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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1485 fasta sequence
[CTCTCCTCCTCTTCTTTTGGCTCCGCCTCGCGCGCCACTCTCCCGCCCAGGCGCCTCTCTCTCTCTCTCTAGTTTCTCGCACCACCTGCCTACATATCGCCACAGCCGCTGTCGTCGTCTCGTCTCTGTGTGTGTGTCTCCATCAGACGCCGGCCATATAGCTAGCGAGACCGGCACATTCCCATCGGGAATCCGCCTCGGGCTTCGCCGCAATCCCACGCTAACTCACGCCGCACCAGATTCACGCTCCCAGCTACAAACTCCCAGCCGCGCGCCGGCCGCACGCGCGTGCGCACAGCTAGCGATCGATCGTGATCGTGACCGCGGCCGGGTTGACTGCCGCTCGACGAGCGCACACATCGATCAGCCGGCCGGACGAGGAGATTGTCAGATCGTCTCGGCTCGTCGACGGATTGGCCATCATGTTCGAGGGGATGGAGAGGGCGGGCTACGGCGTCGGCGTCGGCGGCGCGGGGGCGGTGGGAGCCGGGGTGGTGCTGTCGCGGGACCCCAAGCCGCGGCTGCGGTGGACGCCCGACCTGCACGAGCGCTTCGTCGAGGCCGTCACCAAGCTCGGCGGGCCTGACAAGGCAACCCCCAAGTCGGTGTTGAGACTGATGGGCATGAAAGGTCTCACCTTGTACCACCTCAAGAGCCATCTTCAGAAATATAGGCTTGGAAAGCAGAACAAGAAAGATACAGGCCTAGAAGCCAGCAGAGGAGCATTTGCTGCACATGGCATCAGTTTTGCCTCTGCTGCACCTCCTACCATCCCATCGGCTGAAAATAACAATGCAGGAGAAACGCCACTGGCCGATGCGCTGCGGTATCAAATTGAAGTCCAACGGAAACTGCACGAACAGCTTGAGGTTCAGAAGAAGCTTCAAATGCGAATTGAGGCCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATGCAACTGGAACTGCAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTCTTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAATGGAGAGCTAGCGAAAGCGATATCTGAAGACAATCTCAGAACTACCAATCTAGGCTTTCAGCTCTACCATGGAATTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGAATATCAAAGGAGGAGGATATGACCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCGGTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTTTAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTTAAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATAATCGTAGCTAATCAATCATGTCTAGATCTGAATATCAGAATATAT]
[+] EMBL AK059448 [CTCTCCTCCTCTTCTTTTGGCTCCGCCTCGCGCGCCACTCTCCCGCCCAGGCGCCTCTCTCTCTCTCTCTAGTTTCTCGCACCACCTGCCTACATATCGCCACAGCCGCTGTCGTCGTCTCGTCTCTGTGTGTGTGTCTCCATCAGACGCCGGCCATATAGCTAGCGAGACCGGCACATTCCCATCGGGAATCCGCCTCGGGCTTCGCCGCAATCCCACGCTAACTCACGCCGCACCAGATTCACGCTCCCAGCTACAAACTCCCAGCCGCGCGCCGGCCGCACGCGCGTGCGCACAGCTAGCGATCGATCGTGATCGTGACCGCGGCCGGGTTGACTGCCGCTCGACGAGCGCACACATCGATCAGCCGGCCGGACGAGGAGATTGTCAGATCGTCTCGGCTCGTCGACGGATTGGCCATCATGTTCGAGGGGATGGAGAGGGCGGGCTACGGCGTCGGCGTCGGCGGCGCGGGGGCGGTGGGAGCCGGGGTGGTGCTGTCGCGGGACCCCAAGCCGCGGCTGCGGTGGACGCCCGACCTGCACGAGCGCTTCGTCGAGGCCGTCACCAAGCTCGGCGGGCCTGACAAGGCAACCCCCAAGTCGGTGTTGAGACTGATGGGCATGAAAGGTCTCACCTTGTACCACCTCAAGAGCCATCTTCAGAAATATAGGCTTGGAAAGCAGAACAAGAAAGATACAGGCCTAGAAGCCAGCAGAGGAGCATTTGCTGCACATGGCATCAGTTTTGCCTCTGCTGCACCTCCTACCATCCCATCGGCTGAAAATAACAATGCAGGAGAAACGCCACTGGCCGATGCGCTGCGGTATCAAATTGAAGTCCAACGGAAACTGCACGAACAGCTTGAGGTTCAGAAGAAGCTTCAAATGCGAATTGAGGCCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATGCAACTGGAACTGCAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTCTTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAATGGAGAGCTAGCGAAAGCGATATCTGAAGACAATCTCAGAACTACCAATCTAGGCTTTCAGCTCTACCATGGAATTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGAATATCAAAGGAGGAGGATATGACCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCGGTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTTTAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTTAAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATAATCGTAGCTAATCAATCATGTCTAGATCTGAATATCAGAATATAT]
consensusID : consensus_7530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[AGAGGACGAGACAAGGGGGAGGCCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATGCAACTGGAACTGTAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTCTTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAGTGGAGAGCTAGCGAAAGCGATATCTGAAGACAATCTCAGAACTACCAATCCAGGCTTTCAGCTCTACCATGGAATTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGAATATCAAAGGAGGAGGATATGGCCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCGGTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTTTAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTTAAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATAATCGTAGCTAATCAATCATGTCTAGATCTGAATATAAGAATATATATACTGTATGAGTATTCGTACCTGCAAAAAAAAAA]
[-] EMBL CA762424 [AGAGGACGAGACAAGGGGGAGGCCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATGCAACTGGAACTGTAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTCTTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAGTGGAGAGCTAGCGAAAGCGATATCTGAAGACAATCTCAGAACTACCAATCCAGGCTTTCAGCTCTACCATGGAATTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGAATATCAAAGGAGGAGGATATGGCCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCGGTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTTTAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTTAAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATAATCGTAGCTAATCAATCATGTCTAGATCTGAATATAAGAATATATATACTGTATGAGTATTCGTACCTGCAAAAAAAAAA]
consensusID : consensus_7530#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 219 fasta sequence
[ATGGATTGAAGGAGTAGAAAGTTTTAATTAAGAGTTCCCTTTGTCCTATGAGAAATTTTTTTGTGGCGATATTGAGGGTGTTTAAGTACAGTGTTGGTCCAAAGTGTATTAATGTAAAATTTGTGGGGTAAAGGCTTTGAATAATTGTAGCTAATCAATCATGTTTAGATTTGAATATCAGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF300074 [ATGGATTGAAGGAGTAGAAAGTTTTAATTAAGAGTTCCCTTTGTCCTATGAGAAATTTTTTTGTGGCGATATTGAGGGTGTTTAAGTACAGTGTTGGTCCAAAGTGTATTAATGTAAAATTTGTGGGGTAAAGGCTTTGAATAATTGTAGCTAATCAATCATGTTTAGATTTGAATATCAGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF300075 [ GAAGGAGTAGAAAGTTTT TTTAAGAGTTACCTTTGTCCTATGAGCAATTCTTTTGTGGCGATATTGAGGGTGCTTAAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATAATCGTAGCTAATCAATCATGTCTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7530#0 CTCTCCTCCTCTTCTTTTGGCTCCGCCTCGCGCGCCACTCTCCCGCCCAGGCGCCTCTCT 60
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 CTCTCTCTCTAGTTTCTCGCACCACCTGCCTACATATCGCCACAGCCGCTGTCGTCGTCT 120
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 CGTCTCTGTGTGTGTGTCTCCATCAGACGCCGGCCATATAGCTAGCGAGACCGGCACATT 180
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 CCCATCGGGAATCCGCCTCGGGCTTCGCCGCAATCCCACGCTAACTCACGCCGCACCAGA 240
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 TTCACGCTCCCAGCTACAAACTCCCAGCCGCGCGCCGGCCGCACGCGCGTGCGCACAGCT 300
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 AGCGATCGATCGTGATCGTGACCGCGGCCGGGTTGACTGCCGCTCGACGAGCGCACACAT 360
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 CGATCAGCCGGCCGGACGAGGAGATTGTCAGATCGTCTCGGCTCGTCGACGGATTGGCCA 420
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 TCATGTTCGAGGGGATGGAGAGGGCGGGCTACGGCGTCGGCGTCGGCGGCGCGGGGGCGG 480
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 TGGGAGCCGGGGTGGTGCTGTCGCGGGACCCCAAGCCGCGGCTGCGGTGGACGCCCGACC 540
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 TGCACGAGCGCTTCGTCGAGGCCGTCACCAAGCTCGGCGGGCCTGACAAGGCAACCCCCA 600
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 AGTCGGTGTTGAGACTGATGGGCATGAAAGGTCTCACCTTGTACCACCTCAAGAGCCATC 660
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 TTCAGAAATATAGGCTTGGAAAGCAGAACAAGAAAGATACAGGCCTAGAAGCCAGCAGAG 720
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 GAGCATTTGCTGCACATGGCATCAGTTTTGCCTCTGCTGCACCTCCTACCATCCCATCGG 780
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 CTGAAAATAACAATGCAGGAGAAACGCCACTGGCCGATGCGCTGCGGTATCAAATTGAAG 840
consensus_7530#1 ------------------------------------------------------------
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 TCCAACGGAAACTGCACGAACAGCTTGAGGTTCAGAAGAAGCTTCAAATGCGAATTGAGG 900
consensus_7530#1 ---------------------------------AGAGGACGAGACAAGGGGG-----AGG 22
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 CCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATG 960
consensus_7530#1 CCCAAGGGAAATACCTGCAGACGATACTGGAGAAAGCCCAGAACAACCTCTCCTATGATG 82
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 CAACTGGAACTGCAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTC 1020
consensus_7530#1 CAACTGGAACTGTAAACCTCGAAGCAACCAGAACGCAGCTTACAGATTTCAACCTGGCTC 142
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 TTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAATGGAGAGCTAGCGA 1080
consensus_7530#1 TTTCAGGATTCATGAACAATGTTTCACAAGTGTGTGAACAGAACAGTGGAGAGCTAGCGA 202
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 AAGCGATATCTGAAGACAATCTCAGAACTACCAATCTAGGCTTTCAGCTCTACCATGGAA 1140
consensus_7530#1 AAGCGATATCTGAAGACAATCTCAGAACTACCAATCCAGGCTTTCAGCTCTACCATGGAA 262
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 TTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGA 1200
consensus_7530#1 TTCAGGATTCCGACGATGTCAAGTGTTCTCAAGATGAGGGCTTACTGCTGCTAGATTTGA 322
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 ATATCAAAGGAGGAGGATATGACCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCG 1260
consensus_7530#1 ATATCAAAGGAGGAGGATATGGCCATCTGTCCTCCAATGCCATGCGAGGCGGCGAATCCG 382
consensus_7530#2 ------------------------------------------------------------
consensus_7530#0 GTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTT 1320
consensus_7530#1 GTCTGAAGATTAGTCAGCACAGGAGGTAAAGATTCAGTAGAATGGCGACCATCTGTAGTT 442
consensus_7530#2 ------------------------------------ATGGATTGAAGGA-GTAGAAAGTT 23
* ** ** * * ****
consensus_7530#0 TAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTT 1380
consensus_7530#1 TAAATTAAGAGTTACCTTTGTCCTATGAGAAATTCTTTTGTGGCGATATTGAGGGTGCTT 502
consensus_7530#2 TTAATTAAGAGTTCCCTTTGTCCTATGAGAAATTTTTTTGTGGCGATATTGAGGGTGTTT 83
* *********** ******************** ********************** **
consensus_7530#0 AAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATA 1440
consensus_7530#1 AAGTACAGTGTTGGTCCAGAGTGTACTAATGTAAAATTTGTGGGGTAAAGGCTCTGAATA 562
consensus_7530#2 AAGTACAGTGTTGGTCCAAAGTGTATTAATGTAAAATTTGTGGGGTAAAGGCTTTGAATA 143
****************** ****** *************************** ******
consensus_7530#0 ATCGTAGCTAATCAATCATGTCTAGATCTGAATATCAGAATATAT--------------- 1485
consensus_7530#1 ATCGTAGCTAATCAATCATGTCTAGATCTGAATATAAGAATATATATACTGTATGAGTAT 622
consensus_7530#2 ATTGTAGCTAATCAATCATGTTTAGATTTGAATATCAGAATAAAAAAAAAAAAAAAAAAA 203
** ****************** ***** ******* ****** *
consensus_7530#0 --------------------
consensus_7530#1 TCGTACCTGCAAAAAAAAAA 642
consensus_7530#2 AAAAAAAAAAAAAAAA---- 219
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||