGACATGTACTACTCCTCTTGTATCTTCTTCTATTTCTTTTATTCTTTCTCCTCTAAAGGGAGGGAAATTTGGTTTGGTCAAATGTACATGTTGTACATGGCCAAGCTGCCACATGTATTCCATTCTTACAGAGGGTAAGATCATTTCAATGATTACTT                                        ]
[+] EMBL AK099381             [AAGAGTACCAGCAGCACCCCCGCCTGAAGCTGTTCCGCGCCGACCCCTTGGACTACCACGCCATCGCCGACGCCGTCCATGGCTGCTCCGGCCTCTTCGCCATCTTCAACACCCCTTCCTCCTCGCAATCGCAATCGCACTCCTGC TTCCTAGATGAGGA GGAGGGTATGGTGGAGGCGGAGGTGCGAGCGGCGCACAACATTCTGGAGGCGTGCGCGCAGACGGACACCA TGGAGA GGGTGGTCTTCAACTCCTCCGTCACCGCCGTCGTGTGGAGGCCTCAGCCGGAGGAGGACGATGACGCTGCCTTGCAATTGGACGAGAACACCTGGAGCGACCTCACCTTCTGCAGAAGATTCAAGCTGTGGCACGCTCTGGCCAAGACGCTATCGGAGAGGACGGCGTGGGCCCTGGCAATGGACAGAGGAGTAGACATGGTGGCCATCAACGCCGGCCTGCTCACCGGCCCCGGCCTCACCGCCGGCCACCCTTACCTCAAGGGTGCACCCGACATGTACGACCACGGCGTCCTCGTCACCGTCGACGTCGACTTCCTCGCCGACGCCCACATCGCCGCCTACGAGTGCCCCACCGCCTAC GGACGCTACCTCTGCTTCAACAACGCCATCTGCCGCCCGGAGGACGCCGCCAAGCTCGCCCAGATGCTCATCTCCTCCGCCGCCGCGCCGCGACCCCCTGCGCCGCCGAGTGATGAGCTCAAGGTGATCCCACAGAGGATCCACACAAAGAAGCTCAACAAACTCATGCTGGACTTCACCAGTGGCGTATACGGGGACATAAATTAAATTAAACTAGGGGATTTGCCTTCCTTTATTTTATATATCACACGTGCAACTAGACATGTACTACTCCTCTTGTATCTTCTTCTATTTCTTTTATTCTTTCTCCTCTAAAGGGAGGGAAATTTGGTTTGGTCAAATGTACATGTTGTACATGGCCAAGCTGCCACATGTATTCCATTCTTACAGAGGGTAAGATCATTTCAATGATTA                                           ]
[+] EMBL OSC738               [AAGAGTACCAGCAGCACCCCCGCCTGAAGCTGTTCCGCGCCGACCCCTTGGACTACCACGCCATCGCCGACGNCGTCCATGGCTGCTCCGGCCTCTTCGCCATCTTCAACAACCCTTCCTCCTCGCAATCGCAATCGCACTCCTGCTTTNCTAGATGAGGANGGAGGGTATTGTTGAGGCGGAGGTTCGAGCTGCG AAAACATTCTTGAGGCGTNCGCGAAGACGGACACCATTGGAGAGGGGTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU083465             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCANCCGACATGTACGNCCACGGCGTCCTNGTCACCGTNGACGTCGACTTCCTCG CGACGCCCACATCGCCGCCTACGAGTGCCCCACCGCCTACGGGACGCTACCTGTGCTTCAACAACGCCATCTGCCGCCCGGAGGACGCCGCCAAGCTCGCCCAGATGCTCATCTCCTCCGCCGCCGCGCCGCGACCCCCTGCGCCGCCGAGTGATGAGCTCAAGGTGATCCCACAGAGGATCCACACAAAGAAGCTCAACAAACTCATGCTGGACTTCACCAGTGGCGTATACGGGGACATAAATTAAATTAAACTAGGGGATTTGCCTTCCTTTATTTTATATATCACACGTGCAACTAGACATGTACTACTCCTCTTGTATCTTCTTCTATTTCTTTTATTCTTTCTCCTCTAAAGGGAGGGAAATTTGGTTTGGTCAAATGTACATGTTGTACATGGCCAAGCTGCCACATGTATTCCATTCTTACAGAGGGTAAGATCATTTCAATGATTACTTATATACCAACAAACAAAATCCCTAGGTGATCAAAAAAAAA]




>consensus_7526#0
AAGAGTACCAGCAGCACCCCCGCCTGAAGCTGTTCCGCGCCGACCCCTTGGACTACCACG
CCATCGCCGACGCCGTCCATGGCTGCTCCGGCCTCTTCGCCATCTTCAACACCCCTTCCT
CCTCGCAATCGCAATCGCACTCCTGCTTCCTAGATGAGGAGGAGGGTATGGTGGAGGCGG
AGGTGCGAGCGGCGCACAACATTCTGGAGGCGTGCGCGCAGACGGACACCATGGAGAGGG
TGGTCTTCAACTCCTCCGTCACCGCCGTCGTGTGGAGGCCTCAGCCGGAGGAGGACGATG
ACGCTGCCTTGCAATTGGACGAGAACACCTGGAGCGACCTCACCTTCTGCAGAAGATTCA
AGCTGTGGCACGCTCTGGCCAAGACGCTATCGGAGAGGACGGCGTGGGCCCTGGCAATGG
ACAGAGGAGTAGACATGGTGGCCATCAACGCCGGCCTGCTCACCGGCCCCGGCCTCACCG
CCGGCCACCCTTACCTCAAGGGTGCACCCGACATGTACGACCACGGCGTCCTCGTCACCG
TCGACGTCGACTTCCTCGCCGACGCCCACATCGCCGCCTACGAGTGCCCCACCGCCTACG
GACGCTACCTCTGCTTCAACAACGCCATCTGCCGCCCGGAGGACGCCGCCAAGCTCGCCC
AGATGCTCATCTCCTCCGCCGCCGCGCCGCGACCCCCTGCGCCGCCGAGTGATGAGCTCA
AGGTGATCCCACAGAGGATCCACACAAAGAAGCTCAACAAACTCATGCTGGACTTCACCA
GTGGCGTATACGGGGACATAAATTAAATTAAACTAGGGGATTTGCCTTCCTTTATTTTAT
ATATCACACGTGCAACTAGACATGTACTACTCCTCTTGTATCTTCTTCTATTTCTTTTAT
TCTTTCTCCTCTAAAGGGAGGGAAATTTGGTTTGGTCAAATGTACATGTTGTACATGGCC
AAGCTGCCACATGTATTCCATTCTTACAGAGGGTAAGATCATTTCAATGATTACTTATAT
ACCAACAAACAAAATCCCTAGGTGATCAAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)